ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chr... 42 1.6
2ref|XM_788353.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
3ref|XM_778140.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
4emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC... 42 1.6
5emb|BX294019.1|NC100H1 Neurospora crassa DNA linkage group V Cos... 42 1.6
6dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.6
7emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC... 42 1.6
8ref|XM_479825.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
9ref|XM_609623.2| PREDICTED: Bos taurus similar to Galectin-3 bin... 40 6.4
10ref|XM_449870.1| Candida glabrata CBS138 hypothetical protein (C... 40 6.4
11gb|BC105367.1| Bos taurus similar to Galectin-3 binding protein ... 40 6.4
12emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 6.4
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
14dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
15dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
16dbj|AK103562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4

>emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the
             3' end of the C20orf101 gene, complete sequence
          Length = 133288

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   gcagcagcgtggtcatgcctc 440
             |||||||||||||||||||||
Sbjct: 24608 gcagcagcgtggtcatgcctc 24588



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>ref|XM_788353.1| PREDICTED: Strongylocentrotus purpuratus similar to Ras interacting
           protein 1 (LOC588682), partial mRNA
          Length = 2244

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 447 caaggaagtggaggctgcatt 467
           |||||||||||||||||||||
Sbjct: 819 caaggaagtggaggctgcatt 839



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>ref|XM_778140.1| PREDICTED: Strongylocentrotus purpuratus similar to myosin
            phosphatase-Rho interacting protein (LOC577942), mRNA
          Length = 4815

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 447  caaggaagtggaggctgcatt 467
            |||||||||||||||||||||
Sbjct: 2898 caaggaagtggaggctgcatt 2918



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>emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11,
              DP09G08, DP35C12 of chromosome 5  of Podospora anserina
          Length = 322194

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 252    cgggcgcgatgaggatggtga 272
              |||||||||||||||||||||
Sbjct: 235293 cgggcgcgatgaggatggtga 235273



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>emb|BX294019.1|NC100H1 Neurospora crassa DNA linkage group V Cosmid contig 100H1
          Length = 77124

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   gatagcagtagcgcgatgcag 310
             |||||||||||||||||||||
Sbjct: 68492 gatagcagtagcgcgatgcag 68512



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 149     gggcaactcgtcttcgcgctc 169
               |||||||||||||||||||||
Sbjct: 2587353 gggcaactcgtcttcgcgctc 2587333



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>emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC DP35C12 of chromosome 5 of
             Podospora anserina
          Length = 101256

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   cgggcgcgatgaggatggtga 272
             |||||||||||||||||||||
Sbjct: 86902 cgggcgcgatgaggatggtga 86922



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>ref|XM_479825.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2841

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 313  tggtctgatcttgcggaaacagca 336
            |||||||||||||| |||||||||
Sbjct: 2535 tggtctgatcttgcagaaacagca 2512



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>ref|XM_609623.2| PREDICTED: Bos taurus similar to Galectin-3 binding protein precursor
            (Lectin galactoside-binding soluble 3 binding protein)
            (Mac-2 binding protein) (Mac-2 BP) (MAC2BP)
            (Tumor-associated antigen 90K) (LOC531137), mRNA
          Length = 2381

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  tcccacaaggaagtggaggc 461
            ||||||||||||||||||||
Sbjct: 1134 tcccacaaggaagtggaggc 1153



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>ref|XM_449870.1| Candida glabrata CBS138 hypothetical protein (CAGL0M12144g) partial
            mRNA
          Length = 2916

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 444  ccacaaggaagtggaggctgcatt 467
            ||||||||||||| ||||||||||
Sbjct: 1992 ccacaaggaagtgaaggctgcatt 2015



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>gb|BC105367.1| Bos taurus similar to Galectin-3 binding protein precursor (Lectin
            galactoside-binding soluble 3 binding protein) (Mac-2
            binding protein) (Mac-2 BP) (MAC2BP) (Tumor-associated
            antigen 90K), mRNA (cDNA clone MGC:127786 IMAGE:7954620),
            complete cds
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  tcccacaaggaagtggaggc 461
            ||||||||||||||||||||
Sbjct: 1058 tcccacaaggaagtggaggc 1077



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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 444     ccacaaggaagtggaggctgcatt 467
               ||||||||||||| ||||||||||
Sbjct: 1213244 ccacaaggaagtgaaggctgcatt 1213267



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 313     tggtctgatcttgcggaaacagca 336
               |||||||||||||| |||||||||
Sbjct: 1109129 tggtctgatcttgcagaaacagca 1109106



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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   tggtctgatcttgcggaaacagca 336
             |||||||||||||| |||||||||
Sbjct: 22366 tggtctgatcttgcagaaacagca 22343



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>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_B05
          Length = 144799

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 313    tggtctgatcttgcggaaacagca 336
              |||||||||||||| |||||||||
Sbjct: 137656 tggtctgatcttgcagaaacagca 137633



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>dbj|AK103562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132K03, full
            insert sequence
          Length = 2839

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 313  tggtctgatcttgcggaaacagca 336
            |||||||||||||| |||||||||
Sbjct: 2533 tggtctgatcttgcagaaacagca 2510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,388,654
Number of Sequences: 3902068
Number of extensions: 2388654
Number of successful extensions: 43350
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43297
Number of HSP's gapped (non-prelim): 53
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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