ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 5e-19
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
3gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
4gb|AF222559.1|AF222559 Perdix dauuricae NADH dehydrogenase subun... 48 0.025
5gb|AF543249.1| Columnea eubracteata internal transcribed spacer ... 42 1.6
6gb|AF543247.1| Columnea isernii internal transcribed spacer 1, p... 42 1.6
7gb|AF543246.1| Columnea erythrophaea internal transcribed spacer... 42 1.6
8gb|AF543244.1| Columnea zebrina internal transcribed spacer 1, p... 42 1.6
9gb|AF543243.1| Columnea minor internal transcribed spacer 1, par... 42 1.6
10gb|AF543241.1| Columnea sulfurea internal transcribed spacer 1, ... 42 1.6
11gb|AF543240.1| Columnea linearis internal transcribed spacer 1, ... 42 1.6
12emb|AL583841.16| Human DNA sequence from clone RP11-556L2 on chr... 42 1.6
13gb|AF411806.1| Lycopersicon esculentum BAC clone Clemson_Id 2O7,... 42 1.6
14gb|AY047092.1| Columnea spathulata internal transcribed spacer 1... 42 1.6
15ref|NM_119608.3| Arabidopsis thaliana ATSWI3C; DNA binding / tra... 40 6.2
16ref|NM_179233.1| Arabidopsis thaliana ATSWI3C; DNA binding / tra... 40 6.2
17ref|NM_179232.1| Arabidopsis thaliana ATSWI3C; DNA binding / tra... 40 6.2
18ref|NM_202953.1| Arabidopsis thaliana ATSWI3C; DNA binding / tra... 40 6.2
19gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.2
20gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, comp... 40 6.2
21gb|AC122548.10| Mus musculus chromosome 19, clone RP23-273O15, c... 40 6.2
22gb|AC069560.26| Mus musculus strain 129/Sv clone ct7-22f10 map 2... 40 6.2
23gb|AF539641.1| Cercopithecine herpesvirus 8 US28 locus, complete... 40 6.2
24gb|AY186194.1| Rhesus cytomegalovirus strain 68-1, complete genome 40 6.2
25gb|AY074306.1| Arabidopsis thaliana unknown protein (At4g34420) ... 40 6.2
26gb|DQ120516.1| Cercopithecine herpesvirus 8 isolate CMV 180.92, ... 40 6.2
27emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ... 40 6.2
28emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, B... 40 6.2
29gb|AC119041.6| Homo sapiens X BAC RP11-585K14 (Roswell Park Canc... 40 6.2
30gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X... 40 6.2
31gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 6.2
32gb|AY204464.1| Myxococcus xanthus clone C1147 extensin-like prot... 40 6.2
33gb|AF055579.2|AF055579 Streptomyces antibioticus putative 3-keto... 40 6.2
34gb|AF222560.1|AF222560 Perdix perdix NADH dehydrogenase subunit ... 40 6.2
35emb|BX649317.5| Mouse DNA sequence from clone RP23-415G15 on chr... 40 6.2
36gb|AF237894.1|AF237894S1 Streptomyces antibioticus Tu99 oleandom... 40 6.2
37dbj|AK117284.1| Arabidopsis thaliana At4g34430 mRNA for unknown ... 40 6.2
38gb|AF068635.1|AF068635 Chlamydomonas reinhardtii protoporphyrino... 40 6.2
39gb|J00016.1|BOVPOMC3 Bovine proopiomelanocortin (POMC) gene, exo... 40 6.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                           
Query: 179     ccgtacagttgcccgccccgaaccctagccatttcgcgccccgaggtatccgcccccctg 238
               |||||| | ||||||| ||||||||| |||||||| | || |||||||||||||||||||
Sbjct: 8162669 ccgtaccgctgcccgcgccgaaccctcgccatttctccccgcgaggtatccgcccccctg 8162728

                                       
Query: 239     tacctctagtgttaatacttttgg 262
               |||||||||||||||| |||||||
Sbjct: 8162729 tacctctagtgttaatgcttttgg 8162752



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                       
Query: 61      cccccaatttcccttctcttccccggcgacgtccccaagc 100
               |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 8162549 cccccaatttccctcctctcccccggcgacgtccccaagc 8162588
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                           
Query: 179     ccgtacagttgcccgccccgaaccctagccatttcgcgccccgaggtatccgcccccctg 238
               |||||| | ||||||| ||||||||| |||||||| | || |||||||||||||||||||
Sbjct: 8160504 ccgtaccgctgcccgcgccgaaccctcgccatttctccccgcgaggtatccgcccccctg 8160563

                                       
Query: 239     tacctctagtgttaatacttttgg 262
               |||||||||||||||| |||||||
Sbjct: 8160564 tacctctagtgttaatgcttttgg 8160587



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                       
Query: 61      cccccaatttcccttctcttccccggcgacgtccccaagc 100
               |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 8160384 cccccaatttccctcctctcccccggcgacgtccccaagc 8160423
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                         
Query: 179   ccgtacagttgcccgccccgaaccctagccatttcgcgccccgaggtatccgcccccctg 238
             |||||| | ||||||| ||||||||| |||||||| | || |||||||||||||||||||
Sbjct: 94099 ccgtaccgctgcccgcgccgaaccctcgccatttctccccgcgaggtatccgcccccctg 94158

                                     
Query: 239   tacctctagtgttaatacttttgg 262
             |||||||||||||||| |||||||
Sbjct: 94159 tacctctagtgttaatgcttttgg 94182



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 61    cccccaatttcccttctcttccccggcgacgtccccaagc 100
             |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 93979 cccccaatttccctcctctcccccggcgacgtccccaagc 94018
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>gb|AF222559.1|AF222559 Perdix dauuricae NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial gene for mitochondrial product
          Length = 1041

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 58  ctccccccaatttcccttctcttc 81
           ||||||||||||||||||||||||
Sbjct: 406 ctccccccaatttcccttctcttc 429
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>gb|AF543249.1| Columnea eubracteata internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>gb|AF543247.1| Columnea isernii internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>gb|AF543246.1| Columnea erythrophaea internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>gb|AF543244.1| Columnea zebrina internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>gb|AF543243.1| Columnea minor internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 621

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 411 cccctccccccaatttccctt 431
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>gb|AF543241.1| Columnea sulfurea internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>gb|AF543240.1| Columnea linearis internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>emb|AL583841.16| Human DNA sequence from clone RP11-556L2 on chromosome 9 Contains part
             of the ROR2 gene for receptor tyrosine kinase-like orphan
             receptor, complete sequence
          Length = 192799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 138   ccacaccaccccacggctccccgct 162
             |||||||||||||| ||||||||||
Sbjct: 89258 ccacaccaccccacagctccccgct 89282
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>gb|AF411806.1| Lycopersicon esculentum BAC clone Clemson_Id 2O7, partial sequence
          Length = 61382

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     ctcatctctctctactttctc 28
             |||||||||||||||||||||
Sbjct: 25982 ctcatctctctctactttctc 25962
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>gb|AY047092.1| Columnea spathulata internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 620

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  cccctccccccaatttccctt 75
           |||||||||||||||||||||
Sbjct: 412 cccctccccccaatttccctt 432
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>ref|NM_119608.3| Arabidopsis thaliana ATSWI3C; DNA binding / transcription factor/
          zinc ion binding AT4G34430 (ATSWI3C) transcript variant
          AT4G34430.3 mRNA, complete cds
          Length = 3429

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 cccccaatttcccttctcttcccc 84
          ||||||||||| ||||||||||||
Sbjct: 49 cccccaatttcgcttctcttcccc 26
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>ref|NM_179233.1| Arabidopsis thaliana ATSWI3C; DNA binding / transcription factor/
          zinc ion binding AT4G34430 (ATSWI3C) transcript variant
          AT4G34430.2 mRNA, complete cds
          Length = 3435

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 cccccaatttcccttctcttcccc 84
          ||||||||||| ||||||||||||
Sbjct: 49 cccccaatttcgcttctcttcccc 26
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>ref|NM_179232.1| Arabidopsis thaliana ATSWI3C; DNA binding / transcription factor/
          zinc ion binding AT4G34430 (ATSWI3C) transcript variant
          AT4G34430.1 mRNA, complete cds
          Length = 3362

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 cccccaatttcccttctcttcccc 84
          ||||||||||| ||||||||||||
Sbjct: 51 cccccaatttcgcttctcttcccc 28
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>ref|NM_202953.1| Arabidopsis thaliana ATSWI3C; DNA binding / transcription factor/
          zinc ion binding AT4G34430 (ATSWI3C) transcript variant
          AT4G34430.4 mRNA, complete cds
          Length = 3440

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 cccccaatttcccttctcttcccc 84
          ||||||||||| ||||||||||||
Sbjct: 51 cccccaatttcgcttctcttcccc 28
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    cacccgcgccccacccgggc 365
              ||||||||||||||||||||
Sbjct: 148772 cacccgcgccccacccgggc 148791
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>gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, complete sequence
          Length = 188453

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tgttaatacttttggttttg 267
             ||||||||||||||||||||
Sbjct: 70922 tgttaatacttttggttttg 70903
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>gb|AC122548.10| Mus musculus chromosome 19, clone RP23-273O15, complete sequence
          Length = 189169

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 6      tactcatctctctctactttctcc 29
              ||||||||||||||| ||||||||
Sbjct: 128375 tactcatctctctctcctttctcc 128352
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>gb|AC069560.26| Mus musculus strain 129/Sv clone ct7-22f10 map 2, complete sequence
          Length = 118824

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   tccccccaatttcccttctc 78
            ||||||||||||||||||||
Sbjct: 6376 tccccccaatttcccttctc 6357
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>gb|AF539641.1| Cercopithecine herpesvirus 8 US28 locus, complete sequence
          Length = 7091

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  tgttaatacttttggttttg 267
            ||||||||||||||||||||
Sbjct: 2616 tgttaatacttttggttttg 2635
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>gb|AY186194.1| Rhesus cytomegalovirus strain 68-1, complete genome
          Length = 221454

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    tgttaatacttttggttttg 267
              ||||||||||||||||||||
Sbjct: 210924 tgttaatacttttggttttg 210943
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>gb|AY074306.1| Arabidopsis thaliana unknown protein (At4g34420) mRNA, complete
          cds
          Length = 3386

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 cccccaatttcccttctcttcccc 84
          ||||||||||| ||||||||||||
Sbjct: 51 cccccaatttcgcttctcttcccc 28
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>gb|DQ120516.1| Cercopithecine herpesvirus 8 isolate CMV 180.92, complete genome
          Length = 215678

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    tgttaatacttttggttttg 267
              ||||||||||||||||||||
Sbjct: 205126 tgttaatacttttggttttg 205145
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>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     cccccaatttcccttctcttcccc 84
              ||||||||||| ||||||||||||
Sbjct: 106667 cccccaatttcgcttctcttcccc 106644
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>emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project)
          Length = 114367

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    cccccaatttcccttctcttcccc 84
             ||||||||||| ||||||||||||
Sbjct: 98148 cccccaatttcgcttctcttcccc 98125
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>gb|AC119041.6| Homo sapiens X BAC RP11-585K14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    cccccaatttcccttctctt 80
             ||||||||||||||||||||
Sbjct: 22813 cccccaatttcccttctctt 22794
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>gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X, complete sequence
          Length = 180322

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    cccccaatttcccttctctt 80
             ||||||||||||||||||||
Sbjct: 10480 cccccaatttcccttctctt 10499
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    ttttggttttggggaggcgt 276
              ||||||||||||||||||||
Sbjct: 843720 ttttggttttggggaggcgt 843701
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>gb|AY204464.1| Myxococcus xanthus clone C1147 extensin-like protein gene, partial
           cds; and adventurous gliding motility protein E (agmE)
           gene, complete cds
          Length = 2393

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgccgcggccaccagccggg 427
           ||||||||||||||||||||
Sbjct: 605 tgccgcggccaccagccggg 624
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>gb|AF055579.2|AF055579 Streptomyces antibioticus putative 3-ketoreductase (oleW),
            2,3-dehydratase (oleV), dTDP-4-keto-6-deoxyglucose
            3,5-epimerase (oleL), dTDP-D-glucose synthase (oleS),
            dehydratase (oleE), 4-ketoreductase (oleU), dehydratase
            (oleNI), reductase (oleT), glycosyltransferase OleI
            (oleI), aminotransferase (oleN2), and glycosidase OleR
            (oleR) genes, complete cds
          Length = 15052

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  accaccccacggctccccgc 161
            ||||||||||||||||||||
Sbjct: 6387 accaccccacggctccccgc 6406
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>gb|AF222560.1|AF222560 Perdix perdix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial gene for mitochondrial product
          Length = 1041

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 58  ctccccccaatttcccttctcttc 81
           ||||||||||| ||||||||||||
Sbjct: 406 ctccccccaatctcccttctcttc 429
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>emb|BX649317.5| Mouse DNA sequence from clone RP23-415G15 on chromosome 2, complete
              sequence
          Length = 199584

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tccccccaatttcccttctc 78
              ||||||||||||||||||||
Sbjct: 178411 tccccccaatttcccttctc 178430
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>gb|AF237894.1|AF237894S1 Streptomyces antibioticus Tu99 oleandomycin biosynthetic gene
            cluster, partial sequence
          Length = 9523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  accaccccacggctccccgc 161
            ||||||||||||||||||||
Sbjct: 5955 accaccccacggctccccgc 5974
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>dbj|AK117284.1| Arabidopsis thaliana At4g34430 mRNA for unknown protein, complete
          cds, clone: RAFL16-84-D11
          Length = 3426

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 cccccaatttcccttctcttcccc 84
          ||||||||||| ||||||||||||
Sbjct: 49 cccccaatttcgcttctcttcccc 26
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>gb|AF068635.1|AF068635 Chlamydomonas reinhardtii protoporphyrinogen oxidase precursor
           (Ppx1) mRNA, nuclear gene encoding chloroplast protein,
           complete cds
          Length = 2480

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 accccacggctccccgcttc 164
           ||||||||||||||||||||
Sbjct: 575 accccacggctccccgcttc 594
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>gb|J00016.1|BOVPOMC3 Bovine proopiomelanocortin (POMC) gene, exon 1, 5' UT mRNA
          Length = 354

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 ccccacggctccccgcttcc 165
           ||||||||||||||||||||
Sbjct: 69  ccccacggctccccgcttcc 88


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,944,179
Number of Sequences: 3902068
Number of extensions: 2944179
Number of successful extensions: 61341
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61174
Number of HSP's gapped (non-prelim): 167
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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