>RBS_MUSAC (O24045) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 180

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +2

Query: 77  RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 256
           RASP  ++M VAP     S   +   RKP+  +S L   G ++          K W    
Sbjct: 15  RASPAQSSM-VAPFTGLKSASAFPVTRKPNADLSHLPSNGGRV-------QCMKVWPIEG 66

Query: 257 ARKFQFINFLSTLR 298
            +KF+ +++L T++
Sbjct: 67  VKKFETLSYLPTMK 80

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = +1

Query: 1    QGDRGATRRFPQSSPPLRPAPRTTVPRFAAVSGH-GRRPRRGGALWHVLPHKKEAF*PHQ 177
            +GDR   R  P +  P RP  R         SGH G R   GG  W           P++
Sbjct: 1047 EGDRQLQRTSPPARTPARPPERKAQIERHLESGHTGPRQSLGG--WQSQERLSGPQSPNR 1104

Query: 178  WPFTSW--CKDGWQLGIWQCYQG 240
             P  SW   K+G  LG W   +G
Sbjct: 1105 HPEKSWGSQKEGPSLGGWPELEG 1127

>ARFG3_MOUSE (Q9D8S3) ADP-ribosylation factor GTPase-activating protein 3 (ARF|
           GAP 3)
          Length = 525

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 113 PGEAAPSGMYYHTKRKPSDPISGLSLP----GAKMVGNWGFGSVTKDWESVNARKFQ 271
           PG+AAP+ +    K+KP+    GL       GA+ + N  F  + K  ++V+ RK Q
Sbjct: 203 PGKAAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQ 259

>RBS3_FRIAG (O22573) Ribulose bisphosphate carboxylase small chain 3,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 3)
          Length = 179

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +2

Query: 77  RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 256
           RA+P  A+M VAP     S   +   +KP+  +S L   G ++          K W  V 
Sbjct: 16  RAAPAQASM-VAPFVGLKSASAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVG 67

Query: 257 ARKFQFINFLSTL 295
            +KF+ +++L TL
Sbjct: 68  LKKFETLSYLPTL 80

>RBS_MANES (Q42915) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 182

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 77  RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 256
           R SP  A M VAP     S   + T RK +  I+ ++  G K+          K W ++ 
Sbjct: 16  RVSPAQATM-VAPFTGLKSTPVFPTTRKTNSDITSITSNGGKV-------QCMKVWPTLG 67

Query: 257 ARKFQFINFLSTLRK 301
            +KF+ +++L  L +
Sbjct: 68  MKKFETLSYLPPLTR 82

>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and|
            TIF2-associated modulatory protein)
          Length = 1277

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 26/111 (23%), Positives = 43/111 (38%)
 Frame = +2

Query: 125  APSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKP 304
            +PSG  + T+  P  P +  S PG++ +   GF      WE         +   +T   P
Sbjct: 1080 SPSGPTWSTQSDPQAPENHSSSPGSRSLQTGGFA-----WEGEVENN---VYSQATGVVP 1131

Query: 305  TQSYVACAEANMIYSSVEQTEQKKSEVLIILDSDNEDESMAAYKQLTPEKN 457
               Y   A +  +  +++Q EQ+K +   +LD            Q  P  N
Sbjct: 1132 QHKYHPTAGSYQLQFALQQLEQQKLQSRQLLDQSRARHQAIFGSQTLPNSN 1182

>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1371

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +2

Query: 254 NARKFQFINFLSTLRKPTQSYVACAEANMIYSSVEQTEQKKSEVLIILDSDNEDESMAAY 433
           +A     +N   T +  T++  ACA  + + SS+E+  Q+  + L++ +     +  AA 
Sbjct: 160 SAESESLVNGNHTAQPATRAPSACASHSSLVSSIEKDLQEIMDSLVLEEPGAAGKKPAAT 219

Query: 434 KQLTPEKNNSSHL 472
             L+P  N   +L
Sbjct: 220 SPLSPMANGGRYL 232

>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3163

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/86 (20%), Positives = 35/86 (40%)
 Frame = +2

Query: 158  KPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 337
            +  +P   L    A M+ +WG+  +T +     A   +   F S  ++    Y+A     
Sbjct: 2781 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2840

Query: 338  MIYSSVEQTEQKKSEVLIILDSDNED 415
             +Y   E  ++  ++ L  +  D ED
Sbjct: 2841 KLYLDKEPAQEDLTQYLQAIFEDYED 2866

>RBS1_BRANA (P05346) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 181

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 89  PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 268
           P+ A  VAP     S   +   RK ++ I+ +       V N G  S  K W  V  +KF
Sbjct: 15  PAQATMVAPFTGLKSSSAFPVTRKANNDITSI-------VSNGGRVSCMKVWPPVGKKKF 67

Query: 269 QFINFLSTL 295
           + +++L  L
Sbjct: 68  ETLSYLPDL 76

>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1377

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +2

Query: 242 WESVNARKFQFINFLSTLRKPTQSYVACAEANMIYSSVEQTEQKKSEVLIILDSDNEDES 421
           +  V A     +N   T +  T+   ACA  + + SS+E+  Q+  + L++ +     + 
Sbjct: 156 YSPVPAESESLVNGNHTPQTATRGPSACASHSSLVSSIEKDLQEIMDSLVLEEPGAAGKK 215

Query: 422 MAAYKQLTPEKNNSSHL 472
            AA   L+P  N   +L
Sbjct: 216 PAATSPLSPMANGGRYL 232

>CHK1_CAEBR (Q61RA2) Serine/threonine-protein kinase chk-1 (EC 2.7.11.1)|
          Length = 493

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 320 ACAEANMIYSSVEQT-EQKKSEVLIILDSDNEDESMAAYKQLTPEKNNSSHLRKQHLIHR 496
           A  E+N  Y  +    E    EVL+I+++ N D ++A  K     + N++++RK+ LI +
Sbjct: 18  APGESNECYRVIRTLGEGAFGEVLLIVNNKNPDMAVAMKKMQITTQANTNNIRKEFLIQQ 77

>POLG_PVMA (Q85197) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3059

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 20/91 (21%), Positives = 37/91 (40%)
 Frame = +2

Query: 167  DPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEANMIY 346
            +PI  L    A MV +WG+  +T +     A   +   + +        Y+A +    +Y
Sbjct: 2700 EPIHRLEAICASMVESWGYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKTLY 2759

Query: 347  SSVEQTEQKKSEVLIILDSDNEDESMAAYKQ 439
            ++V  T  +  +  I  D   ++E    Y Q
Sbjct: 2760 TNVHPTSTELEKYSIQFDEQMDEEDDMVYFQ 2790

>RBS2_FRIAG (O22572) Ribulose bisphosphate carboxylase small chain 2,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 2)
          Length = 179

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 83  SPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPG-AKMVGNWGFGSVTKDWESVNA 259
           S  + A  VAP +A+    +   K   + P++  ++ G + +  N G     K W  V  
Sbjct: 9   SSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGL 68

Query: 260 RKFQFINFLSTL 295
           +KF+ +++L TL
Sbjct: 69  KKFETLSYLPTL 80

>EDAR_HUMAN (Q9UNE0) Tumor necrosis factor receptor superfamily member EDAR|
           precursor (Anhidrotic ectodysplasin receptor 1)
           (Ectodysplasin-A receptor) (EDA-A1 receptor) (Ectodermal
           dysplasia receptor) (Downless homolog)
          Length = 448

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 8/127 (6%)
 Frame = +2

Query: 137 MYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNA--------RKFQFINFLST 292
           M+Y  K KPS P    S PG  +        V+KD E   A         K +F    +T
Sbjct: 207 MFYILKTKPSAPACCTSHPGKSVE-----AQVSKDEEKKEAPDNVVMFSEKDEFEKLTAT 261

Query: 293 LRKPTQSYVACAEANMIYSSVEQTEQKKSEVLIILDSDNEDESMAAYKQLTPEKNNSSHL 472
             KPT+S              E     ++E L+    D+++E         P+K  S  L
Sbjct: 262 PAKPTKS--------------ENDASSENEQLLSRSVDSDEEP-------APDKQGSPEL 300

Query: 473 RKQHLIH 493
               L+H
Sbjct: 301 CLLSLVH 307

>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3164

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 19/90 (21%), Positives = 36/90 (40%)
 Frame = +2

Query: 158  KPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 337
            +  +P   L    A M+ +WG+  +T +     A   +   F S  ++    Y+A     
Sbjct: 2782 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2841

Query: 338  MIYSSVEQTEQKKSEVLIILDSDNEDESMA 427
             +Y   E  ++  +  L  +  D ED + A
Sbjct: 2842 KLYLDKEPAQEDLTHYLQAIFEDYEDGTEA 2871

>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
          Length = 982

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 31  PQSSPPLRPAPRTTVPRFAAVSGHGRRPRRGGALWHVLPH 150
           P S PP  P  RT VP  A  +  G RP     L+  LPH
Sbjct: 824 PPSQPPPPPPARTCVPEHAMPTASGCRPNSDVDLF--LPH 861

>RBS2_BRANA (P27985) Ribulose bisphosphate carboxylase small chain F1,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit F1)
          Length = 181

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 89  PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 268
           P+ A  VAP     S   +   RK ++ I+ ++  G ++       S  K W  V  +KF
Sbjct: 15  PAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRV-------SCMKVWPPVGKKKF 67

Query: 269 QFINFLSTL 295
           + +++L  L
Sbjct: 68  ETLSYLPDL 76

>MUTL_RHIME (Q92RP4) DNA mismatch repair protein mutL|
          Length = 605

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 69  HSAALRRRQRPWTSPPARRRPLACITTQKGSLLTPSVAFHFLVQ 200
           H A  +R Q PW++  +  RPL      +G    P  AF    Q
Sbjct: 348 HRAGQQRPQEPWSAAASPHRPLRFEEAARGFAEAPQAAFSDFAQ 391

>EPHB3_CHICK (Q07498) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyrosine-protein|
           kinase receptor CEK10) (Fragment)
          Length = 988

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 361 LLDRAINHISFSTRHITLSGLTQSRKEIYKLELPSIHTF---PVLGNTAKSPIANHLCT 194
           L  R  +++ F  R + L+GLT+ R  I K+     +TF    V G ++KSP   H  +
Sbjct: 358 LCSRCDDNVEFVPRQLGLTGLTERRIYISKVMAHPQYTFEIQAVNGISSKSPYPPHFAS 416

>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (PBR- and PKA-associated protein 7) (Peripherial
           benzodiazepine receptor-asso
          Length = 524

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/55 (25%), Positives = 20/55 (36%)
 Frame = +2

Query: 62  QEPQCRASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFG 226
           + P    +PP      APG    SG     +        G +    +M  +WGFG
Sbjct: 24  ERPGAEGAPPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78

>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 1/4)
          Length = 179

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +2

Query: 80  ASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNA 259
           A+P  A+M VAP     S   +   +KP+  +S L   G ++          K W  V  
Sbjct: 17  AAPAQASM-VAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVGL 68

Query: 260 RKFQFINFLSTL 295
           +KF+ +++L TL
Sbjct: 69  KKFETLSYLPTL 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,866,880
Number of Sequences: 219361
Number of extensions: 1536917
Number of successful extensions: 5346
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5342
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)