Clone Information

BLAST Search Result

Clone Name	bastl29b05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TECT3_MOUSE (Q8R2Q6) Tectonic-3 precursor	34	0.15
2	AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)	34	0.20
3	PALB_NEUCR (Q7RZP7) Calpain-like protease palB/rim-13 (EC 3.4.22...	33	0.26
4	DNAK_PHOLL (Q7N8Y4) Chaperone protein dnaK (Heat shock protein 7...	33	0.33
5	PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor	32	0.97
6	GLND_STRCO (O69873) [Protein-PII] uridylyltransferase (EC 2.7.7....	32	0.97
7	GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor	32	0.97
8	YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 i...	32	0.97
9	GRLF1_HUMAN (Q9NRY4) Glucocorticoid receptor DNA-binding factor ...	31	1.3
10	HES2_MOUSE (O54792) Transcription factor HES-2 (Hairy and enhanc...	31	1.7
11	NR5A2_MOUSE (P45448) Orphan nuclear receptor NR5A2 (Liver recept...	31	1.7
12	SMAD5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SM...	31	1.7
13	RUVA_CAUCR (Q9A3G7) Holliday junction ATP-dependent DNA helicase...	30	2.2
14	UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	30	2.2
15	UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	30	2.2
16	GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)	30	2.2
17	BLYA_BACSU (O31982) N-acetylmuramoyl-L-alanine amidase blyA (EC ...	30	2.8
18	RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7	30	2.8
19	E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ET...	30	2.8
20	YGF6_YEAST (P53172) Hypothetical 58.1 kDa protein in UBC2-OLE1 i...	30	3.7
21	SMAD5_MOUSE (P97454) Mothers against decapentaplegic homolog 5 (...	30	3.7
22	SMAD5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (...	30	3.7
23	Y674_TREPA (O83680) Hypothetical protein TP0674	30	3.7
24	KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Kat...	30	3.7
25	NR5A2_RAT (Q9QWM1) Orphan nuclear receptor NR5A2 (Liver receptor...	29	4.8
26	LIPB1_MOUSE (Q8C8U0) Liprin-beta-1 (Protein tyrosine phosphatase...	29	4.8
27	ZDHC6_MOUSE (Q9CPV7) Probable palmitoyltransferase ZDHHC6 (EC 2....	29	4.8
28	SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-rel...	29	4.8
29	IRF2_MOUSE (P23906) Interferon regulatory factor 2 (IRF-2)	29	6.3
30	YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P...	29	6.3
31	ZDHC6_PONPY (Q5REH2) Probable palmitoyltransferase ZDHHC6 (EC 2....	29	6.3
32	ZDHC6_HUMAN (Q9H6R6) Probable palmitoyltransferase ZDHHC6 (EC 2....	29	6.3
33	IGHA1_HUMAN (P01876) Ig alpha-1 chain C region	28	8.2
34	MANB_CALSA (P22533) Beta-mannanase/endoglucanase A precursor [In...	28	8.2
35	GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (...	28	8.2
36	RW1_MOUSE (O70472) RW1 protein	28	8.2
37	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	28	8.2
38	LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)	28	8.2
39	CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro...	28	8.2
40	Y2082_MYCTU (Q10690) Hypothetical protein Rv2082	28	8.2
41	UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-intera...	28	8.2

>TECT3_MOUSE (Q8R2Q6) Tectonic-3 precursor|
          Length = 595

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = -3

Query: 390 LALLIALSLRDTGLPDPVQNSSPFPAS----PVAPTIPS----PSSSLLRAWTRRSAMDS 235
           L LL+ L L +T  P P   +  FP S    PV P +P+     SS     WT    +++
Sbjct: 8   LLLLVVLMLSETARPQPSSTARAFPTSWGLEPVTPEVPTSAPPDSSESPTPWTLSMPVNA 67

Query: 234 TRQPSAA 214
           T  P  A
Sbjct: 68  TTDPFPA 74

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>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)|
          Length = 926

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = -3

Query: 414  STSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDS 235
            +TS+P  + A + A +      P P Q S+P P  P +P +P+P+ +L++        + 
Sbjct: 818  ATSAPVPSPASIPAPATAQASAPTPTQASTPAPTEPPSP-VPTPTPALVQT-------EG 869

Query: 234  TRQPSAASWP 205
               P A+S P
Sbjct: 870  PANPGASSGP 879

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>PALB_NEUCR (Q7RZP7) Calpain-like protease palB/rim-13 (EC 3.4.22.-) (Cysteine|
           protease rim-13)
          Length = 986

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = -3

Query: 405 SPTNTLALLIALSLRDTGLPD-----PVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAM 241
           SPT  +A  + ++  D  LP         ++SP   SP +  +P  + ++  AWTRR+A 
Sbjct: 588 SPTPGVAQTLVIAQSDLPLPSYSFTLSFFSNSPLTISPASDPLPY-NETITGAWTRRTAG 646

Query: 240 DSTRQPSAASWP 205
            ST  PS  + P
Sbjct: 647 GSTVYPSYVTNP 658

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>DNAK_PHOLL (Q7N8Y4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 200 AKGQDAADGCRVESMADLLVQARSKLLE---GDGMVGATGDAG 319
           AKG+D AD   +E+    LVQA +KLLE        GAT DAG
Sbjct: 576 AKGEDKAD---IEAKIQALVQASAKLLEIAQQQAQAGATADAG 615

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>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor|
          Length = 551

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 408 SSPTNTLALL--IALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDS 235
           S+P    A L  +A S    G+P P+  S   P+S   P+ PSPS +L  +    +  + 
Sbjct: 223 STPQGKPATLTPVASSAETQGMPSPMPPSPASPSSSPFPSSPSPSPALQPSGPSAAGTED 282

Query: 234 T--RQPSAASWPL 202
           T  R P+++S  L
Sbjct: 283 TTGRGPTSSSTEL 295

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>GLND_STRCO (O69873) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 835

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -3

Query: 432 LLMPAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSS 274
           L + AF T  P         L+LR     +P  +S+P P+SP +P+ PSP SS
Sbjct: 593 LAVEAFRTGGPV--------LALR--AQTEPPADSAPAPSSPSSPSFPSPLSS 635

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>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor|
          Length = 572

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSSLL 268
           P P  ++SP PAS  +PT+ +PS SL+
Sbjct: 328 PSPSSSTSPSPASSPSPTLSTPSPSLM 354

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>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -3

Query: 414 STSSPTN-----TLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRR 250
           S SSP++     +L+L ++ S  DT L      SS F  SP  PT+ SPS + L + +  
Sbjct: 163 SLSSPSSLLVSSSLSLSLSSSYSDTKLFSFDSRSSIF--SPSTPTVISPSYTYLSSISAT 220

Query: 249 SAMDSTRQPSAASW 208
           S   ST    ++SW
Sbjct: 221 SFQISTTSELSSSW 234

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>GRLF1_HUMAN (Q9NRY4) Glucocorticoid receptor DNA-binding factor 1 (Glucocorticoid|
            receptor repression factor 1) (GRF-1) (Rho GAP p190A)
            (p190-A)
          Length = 1513

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 414  STSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSP 283
            S S+  +T+  L +  +  T  P P Q+  P P SP+ P +PSP
Sbjct: 1451 SPSAVASTVPFLTSTPV--TSQPSPPQSPPPTPQSPMQPLLPSP 1492

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>HES2_MOUSE (O54792) Transcription factor HES-2 (Hairy and enhancer of split 2)|
          Length = 157

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 429 LMPAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSP-SSSLLRAW 259
           ++PA S   P  +  LL  L  R      P     P PA   +P +P P SS L R W
Sbjct: 100 VLPACSVLEPAVSARLLEHLRQRTVSDDSPSLTLPPAPAPAPSPPVPPPGSSGLWRPW 157

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>NR5A2_MOUSE (P45448) Orphan nuclear receptor NR5A2 (Liver receptor homolog 1)|
           (LRH-1)
          Length = 560

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 426 MPAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSL 271
           MP+  TS+  N  +    L L    LP    + SPF  SP++ T+P P SSL
Sbjct: 224 MPSDLTSAIQNIHSASKGLPLSHVALPPTDYDRSPFVTSPISMTMP-PHSSL 274

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>SMAD5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SMAD 5)|
           (Mothers against DPP homolog 5) (Smad5)
          Length = 465

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 333 NSSPFPASPVAPTIPSPSSS 274
           NS+PFP SP +P  PSP+SS
Sbjct: 181 NSTPFPLSPNSPYPPSPASS 200

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>RUVA_CAUCR (Q9A3G7) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 205

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 390 LALLIALSLRDTGLPD-PVQNSSPFPASPVAPTIPSPSSSLLRA 262
           LAL I   L+D  + D PV  S+P  ++P AP  P+P+   + A
Sbjct: 121 LALRIVTELKDKPITDGPVLMSAPTSSAPSAPAKPAPTGDAVAA 164

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>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 315

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 378 IALSLRDTGLPDPVQNSSPFPASPVA-PTIPSPSSSLLRAWTRRSAM 241
           +A S+R  G+P P   ++ F A     PT+P+P+   L AW RR  +
Sbjct: 169 LAFSVR-RGVPIPPSLANIFAAVRATYPTLPAPAHGCLEAWARRGVL 214

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>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 378 IALSLRDTGLPDPVQNSSPFPASPVA-PTIPSPSSSLLRAWTRRSAM 241
           +A S+R  G+P P   ++ F A     PT+P+P+   L AW RR  +
Sbjct: 170 LAFSVR-RGVPIPPSLANIFAAVRATYPTLPAPAHGCLEAWARRGVL 215

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>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)|
          Length = 647

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 351 LPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQP 223
           LP P   S   PA P AP + SP  SLL A   +  +     P
Sbjct: 244 LPGPSDGSGAAPAQPSAPPVASPLPSLLPAQPMQPVIQYVHPP 286

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>BLYA_BACSU (O31982) N-acetylmuramoyl-L-alanine amidase blyA (EC 3.5.1.28)|
           (Cell wall hydrolase) (Autolysin)
          Length = 367

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 315 ASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAASW 208
           ASP  PT  SPSSS   + + +S +D  R  S  SW
Sbjct: 185 ASPTKPTTSSPSSSSAVSGSLKSKVDGLRFYSKPSW 220

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>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 420 AFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSP------SSSLLRAW 259
           A  T+ P N    + A       +P P+QN++P P++   P++ SP      +S+   A 
Sbjct: 346 AGKTNPPVNPTIKVTA------AIPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAP 399

Query: 258 TRRSAMDSTRQPSAAS 211
              S + ST +PS A+
Sbjct: 400 ASASPLASTLKPSTAN 415

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>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related|
           protein E74B)
          Length = 883

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 414 STSSPTNTLALLIALSLRDTGLPDPVQNSSPFP-ASPVAPTIPSPSSS 274
           S+SS +++ +   +LSL  +     + +++P P ASPV PT P P+++
Sbjct: 27  SSSSSSSSSSSSSSLSLSSSSSSSSLSSATPTPVASPVTPTSPPPAAA 74

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>YGF6_YEAST (P53172) Hypothetical 58.1 kDa protein in UBC2-OLE1 intergenic|
           region
          Length = 527

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
 Frame = -3

Query: 435 FLLMPAFSTSSPTNTLALLIALSLRDTGLPDPVQN---------SSPFPASPVAPTIPSP 283
           F +   + TSS   T A L+A       +  P  N         SSP P++P   T+PS 
Sbjct: 355 FPIFHVYPTSSLARTFAKLVATKSHRLWIVQPNDNQPTASSEKSSSPSPSTPPVTTLPSL 414

Query: 282 SSS 274
           +SS
Sbjct: 415 ASS 417

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>SMAD5_MOUSE (P97454) Mothers against decapentaplegic homolog 5 (SMAD 5)|
           (Mothers against DPP homolog 5) (Smad5) (mSmad5)
           (Dwarfin-C) (Dwf-C)
          Length = 465

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 333 NSSPFPASPVAPTIPSPSSS 274
           N++PFP SP +P  PSP+SS
Sbjct: 181 NNAPFPLSPNSPYPPSPASS 200

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>SMAD5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (SMAD 5)|
           (Mothers against DPP homolog 5) (Smad5) (hSmad5) (JV5-1)
          Length = 465

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 333 NSSPFPASPVAPTIPSPSSS 274
           N++PFP SP +P  PSP+SS
Sbjct: 181 NNTPFPLSPNSPYPPSPASS 200

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>Y674_TREPA (O83680) Hypothetical protein TP0674|
          Length = 202

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 83  GCRRAGPRPATFSASRRGSLPESR 12
           G RRA  R AT  A RRG+LP S+
Sbjct: 35  GARRAAVRSATVRARRRGALPSSQ 58

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>KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 655

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -3

Query: 432 LLMPAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTR 253
           L+  AFS S+ ++ +  L  ++   T   DPVQ+  P     +A  +P+PS+ L R + R
Sbjct: 285 LIGVAFSQSNVSSYVVDLTRVTRTGTVARDPVQDHRP-----LAQPLPNPSAPLRRIYER 339

Query: 252 RSAMDSTRQ 226
            S   S  Q
Sbjct: 340 PSTTCSKPQ 348

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>NR5A2_RAT (Q9QWM1) Orphan nuclear receptor NR5A2 (Liver receptor homolog 1)|
           (LRH-1) (FTZ-F1 beta)
          Length = 560

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 426 MPAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSL 271
           MP+  TS+  N  +    L L    LP    + SPF  SP++ T+P P  SL
Sbjct: 224 MPSDLTSAIQNIHSASKGLPLSHVALPPTDYDRSPFVTSPISMTMP-PHGSL 274

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>LIPB1_MOUSE (Q8C8U0) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein binding protein 1)
           (PTPRF-interacting protein binding protein 1)
          Length = 969

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 372 LSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTR-RSAMDSTRQPSAASWP 205
           L+L  T      Q +SPFP SP +P     S  ++R + + R +  +T  P   S P
Sbjct: 515 LNLAGTSRSKGSQGTSPFPMSPPSPDSRKKSRGIMRLFGKLRRSQSTTFNPDDMSEP 571

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>ZDHC6_MOUSE (Q9CPV7) Probable palmitoyltransferase ZDHHC6 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 6) (DHHC-6) (H4
           homolog)
          Length = 413

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 WSPRPSAEQLTFSCVAGCSDHPITFEQLAPRLDEKV 248
           WS  P  + L +    GC  + +T EQL  + D++V
Sbjct: 278 WSGVPEGDGLEWPIREGCDQYSLTIEQLKQKADKRV 313

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>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 348 PDPVQNSSPFPASPVAPTIPSPS 280
           P+P   S+P PAS  AP +P PS
Sbjct: 431 PEPDPASAPAPASAPAPVVPQPS 453

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>IRF2_MOUSE (P23906) Interferon regulatory factor 2 (IRF-2)|
          Length = 349

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 429 LMPAFSTSSPTNTLALLIALSLRDTGLPDPVQNS-SPFPASPV-APTIPSPSSSLLRAWT 256
           L+P+ +T   +N   L +  ++++   P P  +S  PF   P+ AP  P+PSSS     T
Sbjct: 273 LLPSMATFVTSNKPDLQV--TIKEDSCPMPYNSSWPPFTDLPLPAPVTPTPSSSRPDRET 330

Query: 255 RRSAMDST 232
           R S +  T
Sbjct: 331 RASVIKKT 338

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>YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P11E10.02c|
           precursor
          Length = 1082

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
 Frame = -3

Query: 411 TSSPTNTLALLIAL--SLRDTGLP--DPVQNSSPFPASPVAPTIPSPSSSLL 268
           +S P++ L+LL     ++R T     D + ++SP  +S ++P++ SP+SS+L
Sbjct: 333 SSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVISPSVSSPTSSIL 384

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>ZDHC6_PONPY (Q5REH2) Probable palmitoyltransferase ZDHHC6 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 6) (DHHC-6)
          Length = 413

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 WSPRPSAEQLTFSCVAGCSDHPITFEQLAPRLDEKV 248
           WS  P  + L +    GC  + +T EQL  + D++V
Sbjct: 278 WSGVPEGDGLEWPVREGCHQYSLTIEQLKQKADKRV 313

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>ZDHC6_HUMAN (Q9H6R6) Probable palmitoyltransferase ZDHHC6 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 6) (DHHC-6) (Zinc
           finger protein 376) (Transmembrane protein H4)
          Length = 413

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 WSPRPSAEQLTFSCVAGCSDHPITFEQLAPRLDEKV 248
           WS  P  + L +    GC  + +T EQL  + D++V
Sbjct: 278 WSGVPEGDGLEWPVREGCHQYSLTIEQLKQKADKRV 313

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>IGHA1_HUMAN (P01876) Ig alpha-1 chain C region|
          Length = 353

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 363 RDTGLPDPVQNSSPFPASPVAPTIPSPSSSLLRAWTRRSAMDSTRQPSAAS 211
           +D  +P PV ++ P P SP  P  PSPS    R    R A++     S A+
Sbjct: 95  QDVTVPCPVPSTPPTP-SPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEAN 144

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>MANB_CALSA (P22533) Beta-mannanase/endoglucanase A precursor [Includes: Mannan|
           endo-1,4-beta-mannosidase A (EC 3.2.1.78)
           (Beta-mannanase) (Endo-1,4-mannanase);
           Endo-1,4-beta-glucanase (EC 3.2.1.4) (Cellulase)]
          Length = 1331

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 423 PAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTI---PSPS 280
           P+ +T SPT+T  + +  +   T  P P    +P P     PT+   P+P+
Sbjct: 718 PSGTTPSPTSTPTVTVTPTPTPTPTPTPTPTVTPTPTVTPTPTVTATPTPT 768

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>GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (Glial cells|
           missing homolog 1) (GCM motif protein 1) (mGCMa) (mGCM1)
          Length = 436

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   IPAEIPGETPAAMPRRWQVWGRPDG 79
           +P ++P E PAA P    +W  P G
Sbjct: 337 LPQQVPSEPPAAQPGCHPLWSNPGG 361

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>RW1_MOUSE (O70472) RW1 protein|
          Length = 1829

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 426  MPAFSTSSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSSS 274
            +P    SS T++L  L +L   +  +    + +SP PASP  PT P P +S
Sbjct: 1516 VPVHKPSSSTDSLYKL-SLQTLNADIFLKQRQTSPTPASPSLPTAPCPFTS 1565

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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 354 GLPDPVQNSSPFPASPVAPTIPSP 283
           G P P  + SP P SP  P+ PSP
Sbjct: 6   GTPPPPPSESPPPPSPPPPSTPSP 29

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>LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)|
          Length = 1612

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 393  TLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPS--PSSSLL 268
            T++LL+      T  P P  +SSP PA+ VA T+ +  P   LL
Sbjct: 927  TISLLLERETGGTYPPSPPPHSSPTPAATVAATVSTAVPGEPLL 970

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>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 354 GLPDPVQNSSPFPASPVAPTIPSP 283
           G P P  + SP P SP  P+ PSP
Sbjct: 6   GTPPPPPSESPPPPSPPPPSTPSP 29

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>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082|
          Length = 721

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 408 SSPTNTLALLIALSLRDTGLPDPVQNSSPFPASPVAPTIPSPSS 277
           +SP  T  ++++ S   +G P     +SPF  +P+ P  P P +
Sbjct: 231 TSPFGTAPMVLSSSSTSSGPPTAPTPTSPFGTAPMPPGPPPPGT 274

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>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 348 PDPVQNSSPFPASPVAPTIPSPSSS 274
           PDP    S  PASP  P  PS S S
Sbjct: 102 PDPASAPSTTPASPATPAQPSTSGS 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,023,961
Number of Sequences: 219361
Number of extensions: 873423
Number of successful extensions: 4896
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4856
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result