ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
2dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
5gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
6gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
7emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.42
8emb|AJ347062.1|UBA347062 Uncultured bacterium 16S rRNA gene, clo... 44 0.42
9emb|AJ347036.1|UBA347036 Uncultured bacterium 16S rRNA gene, clo... 44 0.42
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
11ref|XM_467923.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
12gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
13gb|AC145326.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
14gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.6
15gb|AC139884.8| Mus musculus chromosome 6, clone RP23-343E20, com... 42 1.6
16ref|XM_811457.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.6
17gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, compl... 42 1.6
18emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.6
19emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.6
20emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
21gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 1.6
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
25dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
26dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
27dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
28dbj|AK099679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
29dbj|AK072585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
30dbj|AK072373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
31dbj|AK068344.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
32emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 42 1.6
33dbj|AK062650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
35emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
36ref|XM_523706.1| PREDICTED: Pan troglodytes similar to nuclear r... 40 6.5
37ref|XM_464884.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
38gb|BC084544.1| Homo sapiens cDNA clone IMAGE:4591955, partial cds 40 6.5
39gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.5
40ref|XM_600248.2| PREDICTED: Bos taurus similar to Tripartite mot... 40 6.5
41ref|NM_005234.3| Homo sapiens nuclear receptor subfamily 2, grou... 40 6.5
42gb|BC063018.1| Homo sapiens nuclear receptor subfamily 2, group ... 40 6.5
43emb|CR974447.12| Mouse DNA sequence from clone RP23-452G2 on chr... 40 6.5
44gb|AC132598.3| Mus musculus BAC clone RP24-196M16 from chromosom... 40 6.5
45gb|BC002669.2| Homo sapiens nuclear receptor subfamily 2, group ... 40 6.5
46gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence 40 6.5
47emb|X12794.1|HSEAR2 Human v-erbA related ear-2 gene 40 6.5
48emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 6.5
49emb|AJ438039.1|RLE438039 Rhizobium leguminosarum bv. phaseoli pa... 40 6.5
50emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, compl... 40 6.5
51emb|CR932802.1| Mus musculus chromosome 2, clone GenSys-198F12 s... 40 6.5
52emb|CR932799.1| Mus musculus chromosome 2, clone RPCI-22-207E02 ... 40 6.5
53gb|AE011996.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.5
54gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 6.5
55dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 6.5
56gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.5
57gb|AC010646.5| Homo sapiens chromosome 19 clone LLNLR-277B12, co... 40 6.5
58gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.5
59gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, com... 40 6.5
60gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.5
61gb|AF126956.1|AF126956 Streptomyces coelicolor ferric uptake reg... 40 6.5
62gb|AC067968.1|AC067968 Homo sapiens chromosome 19, cosmid R34369... 40 6.5
63dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
64emb|BX571892.9| Mouse DNA sequence from clone RP23-207B21 on chr... 40 6.5
65dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
66dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
67emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chr... 40 6.5
68emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.5
69emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 ... 40 6.5
70gb|AF038569.1|AF038569 Schistocerca americana embryonic hemolymp... 40 6.5
71emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chro... 40 6.5
72gb|M21628.1|HSBGLYB Bovine herpesvirus type 2 glycoprotein B gen... 40 6.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                            
Query: 338      gaccatccaaaattgagcgcccagtatctgggagtgacctgccccaaggtggggagttcg 397
                |||| ||||||||| |||| || | ||| ||| | ||||||||||| ||||||||| |||
Sbjct: 19939950 gaccgtccaaaattcagcgaccgggatccgggggcgacctgccccagggtggggagatcg 19939891

                                                                  
Query: 398      ctccttttctagtaacgaagagggcaaactcttattccatcatgatggaa 447
                |||||||||  || || | |||||| |||||||||||   ||||||||||
Sbjct: 19939890 ctccttttcctgtgacaaggagggcgaactcttattcagccatgatggaa 19939841



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 229      gcggccccgcggaggagcggc 249
                |||||||||||||||||||||
Sbjct: 32103912 gcggccccgcggaggagcggc 32103932



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cgacgacgcgtggggccgcg 105
               ||||||||||||||||||||
Sbjct: 9000595 cgacgacgcgtggggccgcg 9000614
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>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0508B05
          Length = 166165

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                          
Query: 338    gaccatccaaaattgagcgcccagtatctgggagtgacctgccccaaggtggggagttcg 397
              |||| ||||||||| |||| || | ||| ||| | ||||||||||| ||||||||| |||
Sbjct: 117551 gaccgtccaaaattcagcgaccgggatccgggggcgacctgccccagggtggggagatcg 117492

                                                                
Query: 398    ctccttttctagtaacgaagagggcaaactcttattccatcatgatggaa 447
              |||||||||  || || | |||||| |||||||||||   ||||||||||
Sbjct: 117491 ctccttttcctgtgacaaggagggcgaactcttattcagccatgatggaa 117442
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>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0014M17
          Length = 156778

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                         
Query: 338   gaccatccaaaattgagcgcccagtatctgggagtgacctgccccaaggtggggagttcg 397
             |||| ||||||||| |||| || | ||| ||| | ||||||||||| ||||||||| |||
Sbjct: 44071 gaccgtccaaaattcagcgaccgggatccgggggcgacctgccccagggtggggagatcg 44012

                                                               
Query: 398   ctccttttctagtaacgaagagggcaaactcttattccatcatgatggaa 447
             |||||||||  || || | |||||| |||||||||||   ||||||||||
Sbjct: 44011 ctccttttcctgtgacaaggagggcgaactcttattcagccatgatggaa 43962
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>dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F16, full
           insert sequence
          Length = 3048

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 338 gaccatccaaaattgagcgcccagtatctgggagtgacctgccccaaggtggggagttcg 397
           |||| ||||||||| |||| || | ||| ||| | ||||||||||| ||||||||| |||
Sbjct: 395 gaccgtccaaaattcagcgaccgggatccgggggcgacctgccccagggtggggagatcg 454

                                                             
Query: 398 ctccttttctagtaacgaagagggcaaactcttattccatcatgatggaa 447
           |||||||||  || || | |||||| |||||||||||   ||||||||||
Sbjct: 455 ctccttttcctgtgacaaggagggcgaactcttattcagccatgatggaa 504
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>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16,
              complete sequence
          Length = 139615

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 233    ccccgcggaggagcggcggcag 254
              ||||||||||||||||||||||
Sbjct: 116347 ccccgcggaggagcggcggcag 116326
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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 233   ccccgcggaggagcggcggcag 254
             ||||||||||||||||||||||
Sbjct: 35507 ccccgcggaggagcggcggcag 35486
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 133    gaccgccactgccgccagcgcc 154
              ||||||||||||||||||||||
Sbjct: 128408 gaccgccactgccgccagcgcc 128387
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>emb|AJ347062.1|UBA347062 Uncultured bacterium 16S rRNA gene, clone TK36
          Length = 433

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 371 gtgacctgccccaaggtgggga 392
           ||||||||||||||||||||||
Sbjct: 117 gtgacctgccccaaggtgggga 138
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>emb|AJ347036.1|UBA347036 Uncultured bacterium 16S rRNA gene, clone TK17
          Length = 1334

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 371 gtgacctgccccaaggtgggga 392
           ||||||||||||||||||||||
Sbjct: 115 gtgacctgccccaaggtgggga 136
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 233      ccccgcggaggagcggcggcag 254
                ||||||||||||||||||||||
Sbjct: 14700053 ccccgcggaggagcggcggcag 14700032
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>ref|XM_467923.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1353

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gcggccccgcggaggagcggc 249
           |||||||||||||||||||||
Sbjct: 152 gcggccccgcggaggagcggc 132
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>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0066C04,
              complete sequence
          Length = 133944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 236    cgcggaggagcggcggcagcg 256
              |||||||||||||||||||||
Sbjct: 132729 cgcggaggagcggcggcagcg 132709
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>gb|AC145326.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0076C23 map near C53961S, complete sequence
          Length = 11139

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  cgcggaggagcggcggcagcg 256
            |||||||||||||||||||||
Sbjct: 5628 cgcggaggagcggcggcagcg 5608
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 133     gaccgccactgccgccagcgccggtgacc 161
               ||||| |||||||| ||||||||||||||
Sbjct: 3923398 gaccggcactgccggcagcgccggtgacc 3923426
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>gb|AC139884.8| Mus musculus chromosome 6, clone RP23-343E20, complete sequence
          Length = 227769

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 261  gctctacttctcttcattccc 281
            |||||||||||||||||||||
Sbjct: 3656 gctctacttctcttcattccc 3676
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>ref|XM_811457.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508387.160) partial mRNA
          Length = 2319

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 136  cgccactgccgccagcgccgg 156
            |||||||||||||||||||||
Sbjct: 2180 cgccactgccgccagcgccgg 2200
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>gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, complete sequence
          Length = 151295

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   gctctacttctcttcattccc 281
             |||||||||||||||||||||
Sbjct: 28465 gctctacttctcttcattccc 28445
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>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 133    gaccgccactgccgccagcgccggtgacc 161
              ||||| |||||||| ||||||||||||||
Sbjct: 112389 gaccggcactgccggcagcgccggtgacc 112417
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>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14
          Length = 316050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 133    gaccgccactgccgccagcgccggtgacc 161
              ||||| |||||||| ||||||||||||||
Sbjct: 124116 gaccggcactgccggcagcgccggtgacc 124144
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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
              complete sequence
          Length = 139080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    cgcggaggagcggcggcagcg 256
              |||||||||||||||||||||
Sbjct: 106033 cgcggaggagcggcggcagcg 106053
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    ccgccactgccgccagcgccg 155
              |||||||||||||||||||||
Sbjct: 952274 ccgccactgccgccagcgccg 952254
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 236      cgcggaggagcggcggcagcg 256
                |||||||||||||||||||||
Sbjct: 25888623 cgcggaggagcggcggcagcg 25888643
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 236      cgcggaggagcggcggcagcg 256
                |||||||||||||||||||||
Sbjct: 11614997 cgcggaggagcggcggcagcg 11615017
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 236      cgcggaggagcggcggcagcg 256
                |||||||||||||||||||||
Sbjct: 10329072 cgcggaggagcggcggcagcg 10329092



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      cgcggaggagcggcggcagc 255
                ||||||||||||||||||||
Sbjct: 22063590 cgcggaggagcggcggcagc 22063571
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>dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1197G05
          Length = 130823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   cgcggaggagcggcggcagcg 256
             |||||||||||||||||||||
Sbjct: 36609 cgcggaggagcggcggcagcg 36629
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>dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0649C11
          Length = 138870

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    cgcggaggagcggcggcagcg 256
              |||||||||||||||||||||
Sbjct: 133299 cgcggaggagcggcggcagcg 133319
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>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   gcggccccgcggaggagcggc 249
             |||||||||||||||||||||
Sbjct: 40568 gcggccccgcggaggagcggc 40588
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>dbj|AK099679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070O18, full
           insert sequence
          Length = 2856

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 cgcggaggagcggcggcagcg 256
           |||||||||||||||||||||
Sbjct: 59  cgcggaggagcggcggcagcg 39
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>dbj|AK072585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133I16, full
           insert sequence
          Length = 2523

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 cgcggaggagcggcggcagcg 256
           |||||||||||||||||||||
Sbjct: 85  cgcggaggagcggcggcagcg 65
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>dbj|AK072373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065D01, full
           insert sequence
          Length = 3109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 cgcggaggagcggcggcagcg 256
           |||||||||||||||||||||
Sbjct: 87  cgcggaggagcggcggcagcg 67
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>dbj|AK068344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149L20, full
           insert sequence
          Length = 1354

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gcggccccgcggaggagcggc 249
           |||||||||||||||||||||
Sbjct: 153 gcggccccgcggaggagcggc 133
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 97      ggggccgcgaccgccggcggccgcgccga 125
               ||||||| ||| |||||||||||||||||
Sbjct: 1736530 ggggccgagacggccggcggccgcgccga 1736502
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>dbj|AK062650.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E06, full
           insert sequence
          Length = 529

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 cgcggaggagcggcggcagcg 256
           |||||||||||||||||||||
Sbjct: 75  cgcggaggagcggcggcagcg 55
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 236      cgcggaggagcggcggcagcg 256
                |||||||||||||||||||||
Sbjct: 11694186 cgcggaggagcggcggcagcg 11694206
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>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
             complete sequence
          Length = 139226

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   cgcggaggagcggcggcagcg 256
             |||||||||||||||||||||
Sbjct: 14885 cgcggaggagcggcggcagcg 14905
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>ref|XM_523706.1| PREDICTED: Pan troglodytes similar to nuclear receptor subfamily 2,
           group F, member 6; ERBA-related gene-2; v-erb-a avian
           erythroblastic leukemia viral oncogene homolog-like 2
           (LOC468317), mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 cgccactgccgccagcgccg 155
           ||||||||||||||||||||
Sbjct: 375 cgccactgccgccagcgccg 356
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>ref|XM_464884.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 702

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cgacgacgcgtggggccgcg 105
           ||||||||||||||||||||
Sbjct: 437 cgacgacgcgtggggccgcg 456
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>gb|BC084544.1| Homo sapiens cDNA clone IMAGE:4591955, partial cds
          Length = 1814

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 cgccactgccgccagcgccg 155
           ||||||||||||||||||||
Sbjct: 563 cgccactgccgccagcgccg 544
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 70      cccagctcagtgcgcgcgacgacg 93
               ||||| ||||||||||||||||||
Sbjct: 1925646 cccaggtcagtgcgcgcgacgacg 1925669
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>ref|XM_600248.2| PREDICTED: Bos taurus similar to Tripartite motif protein 32
           (Zinc-finger protein HT2A) (72 kDa Tat-interacting
           protein) (LOC521975), mRNA
          Length = 2049

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 ccgcggaggagcggcggcag 254
           ||||||||||||||||||||
Sbjct: 422 ccgcggaggagcggcggcag 441
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>ref|NM_005234.3| Homo sapiens nuclear receptor subfamily 2, group F, member 6
           (NR2F6), mRNA
          Length = 1804

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 cgccactgccgccagcgccg 155
           ||||||||||||||||||||
Sbjct: 587 cgccactgccgccagcgccg 568
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>gb|BC063018.1| Homo sapiens nuclear receptor subfamily 2, group F, member 6, mRNA
           (cDNA clone IMAGE:5228022), partial cds
          Length = 1783

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 cgccactgccgccagcgccg 155
           ||||||||||||||||||||
Sbjct: 527 cgccactgccgccagcgccg 508
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>emb|CR974447.12| Mouse DNA sequence from clone RP23-452G2 on chromosome 17, complete
             sequence
          Length = 139010

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tgaaatggaaaaggaagacc 469
             ||||||||||||||||||||
Sbjct: 58909 tgaaatggaaaaggaagacc 58928
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>gb|AC132598.3| Mus musculus BAC clone RP24-196M16 from chromosome 17, complete
             sequence
          Length = 162858

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tgaaatggaaaaggaagacc 469
             ||||||||||||||||||||
Sbjct: 16006 tgaaatggaaaaggaagacc 16025
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>gb|BC002669.2| Homo sapiens nuclear receptor subfamily 2, group F, member 6, mRNA
           (cDNA clone IMAGE:3608765), partial cds
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 cgccactgccgccagcgccg 155
           ||||||||||||||||||||
Sbjct: 587 cgccactgccgccagcgccg 568
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>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence
          Length = 136822

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 232  gccccgcggaggagcggcgg 251
            ||||||||||||||||||||
Sbjct: 8126 gccccgcggaggagcggcgg 8145
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>emb|X12794.1|HSEAR2 Human v-erbA related ear-2 gene
          Length = 2380

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  cgccactgccgccagcgccg 155
            ||||||||||||||||||||
Sbjct: 1167 cgccactgccgccagcgccg 1148
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   cgccggcggccgcgccgacg 127
             ||||||||||||||||||||
Sbjct: 12854 cgccggcggccgcgccgacg 12835
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>emb|AJ438039.1|RLE438039 Rhizobium leguminosarum bv. phaseoli panB (partial), oxyR and katG
            genes
          Length = 4754

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  cgccggcggccgcgccgacg 127
            ||||||||||||||||||||
Sbjct: 2410 cgccggcggccgcgccgacg 2429
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>emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, complete sequence
          Length = 198202

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    tggctgactggcttccgccccacc 314
              ||||| ||||||||||||||||||
Sbjct: 181775 tggctcactggcttccgccccacc 181752
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>emb|CR932802.1| Mus musculus chromosome 2, clone GenSys-198F12 strain 129/Sv, complete
             sequence
          Length = 99647

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   gccccgcggaggagcggcggcagc 255
             ||||| ||||||||||||||||||
Sbjct: 79082 gccccacggaggagcggcggcagc 79059
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>emb|CR932799.1| Mus musculus chromosome 2, clone RPCI-22-207E02 strain 129/Sv, complete
             sequence
          Length = 151675

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   gccccgcggaggagcggcggcagc 255
             ||||| ||||||||||||||||||
Sbjct: 24341 gccccacggaggagcggcggcagc 24318
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>gb|AE011996.1| Xanthomonas axonopodis pv. citri str. 306,  section 374 of 469 of the
            complete genome
          Length = 10994

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  gccgcgaccgccggcggccg 119
            ||||||||||||||||||||
Sbjct: 1166 gccgcgaccgccggcggccg 1185
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  cgccggcggccgcgccgacg 127
            ||||||||||||||||||||
Sbjct: 4074 cgccggcggccgcgccgacg 4093
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    accgcgtcaacgaggggaga 222
              ||||||||||||||||||||
Sbjct: 373728 accgcgtcaacgaggggaga 373709
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     cgaccgccggcggccgcgcc 123
               ||||||||||||||||||||
Sbjct: 3786955 cgaccgccggcggccgcgcc 3786936
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>gb|AC010646.5| Homo sapiens chromosome 19 clone LLNLR-277B12, complete sequence
          Length = 41461

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   cgccactgccgccagcgccg 155
             ||||||||||||||||||||
Sbjct: 26334 cgccactgccgccagcgccg 26353
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     cgccgacgaacgggaccgcc 139
               ||||||||||||||||||||
Sbjct: 1375376 cgccgacgaacgggaccgcc 1375357
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>gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, complete sequence
          Length = 94576

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   tggctgactggcttccgccccacc 314
             ||||| ||||||||||||||||||
Sbjct: 24704 tggctcactggcttccgccccacc 24681
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     cgccggcggccgcgccgacg 127
               ||||||||||||||||||||
Sbjct: 2898057 cgccggcggccgcgccgacg 2898038
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>gb|AF126956.1|AF126956 Streptomyces coelicolor ferric uptake regulator homolog (furA) and
            catalase-peroxidase (catC) genes, complete cds
          Length = 3027

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  cgccggcggccgcgccgacg 127
            ||||||||||||||||||||
Sbjct: 1336 cgccggcggccgcgccgacg 1355
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>gb|AC067968.1|AC067968 Homo sapiens chromosome 19, cosmid R34369 (LLNL-R_306H5), complete
            sequence
          Length = 40389

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 436  atcatgatggaaagtgaaatggaa 459
            ||||||||||||||||||| ||||
Sbjct: 7589 atcatgatggaaagtgaaagggaa 7566
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>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0612G07
          Length = 182548

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    cgcggaggagcggcggcagc 255
              ||||||||||||||||||||
Sbjct: 101463 cgcggaggagcggcggcagc 101444
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>emb|BX571892.9| Mouse DNA sequence from clone RP23-207B21 on chromosome 2, complete
             sequence
          Length = 170046

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   gccccgcggaggagcggcggcagc 255
             ||||| ||||||||||||||||||
Sbjct: 54658 gccccacggaggagcggcggcagc 54635
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>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1178F07
          Length = 144454

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cgacgacgcgtggggccgcg 105
             ||||||||||||||||||||
Sbjct: 41041 cgacgacgcgtggggccgcg 41060
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>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0060K08
          Length = 159626

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cgacgacgcgtggggccgcg 105
             ||||||||||||||||||||
Sbjct: 73204 cgacgacgcgtggggccgcg 73223
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>emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chromosome 17, complete
              sequence
          Length = 177152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    tggctgactggcttccgccccacc 314
              ||||| ||||||||||||||||||
Sbjct: 163988 tggctcactggcttccgccccacc 163965
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     gaccgccactgccgccagcg 152
               ||||||||||||||||||||
Sbjct: 3318599 gaccgccactgccgccagcg 3318618
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>emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 in linkage group 19,
              complete sequence
          Length = 199001

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    ttattccatcatgatggaaa 448
              ||||||||||||||||||||
Sbjct: 105486 ttattccatcatgatggaaa 105505
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>gb|AF038569.1|AF038569 Schistocerca americana embryonic hemolymph protein precursor, mRNA,
           complete cds
          Length = 2307

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 cgcgaccgcgtcaacgaggg 218
           ||||||||||||||||||||
Sbjct: 415 cgcgaccgcgtcaacgaggg 434
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>emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chromosome 17, complete
              sequence
          Length = 162935

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    tgaaatggaaaaggaagacc 469
              ||||||||||||||||||||
Sbjct: 158961 tgaaatggaaaaggaagacc 158980
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>gb|M21628.1|HSBGLYB Bovine herpesvirus type 2 glycoprotein B gene, complete cds
          Length = 9388

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 224  ctcgggcggccccgcggagg 243
            ||||||||||||||||||||
Sbjct: 4663 ctcgggcggccccgcggagg 4682


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,007,830
Number of Sequences: 3902068
Number of extensions: 3007830
Number of successful extensions: 88758
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87301
Number of HSP's gapped (non-prelim): 1457
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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