>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 395 NSPPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGNEEK*SPTLPPLLRGAARDLP 216
           N+ P  + LPD+G  ++D L + P  +       P+  G+  + +PT      GA    P
Sbjct: 138 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPPSPDGKGDSGEVAPT-----EGAPDSSP 192

Query: 215 SLTRSRSGR 189
            ++R R  R
Sbjct: 193 MVSRLRGRR 201

>IL3RB_HUMAN (P32927) Cytokine receptor common beta chain precursor|
           (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131
           antigen) (CDw131)
          Length = 897

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 416 FVTRKGANSPPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGNEEK*SPTLPPLLR 237
           F +    +  PWG   P+     L+G++  P  FG +E S   ++  +    P   P   
Sbjct: 503 FTSGSPPHQGPWGSRFPE-----LEGVF--PVGFGDSEVSPLTIEDPKHVCDPPSGPDTT 555

Query: 236 GAARDLPS 213
            AA DLP+
Sbjct: 556 PAASDLPT 563

>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 12  PPHLH--SNRIAPLPPISPPS 68
           PPH H  S  I+P PPI+PPS
Sbjct: 585 PPHPHHGSGGISPPPPITPPS 605

>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 12  PPHLH--SNRIAPLPPISPPS 68
           PPH H  S  I+P PPI+PPS
Sbjct: 584 PPHPHHGSGGISPPPPITPPS 604

>PX11C_HUMAN (Q96HA9) Peroxisomal membrane protein 11C (Peroxin-11C)|
           (Peroxisomal biogenesis factor 11C) (PEX11gamma)
           (Pex11pgamma)
          Length = 241

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -3

Query: 389 PPWGRSLPDTGRSILDGLYQTPRAFGGAEASQP 291
           PPW   L  T  SIL  +YQ  RA G AEA+ P
Sbjct: 210 PPWLVGLMGTISSILS-MYQAARAGGQAEATTP 241

>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 769

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 12  PPHLH--SNRIAPLPPISPPS 68
           PPH H  S  I+P PPI+PPS
Sbjct: 584 PPHPHHGSGGISPPPPITPPS 604


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,471,364
Number of Sequences: 219361
Number of extensions: 1022123
Number of successful extensions: 2933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2930
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)