ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||||||||||| |||||| Sbjct: 3338062 cctttggccagccatccgctccggcgtttggc 3338093 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||||||||||| |||||| Sbjct: 3338014 cctttggccagccatccgctccggcgtttggc 3338045 Score = 52.0 bits (26), Expect = 0.002 Identities = 111/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 270 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acag--ggctttggccag 326 ||||||||||||||||| |||| |||||| |||||| | || |||| || ||||||||| Sbjct: 3337797 agcccttttgggcagacctcaagcaacccattcggggcacagacaggcggatttggccag 3337856 Query: 327 cccagcaccaccaacaacaatcccttcgcacccaaacccttcggcagcccgacccctgca 386 | | ||| |||| || |||||| || || || |||||||| |||||||||| | | ||| Sbjct: 3337857 gcgaacactaccaccaccaatccttttgcgccgaaaccctttggcagcccgatcaccgca 3337916 Query: 387 tttggggcgccgacagg 403 || ||||| | |||||| Sbjct: 3337917 ttcggggcacagacagg 3337933 Score = 48.1 bits (24), Expect = 0.027 Identities = 92/112 (82%), Gaps = 2/112 (1%) Strand = Plus / Plus Query: 270 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acagggctttggccagcc 328 |||||||| || ||||| |||| |||||| || ||| |||| ||||| ||||||||| | Sbjct: 3346454 agccctttcggccagacctcaagcaacccttttggggcccagacagga-tttggccaggc 3346512 Query: 329 cagcaccaccaacaacaatcccttcgcacccaaacccttcggcagcccgacc 380 ||||||| ||| | |||||| ||||| || ||||| || |||||||||||| Sbjct: 3346513 cagcacctccacctccaatccgttcgcgccgaaaccatttggcagcccgacc 3346564 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggcgc 466 ||||||||||||||||| | ||||| |||||||| Sbjct: 3346668 cctttggccagccatccaccccggcgtttggcgc 3346701 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 |||| |||||||||||| ||||||| |||||| Sbjct: 3346716 ccttcggccagccatccactccggcgtttggc 3346747 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||| ||| ||| |||||| Sbjct: 3338110 cctttggccagccatccactcaggcgtttggc 3338141 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 |||||||||||||||| |||||| | |||||| Sbjct: 3337966 cctttggccagccatctgctccgacgtttggc 3337997
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||||||||||| |||||| Sbjct: 3338007 cctttggccagccatccgctccggcgtttggc 3338038 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||||||||||| |||||| Sbjct: 3337959 cctttggccagccatccgctccggcgtttggc 3337990 Score = 52.0 bits (26), Expect = 0.002 Identities = 111/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 270 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acag--ggctttggccag 326 ||||||||||||||||| |||| |||||| |||||| | || |||| || ||||||||| Sbjct: 3337742 agcccttttgggcagacctcaagcaacccattcggggcacagacaggcggatttggccag 3337801 Query: 327 cccagcaccaccaacaacaatcccttcgcacccaaacccttcggcagcccgacccctgca 386 | | ||| |||| || |||||| || || || |||||||| |||||||||| | | ||| Sbjct: 3337802 gcgaacactaccaccaccaatccttttgcgccgaaaccctttggcagcccgatcaccgca 3337861 Query: 387 tttggggcgccgacagg 403 || ||||| | |||||| Sbjct: 3337862 ttcggggcacagacagg 3337878 Score = 48.1 bits (24), Expect = 0.027 Identities = 92/112 (82%), Gaps = 2/112 (1%) Strand = Plus / Plus Query: 270 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acagggctttggccagcc 328 |||||||| || ||||| |||| |||||| || ||| |||| ||||| ||||||||| | Sbjct: 3346399 agccctttcggccagacctcaagcaacccttttggggcccagacagga-tttggccaggc 3346457 Query: 329 cagcaccaccaacaacaatcccttcgcacccaaacccttcggcagcccgacc 380 ||||||| ||| | |||||| ||||| || ||||| || |||||||||||| Sbjct: 3346458 cagcacctccacctccaatccgttcgcgccgaaaccatttggcagcccgacc 3346509 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggcgc 466 ||||||||||||||||| | ||||| |||||||| Sbjct: 3346613 cctttggccagccatccaccccggcgtttggcgc 3346646 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 |||| |||||||||||| ||||||| |||||| Sbjct: 3346661 ccttcggccagccatccactccggcgtttggc 3346692 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||| ||| ||| |||||| Sbjct: 3338055 cctttggccagccatccactcaggcgtttggc 3338086 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 |||||||||||||||| |||||| | |||||| Sbjct: 3337911 cctttggccagccatctgctccgacgtttggc 3337942
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||||||||||| |||||| Sbjct: 17115 cctttggccagccatccgctccggcgtttggc 17146 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||||||||||| |||||| Sbjct: 17067 cctttggccagccatccgctccggcgtttggc 17098 Score = 52.0 bits (26), Expect = 0.002 Identities = 111/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 270 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acag--ggctttggccag 326 ||||||||||||||||| |||| |||||| |||||| | || |||| || ||||||||| Sbjct: 16850 agcccttttgggcagacctcaagcaacccattcggggcacagacaggcggatttggccag 16909 Query: 327 cccagcaccaccaacaacaatcccttcgcacccaaacccttcggcagcccgacccctgca 386 | | ||| |||| || |||||| || || || |||||||| |||||||||| | | ||| Sbjct: 16910 gcgaacactaccaccaccaatccttttgcgccgaaaccctttggcagcccgatcaccgca 16969 Query: 387 tttggggcgccgacagg 403 || ||||| | |||||| Sbjct: 16970 ttcggggcacagacagg 16986 Score = 48.1 bits (24), Expect = 0.027 Identities = 92/112 (82%), Gaps = 2/112 (1%) Strand = Plus / Plus Query: 270 agcccttttgggcagacgtcaaccaaccccttcgggaccca-acagggctttggccagcc 328 |||||||| || ||||| |||| |||||| || ||| |||| ||||| ||||||||| | Sbjct: 25507 agccctttcggccagacctcaagcaacccttttggggcccagacagga-tttggccaggc 25565 Query: 329 cagcaccaccaacaacaatcccttcgcacccaaacccttcggcagcccgacc 380 ||||||| ||| | |||||| ||||| || ||||| || |||||||||||| Sbjct: 25566 cagcacctccacctccaatccgttcgcgccgaaaccatttggcagcccgacc 25617 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggcgc 466 ||||||||||||||||| | ||||| |||||||| Sbjct: 25721 cctttggccagccatccaccccggcgtttggcgc 25754 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 |||| |||||||||||| ||||||| |||||| Sbjct: 25769 ccttcggccagccatccactccggcgtttggc 25800 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 ||||||||||||||||| ||| ||| |||||| Sbjct: 17163 cctttggccagccatccactcaggcgtttggc 17194 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 cctttggccagccatccgctccggcctttggc 464 |||||||||||||||| |||||| | |||||| Sbjct: 17019 cctttggccagccatctgctccgacgtttggc 17050
>ref|XM_608162.2| PREDICTED: Bos taurus similar to Homeobox protein engrailed-1 (Hu-En-1) (LOC529707), mRNA Length = 966 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 190 cctcctccgtccgccgcagccgccaccacca 220 ||||||||| |||||||||||||| |||||| Sbjct: 305 cctcctccggccgccgcagccgccgccacca 275
>gb|AY012605.1| Drosophila kanekoi no on or off transient A (nonA) gene, exon 2 and partial cds Length = 478 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 gtccgccgcagccgccaccacc 219 |||||||||||||||||||||| Sbjct: 319 gtccgccgcagccgccaccacc 298
>ref|XM_483580.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1089 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 ctcctcctccgtccgccgcagccgccacc 216 ||||||||||| ||||||| ||||||||| Sbjct: 947 ctcctcctccgaccgccgccgccgccacc 975
>ref|NM_001012672.1| Bos taurus uroplakin IIIB (UPK3B), mRNA Length = 2328 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 312 cagggctttggccagcccagcaccaccaa 340 ||||||| |||||||||||||||||||| Sbjct: 219 cagggctggggccagcccagcaccaccaa 191
>ref|XM_324150.1| Neurospora crassa OR74A predicted protein (NCU04794.1) partial mRNA Length = 1113 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 196 ccgtccgccgcagccgccaccacca 220 ||||||||||| ||||||||||||| Sbjct: 328 ccgtccgccgccgccgccaccacca 352
>ref|XM_955327.1| Neurospora crassa OR74A hypothetical protein (NCU04794.1) partial mRNA Length = 1113 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 196 ccgtccgccgcagccgccaccacca 220 ||||||||||| ||||||||||||| Sbjct: 328 ccgtccgccgccgccgccaccacca 352
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacca 220 ||||||||||||||||||||| Sbjct: 282300 ccgccgcagccgccaccacca 282320
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacca 220 ||||||||||||||||||||| Sbjct: 285878 ccgccgcagccgccaccacca 285898
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacca 220 ||||||||||||||||||||| Sbjct: 16130 ccgccgcagccgccaccacca 16110
>gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, complete sequence Length = 115289 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacca 220 ||||||||||||||||||||| Sbjct: 111959 ccgccgcagccgccaccacca 111979
>gb|AY233461.1| Bos taurus uroplakin IIIb mRNA, complete cds Length = 2328 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 312 cagggctttggccagcccagcaccaccaa 340 ||||||| |||||||||||||||||||| Sbjct: 219 cagggctggggccagcccagcaccaccaa 191
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 188 ctcctcctccgtccgccgcagccgccacc 216 ||||||||||| ||||||| ||||||||| Sbjct: 27070646 ctcctcctccgaccgccgccgccgccacc 27070618 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccaccatcaa 224 ||||||| ||||||||||||||||| Sbjct: 2424751 ccgccgccgccgccaccaccatcaa 2424775 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 25925567 ccgccgcagccgccaccacc 25925548
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 gccgccaccaccatcaaccag 228 ||||||||||||||||||||| Sbjct: 480702 gccgccaccaccatcaaccag 480722
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0025F03 Length = 138042 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccaccatcaa 224 ||||||| ||||||||||||||||| Sbjct: 100721 ccgccgccgccgccaccaccatcaa 100745
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1211_G06 Length = 96421 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 188 ctcctcctccgtccgccgcagccgccacc 216 ||||||||||| ||||||| ||||||||| Sbjct: 41733 ctcctcctccgaccgccgccgccgccacc 41705
>dbj|AK108062.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B03, full insert sequence Length = 1833 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccaccatcaa 224 ||||||| ||||||||||||||||| Sbjct: 53 ccgccgccgccgccaccaccatcaa 29
>gb|AC005335.1|AC005335 Homo sapiens chromosome 19, cosmid R34296, complete sequence Length = 47003 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacca 220 ||||||||||||||||||||| Sbjct: 39369 ccgccgcagccgccaccacca 39349
>ref|XM_483376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 1064 ccgccgcagccgccaccacc 1083
>gb|DQ115388.1| Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence Length = 74589 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 173 caggtgacccaccatctcctcctccgtccgccgcagccgc 212 ||||| || ||||||||||| ||||||| || |||||||| Sbjct: 28545 caggtcacgcaccatctcctgctccgtctgctgcagccgc 28506
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gaaggagaagcaacccccac 141 |||||||||||||||||||| Sbjct: 96261 gaaggagaagcaacccccac 96242
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgccgcagccgccaccacca 220 |||||||||||||||||||| Sbjct: 30078 cgccgcagccgccaccacca 30097
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cctcctccgtccgccgcagc 209 |||||||||||||||||||| Sbjct: 116685 cctcctccgtccgccgcagc 116666
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgccgcagccgccaccacca 220 |||||||||||||||||||| Sbjct: 158537 cgccgcagccgccaccacca 158556
>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence Length = 184265 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cgccgcagccgccaccacca 220 |||||||||||||||||||| Sbjct: 131532 cgccgcagccgccaccacca 131513
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 160698 ccgccgcagccgccaccacc 160679
>gb|AC026470.6| Homo sapiens chromosome 16 clone RP11-44I10, complete sequence Length = 169566 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 caccaccatcaaccagccatgttc 236 ||||||||||||||||||| |||| Sbjct: 30627 caccaccatcaaccagccaggttc 30650
>gb|AC142096.25| Medicago truncatula clone mth2-6m16, complete sequence Length = 129053 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgtccgccgcagccgccaccacca 220 |||||||| ||||||||||||||| Sbjct: 45754 cgtccgcctcagccgccaccacca 45731
>gb|AC142507.13| Medicago truncatula clone mth2-30h19, complete sequence Length = 117666 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 cgtccgccgcagccgccaccacca 220 |||||||| ||||||||||||||| Sbjct: 105902 cgtccgcctcagccgccaccacca 105925
>gb|AC146705.11| Medicago truncatula clone mth2-101f3, complete sequence Length = 120058 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cccagcaccaccaacaacaa 346 |||||||||||||||||||| Sbjct: 10197 cccagcaccaccaacaacaa 10216
>emb|Z35146.1|BFHOX6G B.floridae Hox-6 gene for homeobox protein (partial) Length = 681 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgccaccaccatcaaccagc 229 |||||||||||||||||||| Sbjct: 597 cgccaccaccatcaaccagc 616
>gb|BC070062.1| Homo sapiens Ras and Rab interactor 3, mRNA (cDNA clone MGC:87258 IMAGE:30332851), complete cds Length = 3617 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 2824 ccgccgcagccgccaccacc 2805
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 ctttggccagcccagcaccaccaa 340 ||||| |||||||||||||||||| Sbjct: 3061291 ctttgcccagcccagcaccaccaa 3061314
>gb|AC023813.6| Homo sapiens chromosome 16 clone CTC-527H23, complete sequence Length = 127725 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 caccaccatcaaccagccatgttc 236 ||||||||||||||||||| |||| Sbjct: 83442 caccaccatcaaccagccaggttc 83465
>gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete sequence Length = 20252 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 gacgtcgcggccccaccctccagc 33 |||||||||||| ||||||||||| Sbjct: 4119 gacgtcgcggcctcaccctccagc 4142
>gb|DQ270991.1| Mustela vison clone IX5J4 microsatellite sequence Length = 467 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ctcctcctccgtccgccgca 207 |||||||||||||||||||| Sbjct: 457 ctcctcctccgtccgccgca 438
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 23955 ccgccgcagccgccaccacc 23936
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 122002 ccgccgcagccgccaccacc 121983
>ref|NM_132412.1| Drosophila melanogaster CG9817-RA (CG9817), mRNA Length = 6497 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 3286 ccgccgcagccgccaccacc 3267
>ref|NM_079093.2| Drosophila melanogaster Fibrillarin CG9888-RA (Fib), mRNA Length = 1331 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 188 ctcctcctccgtccgccgcagccgccaccacc 219 |||||||||| |||||||| |||||||||||| Sbjct: 184 ctcctcctcc-tccgccgccgccgccaccacc 154
>ref|XM_689438.1| PREDICTED: Danio rerio similar to TRH3 (LOC566164), partial mRNA Length = 569 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tttcgtctcctcctgaacca 92 |||||||||||||||||||| Sbjct: 473 tttcgtctcctcctgaacca 454
>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds Length = 68460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cccagcaccaccaacaacaa 346 |||||||||||||||||||| Sbjct: 2764 cccagcaccaccaacaacaa 2745
>gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone BACR08P09, complete sequence Length = 181463 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 188 ctcctcctccgtccgccgcagccgccaccacc 219 |||||||||| |||||||| |||||||||||| Sbjct: 112706 ctcctcctcc-tccgccgccgccgccaccacc 112736
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgccgcagccgccaccacca 220 |||||||||||||||||||| Sbjct: 17868886 cgccgcagccgccaccacca 17868905 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tctcctcctccgtccgccgc 206 |||||||||||||||||||| Sbjct: 634456 tctcctcctccgtccgccgc 634475
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cctcctccgtccgccgcagc 209 |||||||||||||||||||| Sbjct: 599286 cctcctccgtccgccgcagc 599267
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 tccgccgcagccgccaccaccatc 222 |||||||| ||||||||||||||| Sbjct: 6222091 tccgccgccgccgccaccaccatc 6222114
>gb|AC124817.2| Branchiostoma floridae, clone -10F3, complete sequence Length = 133980 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cgccaccaccatcaaccagc 229 |||||||||||||||||||| Sbjct: 114858 cgccaccaccatcaaccagc 114839
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1267_F10 Length = 162669 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 tccgccgcagccgccaccaccatc 222 |||||||| ||||||||||||||| Sbjct: 19478 tccgccgccgccgccaccaccatc 19501
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 111354 ccgccgcagccgccaccacc 111335
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 10444 ccgccgcagccgccaccacc 10425
>dbj|AK121158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L12, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 1225 ccgccgcagccgccaccacc 1244
>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete sequence Length = 283700 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 188 ctcctcctccgtccgccgcagccgccaccacc 219 |||||||||| |||||||| |||||||||||| Sbjct: 178519 ctcctcctcc-tccgccgccgccgccaccacc 178549
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 120744 ccgccgcagccgccaccacc 120763
>gb|AC123702.11| Mus musculus chromosome 19, clone RP23-341D12, complete sequence Length = 154959 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgccgcagccgccaccacca 220 |||||||||||||||||||| Sbjct: 146209 cgccgcagccgccaccacca 146228
>gb|BT001738.1| Drosophila melanogaster RE72617 full insert cDNA Length = 1235 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 188 ctcctcctccgtccgccgcagccgccaccacc 219 |||||||||| |||||||| |||||||||||| Sbjct: 184 ctcctcctcc-tccgccgccgccgccaccacc 154
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgccgcagccgccaccacca 220 |||||||||||||||||||| Sbjct: 17963203 cgccgcagccgccaccacca 17963222 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tctcctcctccgtccgccgc 206 |||||||||||||||||||| Sbjct: 634456 tctcctcctccgtccgccgc 634475
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tctcctcctccgtccgccgc 206 |||||||||||||||||||| Sbjct: 108516 tctcctcctccgtccgccgc 108497
>gb|AF020235.1|AF020235 Sauromalus obesus strain tumidus cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 902 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 atccccctcctccacctttc 64 |||||||||||||||||||| Sbjct: 860 atccccctcctccacctttc 879
>gb|AF020228.1|AF020228 Sauromalus obesus strain obesus cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 902 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 atccccctcctccacctttc 64 |||||||||||||||||||| Sbjct: 860 atccccctcctccacctttc 879
>gb|AF020225.1|AF020225 Sauromalus obesus strain obesus cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 902 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 atccccctcctccacctttc 64 |||||||||||||||||||| Sbjct: 860 atccccctcctccacctttc 879
>gb|AF020224.1|AF020224 Sauromalus obesus strain obesus cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 902 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 atccccctcctccacctttc 64 |||||||||||||||||||| Sbjct: 860 atccccctcctccacctttc 879
>gb|AF020223.1|AF020223 Sauromalus obesus strain obesus cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 902 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 atccccctcctccacctttc 64 |||||||||||||||||||| Sbjct: 860 atccccctcctccacctttc 879
>dbj|AP004934.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02L13, TM0095a, complete sequence Length = 16590 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ccaccaccatcaaccagcca 231 |||||||||||||||||||| Sbjct: 15965 ccaccaccatcaaccagcca 15984
>gb|U18650.1|RNU18650 Rattus norvegicus Huntington gene product mRNA, complete cds Length = 9929 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccgccgcagccgccaccacc 219 |||||||||||||||||||| Sbjct: 99 ccgccgcagccgccaccacc 118
>emb|X05285.1|DMGCR6 D.melanogaster GC-rich dispersed repeat GCR6 (Fibrillarin gene fragment) Length = 441 Score = 40.1 bits (20), Expect = 6.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 188 ctcctcctccgtccgccgcagccgccaccacc 219 |||||||||| |||||||| |||||||||||| Sbjct: 79 ctcctcctcc-tccgccgccgccgccaccacc 49 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,055,094 Number of Sequences: 3902068 Number of extensions: 4055094 Number of successful extensions: 93637 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 92939 Number of HSP's gapped (non-prelim): 703 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
