>ATL2M_ARATH (O82353) RING-H2 finger protein ATL2M|
          Length = 214

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 218 MHCIMPPAPPQAGAMRMVTVLGQEDSSSAMQGGLILRKQQDRVTY----PRRSRSSAVGL 385
           +H  +PP+PPQAG    +T LG   S +   G L+L       +Y      R R++AV  
Sbjct: 13  VHPPLPPSPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAV-- 70

Query: 386 DVLAKRKRESQGSSVVMPR 442
                     +G SV++PR
Sbjct: 71  -----ESTGDRGGSVILPR 84

>CRX_MOUSE (O54751) Cone-rod homeobox protein|
          Length = 299

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -2

Query: 461 ASTSLWDEA*PRCCLVILVSSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPA 282
           A+ S+W  A           S    P  QR+ L+ +G     A  A +  PAS +C  P+
Sbjct: 158 ATVSIWSPA-----------SEAPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPS 206

Query: 281 LGQSPSS 261
              SPSS
Sbjct: 207 AYASPSS 213

>CRX_HUMAN (O43186) Cone-rod homeobox protein|
          Length = 299

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -2

Query: 461 ASTSLWDEA*PRCCLVILVSSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPA 282
           A+ S+W  A           S    P  QR+ L+ +G     A  A +  PAS +C  P+
Sbjct: 158 ATVSIWSPA-----------SESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPS 206

Query: 281 LGQSPSS 261
              SPSS
Sbjct: 207 AYGSPSS 213

>CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein|
          Length = 299

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -2

Query: 461 ASTSLWDEA*PRCCLVILVSSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPA 282
           A+ S+W  A           S    P  QR+ L+ +G     A  A +  PAS +C  P+
Sbjct: 158 ATVSIWSPA-----------SESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPS 206

Query: 281 LGQSPSS 261
              SPSS
Sbjct: 207 AYGSPSS 213

>MCP_HUMAN (P15529) Membrane cofactor protein precursor (Trophoblast leukocyte|
           common antigen) (TLX) (CD46 antigen)
          Length = 392

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = -2

Query: 458 STSLWDEA*PRCCLVILVSSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPAL 279
           S S WD   P+C  V+  SS+  +P     S+  +     PA SA    P     Y P +
Sbjct: 272 SNSTWDPPVPKCLKVLPPSST--KPPALSHSVSTSSTTKSPASSASGPRPT----YKPPV 325

Query: 278 GQSPSSSRPPEEAL 237
              P   +P E  L
Sbjct: 326 SNYPGYPKPEEGIL 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,681,702
Number of Sequences: 219361
Number of extensions: 988073
Number of successful extensions: 2997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2995
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)