ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29b11 |
|---|---|
| Clone Library Name | barley_pub |
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 40.8 bits (94), Expect = 0.001 Identities = 28/101 (27%), Positives = 41/101 (40%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 MEV L LAG+ QTLS D + + D+ R Sbjct: 1 MEVTEANLQLLAGYLQQTLSADPNVRRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTR 60 Query: 294 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHIL 416 +A ++ FKN ++R W D+D D + +D IKT I+ Sbjct: 61 VAGAIAFKNYIKRNWAAHL-DSDGPDRIHESDRNTIKTLIV 100
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 972 Score = 35.8 bits (81), Expect = 0.042 Identities = 27/82 (32%), Positives = 33/82 (40%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 ME E L L+ F TLSP + + P D Q R Sbjct: 1 MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60 Query: 294 LAASVHFKNLLRRRWPKPADDA 359 AA+V+FKN LR RW PA D+ Sbjct: 61 HAAAVNFKNHLRSRW-HPAGDS 81
>CSE1_YEAST (P33307) Importin alpha re-exporter (Chromosome segregation protein| CSE1) Length = 960 Score = 34.7 bits (78), Expect = 0.094 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 234 GFXXXXXXXXSSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGDH-LPPNDCVIIKTH 410 GF +S L RLA ++ FKN ++R+W ++G+H LP N+ +IK Sbjct: 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-----ENGNHLLPANNVELIKKE 89 Query: 411 IL 416 I+ Sbjct: 90 IV 91
>ATKB_XANCP (Q8PCM1) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -3 Query: 418 WRMCVLMMTQSLGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASA 239 W + ++ L G ++ + A + G GQ R + ARR + G E R +A Sbjct: 70 WAVTAILFVTVLFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETRVPAAEL 129 Query: 238 KPG 230 +PG Sbjct: 130 RPG 132
>ATKB_XANAC (Q8PPC9) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -3 Query: 418 WRMCVLMMTQSLGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASA 239 W + ++ L G ++ + A + G GQ R + ARR + G E R +A Sbjct: 70 WAVTAILFVTVLFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETRVPAAEL 129 Query: 238 KPG 230 +PG Sbjct: 130 RPG 132
>CSE1_SCHPO (O13671) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 967 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Frame = +3 Query: 279 DLQARLAASVHFKNLLRRRWPKPADDADDGDHLPPNDCV--IIKTHIL 416 D+ +LAAS++FKN +++ W D+++G + +D V +IK I+ Sbjct: 48 DINIKLAASLYFKNYIKKHW-----DSEEGASIRISDEVAELIKREII 90
>GUN3_BACSU (P23549) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 373 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 230 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>GUN2_BACSU (P10475) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 373 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 230 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5| Length = 1048 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Frame = +3 Query: 156 FAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQARLAASVHFKNLLRRR 335 FA TL + PGF ++ +L+AS++FKN + Sbjct: 10 FACTLDHNAAVRTNAETHLKNASKVPGFLGACLDIIAADEVPENIKLSASLYFKNKITYG 69 Query: 336 WPKPADDADD---GDHLPPNDCVIIKTHILQ 419 W A + H+ P++ ++K +++ Sbjct: 70 WSAGARQGSNELLDSHVDPDEKPVVKDMLIK 100
>GUN1_BACSU (P07983) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 499 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 373 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 230 W S AS + G+ + R +L + ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLNYLDSKNISWVNWNLSDKQESSSALKPG 306 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,112,661 Number of Sequences: 219361 Number of extensions: 382000 Number of successful extensions: 1624 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1623 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
