ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
2dbj|AK068570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
3gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome... 208 1e-50
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 208 1e-50
5ref|NM_100845.2| Arabidopsis thaliana cysteine-type peptidase AT... 52 0.002
6gb|AY139772.1| Arabidopsis thaliana At1g09730/F21M12_12 mRNA seq... 52 0.002
7gb|AY128293.1| Arabidopsis thaliana At1g09730/F21M12_12 mRNA, co... 52 0.002
8gb|AC157505.2| Medicago truncatula chromosome 2 BAC clone mth2-1... 52 0.002
9gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis tha... 52 0.002
10dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone... 52 0.002
11ref|XM_740343.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.44
12gb|AC122031.2| Mus musculus BAC clone RP24-401P10 from 6, comple... 42 1.7
13gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, co... 42 1.7
14gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 40 6.8
15gb|AC163333.6| Mus musculus chromosome 1, clone RP24-98O21, comp... 40 6.8
16gb|AC146435.3| Pan troglodytes BAC clone RP43-15P23 from 7, comp... 40 6.8
17gb|AC147331.3| Pan troglodytes BAC clone RP43-10H17 from 7, comp... 40 6.8
18gb|AC146701.9| Mus musculus chromosome 10, clone RP24-142C15, co... 40 6.8
19ref|XM_618764.3| PREDICTED: Mus musculus RIKEN cDNA 4933403O03 g... 40 6.8
20ref|XM_972666.1| PREDICTED: Mus musculus hypothetical LOC214681 ... 40 6.8
21ref|XM_972624.1| PREDICTED: Mus musculus similar to double homeo... 40 6.8
22gb|AC004808.1| Homo sapiens PAC clone RP4-587D13 from 7, complet... 40 6.8
23emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in... 40 6.8
24gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome... 40 6.8
25emb|AL359739.8| Human DNA sequence from clone RP11-243M12 on chr... 40 6.8
26gb|AC106792.2| Homo sapiens chromosome 5 clone RP11-403M22, comp... 40 6.8
27gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map ... 40 6.8
28gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, comp... 40 6.8
29gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, comple... 40 6.8
30dbj|AK016643.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.8
31gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 6.8
32gb|AC099522.3| Homo sapiens chromosome 5 clone RP11-79P5, comple... 40 6.8
33emb|AL672230.6| Mouse DNA sequence from clone RP23-56L5 on chrom... 40 6.8
34emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-8... 40 6.8
35emb|BX470094.10| Mouse DNA sequence from clone RP23-130F16 on ch... 40 6.8
36emb|BX005373.14| Zebrafish DNA sequence from clone DKEY-221M4 in... 40 6.8
37gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.34... 40 6.8
38gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, comp... 40 6.8
39gb|AC170751.2| Mus musculus BAC clone CH25-484K21 from chromosom... 40 6.8 
>dbj|AK068965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169E19, full
            insert sequence
          Length = 3440

 Score =  343 bits (173), Expect = 3e-91
 Identities = 324/373 (86%), Gaps = 1/373 (0%)
 Strand = Plus / Plus

                                                                        
Query: 132  agtttatttttcccaaaacaatatttttctggcattgacgactttgaagacgttatctat 191
            ||||| |||||||| || ||||| ||||||| || ||| || |||||||| |||||||||
Sbjct: 952  agtttgtttttccctaagcaatacttttctgacactgaagaatttgaagatgttatctat 1011

                                                                        
Query: 192  cctaaaggagatccggatgctgtttctattagcagcagagatgttgatttgcttctacct 251
            || ||||||||||  ||||||||||| |||||||  |||||||||||  |||| ||||||
Sbjct: 1012 cccaaaggagatcatgatgctgtttccattagcaaaagagatgttgagctgctgctacct 1071

                                                                        
Query: 252  gagacatttgtcaatgacacaataattgacttttatatcaaatacttaagcacaagaatg 311
            || ||||||||||| || |||||||||||||||||| ||||  |||| ||||||||||| 
Sbjct: 1072 gaaacatttgtcaacgatacaataattgacttttatgtcaagcacttgagcacaagaatt 1131

                                                                        
Query: 312  aagaccacagagaagtgcaagttccacttctttaatagcttcttttttcgcaagctggct 371
             |  || | ||||||  || ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 1132 gaacccgctgagaagcacaggtatcacttctttaatagcttcttttttcgcaagctggct 1191

                                                                        
Query: 372  gatcttgacaaagatcaagggagagctccagagggtagatcagcttttttacgtgtccgc 431
            |||||||||||||||||||||||||||||||| |||||| |||||||  ||||||| |||
Sbjct: 1192 gatcttgacaaagatcaagggagagctccagaaggtagagcagctttcctacgtgtacgc 1251

                                                                        
Query: 432  aagtggacccg-aaaataaacatatttgcgaaggattttctatttattccagtgaacttc 490
            |||||||| || ||||||||||||||  ||||||| ||||| ||||||||||| ||||||
Sbjct: 1252 aagtggactcgtaaaataaacatattcacgaaggagtttctgtttattccagtaaacttc 1311

                         
Query: 491  agcttgcattgga 503
            | |||||||||||
Sbjct: 1312 aacttgcattgga 1324
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>dbj|AK068570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151G13, full
           insert sequence
          Length = 2906

 Score =  343 bits (173), Expect = 3e-91
 Identities = 324/373 (86%), Gaps = 1/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 132 agtttatttttcccaaaacaatatttttctggcattgacgactttgaagacgttatctat 191
           ||||| |||||||| || ||||| ||||||| || ||| || |||||||| |||||||||
Sbjct: 528 agtttgtttttccctaagcaatacttttctgacactgaagaatttgaagatgttatctat 587

                                                                       
Query: 192 cctaaaggagatccggatgctgtttctattagcagcagagatgttgatttgcttctacct 251
           || ||||||||||  ||||||||||| |||||||  |||||||||||  |||| ||||||
Sbjct: 588 cccaaaggagatcatgatgctgtttccattagcaaaagagatgttgagctgctgctacct 647

                                                                       
Query: 252 gagacatttgtcaatgacacaataattgacttttatatcaaatacttaagcacaagaatg 311
           || ||||||||||| || |||||||||||||||||| ||||  |||| ||||||||||| 
Sbjct: 648 gaaacatttgtcaacgatacaataattgacttttatgtcaagcacttgagcacaagaatt 707

                                                                       
Query: 312 aagaccacagagaagtgcaagttccacttctttaatagcttcttttttcgcaagctggct 371
            |  || | ||||||  || ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaacccgctgagaagcacaggtatcacttctttaatagcttcttttttcgcaagctggct 767

                                                                       
Query: 372 gatcttgacaaagatcaagggagagctccagagggtagatcagcttttttacgtgtccgc 431
           |||||||||||||||||||||||||||||||| |||||| |||||||  ||||||| |||
Sbjct: 768 gatcttgacaaagatcaagggagagctccagaaggtagagcagctttcctacgtgtacgc 827

                                                                       
Query: 432 aagtggacccg-aaaataaacatatttgcgaaggattttctatttattccagtgaacttc 490
           |||||||| || ||||||||||||||  ||||||| ||||| ||||||||||| ||||||
Sbjct: 828 aagtggactcgtaaaataaacatattcacgaaggagtttctgtttattccagtaaacttc 887

                        
Query: 491 agcttgcattgga 503
           | |||||||||||
Sbjct: 888 aacttgcattgga 900
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>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02,
             complete sequence
          Length = 75456

 Score =  208 bits (105), Expect = 1e-50
 Identities = 145/157 (92%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                         
Query: 336   cacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatcaagggaga 395
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38067 cacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatcaagggaga 38126

                                                                         
Query: 396   gctccagagggtagatcagcttttttacgtgtccgcaagtggacccg-aaaataaacata 454
             |||||||| |||||| |||||||  ||||||| ||||||||||| || ||||||||||||
Sbjct: 38127 gctccagaaggtagagcagctttcctacgtgtacgcaagtggactcgtaaaataaacata 38186

                                                  
Query: 455   tttgcgaaggattttctatttattccagtgaacttca 491
             ||  ||||||| ||||| ||||||||||| |||||||
Sbjct: 38187 ttcacgaaggagtttctgtttattccagtaaacttca 38223



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                         
Query: 174   tttgaagacgttatctatcctaaaggagatccggatgctgtttctattagcagcagagat 233
             |||||||| ||||||||||| ||||||||||  ||||||||||| |||||||  ||||||
Sbjct: 37748 tttgaagatgttatctatcccaaaggagatcatgatgctgtttccattagcaaaagagat 37807

                                                                        
Query: 234   gttgatttgcttctacctgagacatttgtcaatgacacaataattgacttttatatcaa 292
             |||||  |||| |||||||| ||||||||||| || |||||||||||||||||| ||||
Sbjct: 37808 gttgagctgctgctacctgaaacatttgtcaacgatacaataattgacttttatgtcaa 37866
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  208 bits (105), Expect = 1e-50
 Identities = 145/157 (92%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                           
Query: 336     cacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatcaagggaga 395
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6600013 cacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatcaagggaga 6600072

                                                                           
Query: 396     gctccagagggtagatcagcttttttacgtgtccgcaagtggacccg-aaaataaacata 454
               |||||||| |||||| |||||||  ||||||| ||||||||||| || ||||||||||||
Sbjct: 6600073 gctccagaaggtagagcagctttcctacgtgtacgcaagtggactcgtaaaataaacata 6600132

                                                    
Query: 455     tttgcgaaggattttctatttattccagtgaacttca 491
               ||  ||||||| ||||| ||||||||||| |||||||
Sbjct: 6600133 ttcacgaaggagtttctgtttattccagtaaacttca 6600169



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                           
Query: 174     tttgaagacgttatctatcctaaaggagatccggatgctgtttctattagcagcagagat 233
               |||||||| ||||||||||| ||||||||||  ||||||||||| |||||||  ||||||
Sbjct: 6599694 tttgaagatgttatctatcccaaaggagatcatgatgctgtttccattagcaaaagagat 6599753

                                                                          
Query: 234     gttgatttgcttctacctgagacatttgtcaatgacacaataattgacttttatatcaa 292
               |||||  |||| |||||||| ||||||||||| || |||||||||||||||||| ||||
Sbjct: 6599754 gttgagctgctgctacctgaaacatttgtcaacgatacaataattgacttttatgtcaa 6599812
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>ref|NM_100845.2| Arabidopsis thaliana cysteine-type peptidase AT1G09730 mRNA, complete
            cds
          Length = 3305

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 252  gagacatttgtcaatgacacaataattgacttttatat 289
            ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1378 gagacatttgtaaatgacacaatcattgacttctatat 1415



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 333  ttccacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatc 387
            ||||| |||||||| ||||| || || || || || |||||||||||||||||||
Sbjct: 1459 ttccatttctttaacagctttttcttccggaaactcgctgatcttgacaaagatc 1513
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>gb|AY139772.1| Arabidopsis thaliana At1g09730/F21M12_12 mRNA sequence
          Length = 2594

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 252 gagacatttgtcaatgacacaataattgacttttatat 289
           ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 147 gagacatttgtaaatgacacaatcattgacttctatat 184



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 333 ttccacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatc 387
           ||||| |||||||| ||||| || || || || || |||||||||||||||||||
Sbjct: 228 ttccatttctttaacagctttttcttccggaaactcgctgatcttgacaaagatc 282
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>gb|AY128293.1| Arabidopsis thaliana At1g09730/F21M12_12 mRNA, complete cds
          Length = 2594

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 252 gagacatttgtcaatgacacaataattgacttttatat 289
           ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 147 gagacatttgtaaatgacacaatcattgacttctatat 184



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 333 ttccacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatc 387
           ||||| |||||||| ||||| || || || || || |||||||||||||||||||
Sbjct: 228 ttccatttctttaacagctttttcttccggaaactcgctgatcttgacaaagatc 282
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>gb|AC157505.2| Medicago truncatula chromosome 2 BAC clone mth2-102e17, complete
             sequence
          Length = 93179

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                         
Query: 207   gatgctgtttctattagcagcagagatgttgatttgcttctacctgagacatttgtcaat 266
             |||||||||||||||||||  ||||||||||   |  | |  || |||||||| ||||||
Sbjct: 15200 gatgctgtttctattagcaagagagatgttgcacttttacagccagagacattcgtcaat 15141

                                       
Query: 267   gacacaataattgacttttatatcaa 292
             ||||| || ||||||||||| |||||
Sbjct: 15140 gacactatcattgacttttacatcaa 15115
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>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 146505

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 252   gagacatttgtcaatgacacaataattgacttttatat 289
             ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 38086 gagacatttgtaaatgacacaatcattgacttctatat 38049



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 333   ttccacttctttaatagcttcttttttcgcaagctggctgatcttgacaaagatc 387
             ||||| |||||||| ||||| || || || || || |||||||||||||||||||
Sbjct: 37818 ttccatttctttaacagctttttcttccggaaactcgctgatcttgacaaagatc 37764
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>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183,
             complete sequence
          Length = 70173

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 330   aagttccacttctttaatagcttcttttttcgcaagctggctgatcttgacaaa 383
             ||||| ||||| || || |||||||| ||||| ||||| |||||||||||||||
Sbjct: 17212 aagtttcactttttcaacagcttcttctttcggaagcttgctgatcttgacaaa 17159



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 174   tttgaagacgttatctatcctaaaggagatccggatgctgtttctattag 223
             ||||| || ||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 17929 tttgatgaggttatttatccaaaaggggagcctgatgctgtttctattag 17880
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>ref|XM_740343.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001090.02.0)
            partial mRNA
          Length = 5016

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 466  ttttctatttattccagtgaac 487
            ||||||||||||||||||||||
Sbjct: 1887 ttttctatttattccagtgaac 1866
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>gb|AC122031.2| Mus musculus BAC clone RP24-401P10 from 6, complete sequence
          Length = 157782

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 320   agagaagtgcaagttccacttcttt 344
             |||||||||||||||| ||||||||
Sbjct: 81134 agagaagtgcaagttcgacttcttt 81110
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>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence
          Length = 212404

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 260    tgtcaatgacacaataattga 280
              |||||||||||||||||||||
Sbjct: 165019 tgtcaatgacacaataattga 165039
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>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    tctttaatagcttctttttt 359
              ||||||||||||||||||||
Sbjct: 146123 tctttaatagcttctttttt 146104
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>gb|AC163333.6| Mus musculus chromosome 1, clone RP24-98O21, complete sequence
          Length = 128643

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   agaatgaagaccacagagaa 325
             ||||||||||||||||||||
Sbjct: 24249 agaatgaagaccacagagaa 24230
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>gb|AC146435.3| Pan troglodytes BAC clone RP43-15P23 from 7, complete sequence
          Length = 192805

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    tttgtcaatgacacaataat 277
              ||||||||||||||||||||
Sbjct: 102834 tttgtcaatgacacaataat 102815
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>gb|AC147331.3| Pan troglodytes BAC clone RP43-10H17 from 7, complete sequence
          Length = 189220

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   tttgtcaatgacacaataat 277
             ||||||||||||||||||||
Sbjct: 67312 tttgtcaatgacacaataat 67293
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>gb|AC146701.9| Mus musculus chromosome 10, clone RP24-142C15, complete sequence
          Length = 121683

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 384    gatcaagggagagctccagagggt 407
              |||||||| |||||||||||||||
Sbjct: 120323 gatcaaggaagagctccagagggt 120300



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 384    gatcaagggagagctccagagggt 407
              |||||||| |||||||||||||||
Sbjct: 115438 gatcaaggaagagctccagagggt 115415



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 384    gatcaagggagagctccagagggt 407
              |||||||| |||||||||||||||
Sbjct: 112644 gatcaaggaagagctccagagggt 112621
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>ref|XM_618764.3| PREDICTED: Mus musculus RIKEN cDNA 4933403O03 gene (4933403O03Rik),
            mRNA
          Length = 2179

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 384  gatcaagggagagctccagagggt 407
            |||||||| |||||||||||||||
Sbjct: 2042 gatcaaggaagagctccagagggt 2019
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>ref|XM_972666.1| PREDICTED: Mus musculus hypothetical LOC214681 (LOC214681), mRNA
          Length = 813

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 384 gatcaagggagagctccagagggt 407
           |||||||| |||||||||||||||
Sbjct: 676 gatcaaggaagagctccagagggt 653
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>ref|XM_972624.1| PREDICTED: Mus musculus similar to double homeobox 4c (LOC664783),
            mRNA
          Length = 2225

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 384  gatcaagggagagctccagagggt 407
            |||||||| |||||||||||||||
Sbjct: 2088 gatcaaggaagagctccagagggt 2065
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>gb|AC004808.1| Homo sapiens PAC clone RP4-587D13 from 7, complete sequence
          Length = 123397

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   tttgtcaatgacacaataat 277
             ||||||||||||||||||||
Sbjct: 91908 tttgtcaatgacacaataat 91889
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>emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in linkage group 3,
             complete sequence
          Length = 171119

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   aaaataaacatatttgcgaa 462
             ||||||||||||||||||||
Sbjct: 26812 aaaataaacatatttgcgaa 26793
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>gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome 14, complete sequence
          Length = 159361

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 134   tttatttttcccaaaacaatattt 157
             |||||||||| |||||||||||||
Sbjct: 69191 tttatttttcacaaaacaatattt 69214
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>emb|AL359739.8| Human DNA sequence from clone RP11-243M12 on chromosome 1 Contains a
              ribosomal protein S20 (RPS20) pseudogene, complete sequence
          Length = 170284

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    aagtgcaagttccacttctt 343
              ||||||||||||||||||||
Sbjct: 131414 aagtgcaagttccacttctt 131433
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>gb|AC106792.2| Homo sapiens chromosome 5 clone RP11-403M22, complete sequence
          Length = 84297

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 250   ctgagacatttgtcaatgacacaa 273
             |||| |||||||||||||||||||
Sbjct: 32837 ctgacacatttgtcaatgacacaa 32860
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>gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map 15q15, complete sequence
          Length = 181312

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    gacccaagtttatttttccc 145
              ||||||||||||||||||||
Sbjct: 134262 gacccaagtttatttttccc 134243
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>gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, complete sequence
          Length = 143792

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 250    ctgagacatttgtcaatgacacaa 273
              |||| |||||||||||||||||||
Sbjct: 141637 ctgacacatttgtcaatgacacaa 141614
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>gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, complete sequence
          Length = 179385

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    gctccagagggtagatcagc 415
              ||||||||||||||||||||
Sbjct: 154741 gctccagagggtagatcagc 154760
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>dbj|AK016643.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933403O03 product:hypothetical protein,
           full insert sequence
          Length = 1486

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 384 gatcaagggagagctccagagggt 407
           |||||||| |||||||||||||||
Sbjct: 677 gatcaaggaagagctccagagggt 654
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    tttatttttcccaaaacaat 153
              ||||||||||||||||||||
Sbjct: 551941 tttatttttcccaaaacaat 551960
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>gb|AC099522.3| Homo sapiens chromosome 5 clone RP11-79P5, complete sequence
          Length = 173073

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    gctccagagggtagatcagc 415
              ||||||||||||||||||||
Sbjct: 167194 gctccagagggtagatcagc 167175
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>emb|AL672230.6| Mouse DNA sequence from clone RP23-56L5 on chromosome X, complete
             sequence
          Length = 226781

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 136   tatttttcccaaaacaatattttt 159
             |||||| |||||||||||||||||
Sbjct: 31666 tattttacccaaaacaatattttt 31643
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>emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-895M11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 231490

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    ttttcccaaaacaatatttt 158
              ||||||||||||||||||||
Sbjct: 162351 ttttcccaaaacaatatttt 162370
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>emb|BX470094.10| Mouse DNA sequence from clone RP23-130F16 on chromosome X, complete
             sequence
          Length = 22724

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   cttctttaatagcttctttt 357
             ||||||||||||||||||||
Sbjct: 12029 cttctttaatagcttctttt 12048
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>emb|BX005373.14| Zebrafish DNA sequence from clone DKEY-221M4 in linkage group 25,
              complete sequence
          Length = 107914

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 406    gtagatcagcttttttacgtgtcc 429
              ||||||||||||||||| ||||||
Sbjct: 104883 gtagatcagcttttttaggtgtcc 104860
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>gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.349_A_8, complete sequence
          Length = 169045

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   aaggattttctatttattcc 480
             ||||||||||||||||||||
Sbjct: 41140 aaggattttctatttattcc 41121
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>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence
          Length = 171278

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   agaatgaagaccacagagaa 325
             ||||||||||||||||||||
Sbjct: 29946 agaatgaagaccacagagaa 29965
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>gb|AC170751.2| Mus musculus BAC clone CH25-484K21 from chromosome 10, complete
             sequence
          Length = 105368

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 384   gatcaagggagagctccagagggt 407
             |||||||| |||||||||||||||
Sbjct: 24923 gatcaaggaagagctccagagggt 24946



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 384   gatcaagggagagctccagagggt 407
             |||||||| |||||||||||||||
Sbjct: 22129 gatcaaggaagagctccagagggt 22152



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 384   gatcaagggagagctccagagggt 407
             |||||||| |||||||||||||||
Sbjct: 17244 gatcaaggaagagctccagagggt 17267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,892,066
Number of Sequences: 3902068
Number of extensions: 5892066
Number of successful extensions: 131532
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131357
Number of HSP's gapped (non-prelim): 171
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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