ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa826... 84 4e-13
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
3dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
5ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothet... 44 0.36
6gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen... 44 0.36
7gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 44 0.36
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.36
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.36
11ref|XM_475190.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cyt... 42 1.4
15gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF gene... 42 1.4
16dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
18emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section... 42 1.4
19gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
20ref|XM_482765.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
21ref|XM_480321.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
22ref|XM_475598.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
23ref|XM_467596.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
24ref|XM_466302.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
25gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence 40 5.6
26gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, co... 40 5.6
27gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.6
28gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.6
29gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
30gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.6
31emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clo... 40 5.6
32emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on ch... 40 5.6
33ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.6
34ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.6
35emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.6
36emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.6
37gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, comple... 40 5.6
38gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 40 5.6
39gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosom... 40 5.6
40gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.6
41gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-lik... 40 5.6
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
43dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
44dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
45dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
46dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
47dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
48dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
49ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA 40 5.6
50dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
51dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
52gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.6
53gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.6
54gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone M... 40 5.6
55gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 5.6
56gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.6
57gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.6
58gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome... 40 5.6
59gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.6
60ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA 40 5.6
61ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y ... 40 5.6
62gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing... 40 5.6
63gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 m... 40 5.6
64gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding re... 40 5.6
65gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5,... 40 5.6 
>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 302 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 234



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 114 atggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctcc 173
           ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||||
Sbjct: 1   atggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctcc 60

             
Query: 174 cc 175
           ||
Sbjct: 61  cc 62



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 359 cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418
           ||||||||  |||||||||||||||  |||||||| |||||||||| || || |||||||
Sbjct: 255 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 314

             
Query: 419 gc 420
           ||
Sbjct: 315 gc 316
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                             
Query: 302     ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347
               ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7481500 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 7481455



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                           
Query: 113     aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 172
               |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 7481689 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 7481630

                  
Query: 173     ccc 175
               |||
Sbjct: 7481629 ccc 7481627



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 359     cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418
               ||||||||  |||||||||||||||  |||||||| |||||||||| || || |||||||
Sbjct: 7481434 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 7481375

                 
Query: 419     gc 420
               ||
Sbjct: 7481374 gc 7481373
to top
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                           
Query: 302   ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347
             ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 30292 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 30247



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                         
Query: 113   aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 172
             |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 30481 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 30422

                
Query: 173   ccc 175
             |||
Sbjct: 30421 ccc 30419



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 359   cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418
             ||||||||  |||||||||||||||  |||||||| |||||||||| || || |||||||
Sbjct: 30226 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 30167

               
Query: 419   gc 420
             ||
Sbjct: 30166 gc 30165
to top
>dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full
           insert sequence
          Length = 1754

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 302 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 360



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 113 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 172
           |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 126 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 185

              
Query: 173 ccc 175
           |||
Sbjct: 186 ccc 188



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 359 cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418
           ||||||||  |||||||||||||||  |||||||| |||||||||| || || |||||||
Sbjct: 381 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 440

             
Query: 419 gc 420
           ||
Sbjct: 441 gc 442
to top
>ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0015K05.5), mRNA
          Length = 942

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 346 ccgccgacgacgccgacgacggggac 371
           ||||||||||||||||||||| ||||
Sbjct: 37  ccgccgacgacgccgacgacgaggac 12
to top
>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
             sequence
          Length = 123292

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 346   ccgccgacgacgccgacgacggggac 371
             ||||||||||||||||||||| ||||
Sbjct: 38954 ccgccgacgacgccgacgacgaggac 38929
to top
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
              sequence
          Length = 151991

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 346    ccgccgacgacgccgacgacggggac 371
              ||||||||||||||||||||| ||||
Sbjct: 122601 ccgccgacgacgccgacgacgaggac 122576
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 346      ccgccgacgacgccgacgacggggac 371
                ||||||||||||||||||||| ||||
Sbjct: 18956087 ccgccgacgacgccgacgacgaggac 18956112
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 338     gcccaagcccgccgacgacgccgacg 363
               ||||||||||||||||| ||||||||
Sbjct: 8157056 gcccaagcccgccgacgccgccgacg 8157081



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     cgccgacgacgccgacgacg 366
               ||||||||||||||||||||
Sbjct: 1826445 cgccgacgacgccgacgacg 1826426



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     cgccgacgacgccgacgacg 366
               ||||||||||||||||||||
Sbjct: 1826436 cgccgacgacgccgacgacg 1826417
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 346      ccgccgacgacgccgacgacggggac 371
                ||||||||||||||||||||| ||||
Sbjct: 18967317 ccgccgacgacgccgacgacgaggac 18967342
to top
>ref|XM_475190.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 350 cgacgacgccgacgacggggaccacctcccgcc 382
           ||||||||||| ||||||| || ||||||||||
Sbjct: 60  cgacgacgccggcgacgggaacgacctcccgcc 28
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 350      cgacgacgccgacgacggggaccacctcccgcc 382
                ||||||||||| ||||||| || ||||||||||
Sbjct: 18798470 cgacgacgccggcgacgggaacgacctcccgcc 18798502



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     gccgacgacgccgacgacgg 367
               ||||||||||||||||||||
Sbjct: 2422083 gccgacgacgccgacgacgg 2422064
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 345      cccgccgacgacgccgacgac 365
                |||||||||||||||||||||
Sbjct: 15826220 cccgccgacgacgccgacgac 15826200



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 320      cctcctccgccgccgctggc 339
                ||||||||||||||||||||
Sbjct: 30366096 cctcctccgccgccgctggc 30366115



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 345      cccgccgacgacgccgacgacggg 368
                ||||||||||||| ||||||||||
Sbjct: 21582523 cccgccgacgacggcgacgacggg 21582546
to top
>gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cytochrome P450 reductase
           mRNA, partial cds
          Length = 2333

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 347 cgccgacgacgccgacgacgg 367
           |||||||||||||||||||||
Sbjct: 106 cgccgacgacgccgacgacgg 126
to top
>gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF genes, qcrABC genes,
            ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene,
            ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and
            ypoC gene, complete cds
          Length = 23775

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  ctccgtccatttcaagaacct 322
            |||||||||||||||||||||
Sbjct: 1563 ctccgtccatttcaagaacct 1543
to top
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1342_D02
          Length = 125460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   cccgccgacgacgccgacgac 365
             |||||||||||||||||||||
Sbjct: 84160 cccgccgacgacgccgacgac 84140
to top
>dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G12, full
           insert sequence
          Length = 665

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 345 cccgccgacgacgccgacgac 365
           |||||||||||||||||||||
Sbjct: 233 cccgccgacgacgccgacgac 253
to top
>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to
              2409180
          Length = 201375

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 302    ctccgtccatttcaagaacct 322
              |||||||||||||||||||||
Sbjct: 157794 ctccgtccatttcaagaacct 157814
to top
>gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_G07,
             complete sequence
          Length = 71145

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 350   cgacgacgccgacgacggggaccacctcccgcc 382
             ||||||||||| ||||||| || ||||||||||
Sbjct: 20836 cgacgacgccggcgacgggaacgacctcccgcc 20868
to top
>ref|XM_482765.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cgccgacgacgccgacgacg 366
           ||||||||||||||||||||
Sbjct: 312 cgccgacgacgccgacgacg 293
to top
>ref|XM_480321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 346 ccgccgacgacgccgacgacgggg 369
           |||||||||||||||||| |||||
Sbjct: 341 ccgccgacgacgccgacgccgggg 364
to top
>ref|XM_475598.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 231

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gccgacgacgccgacgacgg 367
           ||||||||||||||||||||
Sbjct: 48  gccgacgacgccgacgacgg 67
to top
>ref|XM_467596.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 320 cctcctccgccgccgctggc 339
           ||||||||||||||||||||
Sbjct: 191 cctcctccgccgccgctggc 172
to top
>ref|XM_466302.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 345 cccgccgacgacgccgacgacggg 368
           ||||||||||||| ||||||||||
Sbjct: 135 cccgccgacgacggcgacgacggg 112
to top
>gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence
          Length = 1011

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 ggaggtgccgccggagatgc 135
           ||||||||||||||||||||
Sbjct: 239 ggaggtgccgccggagatgc 258
to top
>gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 aggtgccgccggagatgctc 137
           ||||||||||||||||||||
Sbjct: 83  aggtgccgccggagatgctc 102
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     cgccgacgacgccgacgacg 366
               ||||||||||||||||||||
Sbjct: 1769437 cgccgacgacgccgacgacg 1769456
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    cgccgacgacgccgacgacg 366
              ||||||||||||||||||||
Sbjct: 482585 cgccgacgacgccgacgacg 482566
to top
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04,
             complete sequence
          Length = 133271

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   gccgacgacgccgacgacgg 367
             ||||||||||||||||||||
Sbjct: 97683 gccgacgacgccgacgacgg 97664
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     cgccgacgacgccgacgacg 366
               ||||||||||||||||||||
Sbjct: 3014919 cgccgacgacgccgacgacg 3014938
to top
>emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clone EATC1F07B
          Length = 317

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cgccgacgacgccgacgacg 366
           ||||||||||||||||||||
Sbjct: 193 cgccgacgacgccgacgacg 174
to top
>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains
            the DXYS155E gene for DNA segment on chromosome X and Y
            (unique) 155 expressed sequence (XE7, XE7Y), the ASMT
            gene for acetylserotonin O-methyltransferase (ASMTY,
            HIOMT, HIOMTY), three novel genes and three CpG islands,
            complete sequence
          Length = 189825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  ccgccgccgctggcccaagc 345
            ||||||||||||||||||||
Sbjct: 9198 ccgccgccgctggcccaagc 9179
to top
>ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus similar to
            sporulation-induced transcript 4-associated protein
            (LOC575241), mRNA
          Length = 4368

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  cgccgacgacgccgacgacg 366
            ||||||||||||||||||||
Sbjct: 3840 cgccgacgacgccgacgacg 3859



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  cgccgacgacgccgacgacg 366
            ||||||||||||||||||||
Sbjct: 3831 cgccgacgacgccgacgacg 3850
to top
>ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14853-PB,
            isoform B (LOC575371), partial mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  cgccgacgacgccgacgacg 366
            ||||||||||||||||||||
Sbjct: 1692 cgccgacgacgccgacgacg 1711
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    acgacgccgacgacggggac 371
              ||||||||||||||||||||
Sbjct: 565961 acgacgccgacgacggggac 565980
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     cgccgacgacgccgacgacg 366
               ||||||||||||||||||||
Sbjct: 2744891 cgccgacgacgccgacgacg 2744910
to top
>gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 116 ggaggtgccgccggagatgctcga 139
           ||||||| ||||||||||||||||
Sbjct: 75  ggaggtgacgccggagatgctcga 98
to top
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 343    agcccgccgacgacgccgacgacgggga 370
              |||||| |||||||| ||||||||||||
Sbjct: 151219 agcccgacgacgacgacgacgacgggga 151246



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 343    agcccgccgacgacgccgacgacgggga 370
              |||||| |||||||| ||||||||||||
Sbjct: 131205 agcccgacgacgacgacgacgacgggga 131178
to top
>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete sequence
          Length = 201039

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     cccttcccctcttctccacg 20
             ||||||||||||||||||||
Sbjct: 98543 cccttcccctcttctccacg 98562
to top
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
             complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   cgccgacgacgccgacgacg 366
             ||||||||||||||||||||
Sbjct: 38573 cgccgacgacgccgacgacg 38592
to top
>gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-like protein CO7
           (CO7) mRNA, partial cds
          Length = 1056

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 340 ccaagcccgccgacgacgccgacg 363
           |||||| |||||||||||||||||
Sbjct: 627 ccaagcgcgccgacgacgccgacg 650
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 347      cgccgacgacgccgacgacg 366
                ||||||||||||||||||||
Sbjct: 22411066 cgccgacgacgccgacgacg 22411085



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 346     ccgccgacgacgccgacgacgggg 369
               |||||||||||||||||| |||||
Sbjct: 4311861 ccgccgacgacgccgacgccgggg 4311838
to top
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   cccgccgacgacgccgacgacggg 368
             ||||||||||||| ||||||||||
Sbjct: 71473 cccgccgacgacggcgacgacggg 71496
to top
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0054L03
          Length = 183623

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   ccgccgacgacgccgacgacgggg 369
             |||||||||||||||||| |||||
Sbjct: 74655 ccgccgacgacgccgacgccgggg 74632
to top
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   cctcctccgccgccgctggc 339
             ||||||||||||||||||||
Sbjct: 46956 cctcctccgccgccgctggc 46975
to top
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    cgccgacgacgccgacgacg 366
              ||||||||||||||||||||
Sbjct: 108049 cgccgacgacgccgacgacg 108068
to top
>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0493A04
          Length = 149367

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  cgccgacgacgccgacgacg 366
            ||||||||||||||||||||
Sbjct: 5994 cgccgacgacgccgacgacg 6013
to top
>dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E08, full
           insert sequence
          Length = 1848

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cgccgacgacgccgacgacg 366
           ||||||||||||||||||||
Sbjct: 312 cgccgacgacgccgacgacg 293
to top
>ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cgccgacgacgccgacgacg 366
           ||||||||||||||||||||
Sbjct: 955 cgccgacgacgccgacgacg 936
to top
>dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142A16, full
           insert sequence
          Length = 750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 345 cccgccgacgacgccgacgacggg 368
           ||||||||||||| ||||||||||
Sbjct: 135 cccgccgacgacggcgacgacggg 112
to top
>dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H08, full
           insert sequence
          Length = 449

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gccgacgacgccgacgacgg 367
           ||||||||||||||||||||
Sbjct: 158 gccgacgacgccgacgacgg 177
to top
>gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:125365 IMAGE:40007662), complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 144 ccgccgccgctggcccaagc 125
to top
>gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:125366 IMAGE:40007663), complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 144 ccgccgccgctggcccaagc 125
to top
>gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone MGC:112764
           IMAGE:7389584), complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  acctcgccgctccaccccct 61
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
to top
>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete
             sequence
          Length = 188880

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   aacctcctccgccgccgctg 337
             ||||||||||||||||||||
Sbjct: 78410 aacctcctccgccgccgctg 78429
to top
>gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:39904 IMAGE:5217247), complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 114 ccgccgccgctggcccaagc 95
to top
>gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           IMAGE:4430810), containing frame-shift errors
          Length = 1073

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 146 ccgccgccgctggcccaagc 127
to top
>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      cccttcccctcttctccacg 20
              ||||||||||||||||||||
Sbjct: 196548 cccttcccctcttctccacg 196567
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     cgccgacgacgccgacgacg 366
               ||||||||||||||||||||
Sbjct: 3895743 cgccgacgacgccgacgacg 3895724
to top
>ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA
          Length = 1272

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  acctcgccgctccaccccct 61
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
to top
>ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1 (DXYS155E), mRNA
          Length = 3227

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 146 ccgccgccgctggcccaagc 127
to top
>gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing frame-shift
           errors
          Length = 3127

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 58  ccgccgccgctggcccaagc 39
to top
>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete sequence
          Length = 202175

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     cccttcccctcttctccacg 20
             ||||||||||||||||||||
Sbjct: 98783 cccttcccctcttctccacg 98802
to top
>gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding regions
          Length = 3233

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 116 ccgccgccgctggcccaagc 97
to top
>gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5, complete cds
          Length = 2622

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccgccgccgctggcccaagc 345
           ||||||||||||||||||||
Sbjct: 119 ccgccgccgctggcccaagc 100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,285,818
Number of Sequences: 3902068
Number of extensions: 2285818
Number of successful extensions: 60956
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59247
Number of HSP's gapped (non-prelim): 1709
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top