ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDde... 50 1e-06
2PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLD... 38 0.007
3PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLD... 37 0.012
4PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDb... 37 0.016
5PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDb... 34 0.10
6ISPH_THET8 (Q5SMC8) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 29 2.5
7ISPH_THET2 (Q72G65) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 29 2.5
8PROA_XYLFT (Q87EK9) Gamma-glutamyl phosphate reductase (GPR) (EC... 27 9.6

>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD|
           delta)
          Length = 868

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +3

Query: 252 VLLHGDLDLWVLEARLLPNMDMLSEHIRRCF 344
           +LLHGDLDL +++AR LPNMDM SEH+RR F
Sbjct: 10  MLLHGDLDLKIVKARRLPNMDMFSEHLRRLF 40



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>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD|
           gamma 3)
          Length = 866

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 225 DESPSPPKPVLLHGDLDLWVLEARLLPNMD 314
           D S    +  LLHG+LD+WV EA+ LPNMD
Sbjct: 33  DTSSGSLRVELLHGNLDIWVKEAKHLPNMD 62



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>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD|
           gamma 1) (Choline phosphatase) (Lipophosphodiesterase
           II) (Lecithinase D)
          Length = 858

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 255 LLHGDLDLWVLEARLLPNMD 314
           LLHG+LD+WV EA+ LPNMD
Sbjct: 39  LLHGNLDIWVKEAKHLPNMD 58



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>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta|
           1) (PLDbeta)
          Length = 967

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 246 KPVLLHGDLDLWVLEARLLPNMDMLSEHIRRCF 344
           K +L HG+LD+W+  A+ LPNMDM  + +   F
Sbjct: 150 KVLLSHGNLDIWIYHAKNLPNMDMFHKTLGDMF 182



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>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta|
           2) (PLDdelta1)
          Length = 915

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 246 KPVLLHGDLDLWVLEARLLPNMDM 317
           K +LLHG+LD+WV  A  LPN+D+
Sbjct: 111 KVLLLHGNLDIWVSCANNLPNLDL 134



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>ISPH_THET8 (Q5SMC8) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 340

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 317 HVHVGQQPRLEDPE-VEVPVQE 255
           H HVG+ PRL DP  VEVP  E
Sbjct: 161 HTHVGKDPRLADPRTVEVPDPE 182



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>ISPH_THET2 (Q72G65) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 340

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 317 HVHVGQQPRLEDPE-VEVPVQE 255
           H HVG+ PRL DP  VEVP  E
Sbjct: 161 HTHVGKDPRLADPRTVEVPDPE 182



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>PROA_XYLFT (Q87EK9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 425

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 270 LDLWVLEARLLPNMDMLSEHIRR 338
           LDL +L  R++PN+D   EHIRR
Sbjct: 312 LDL-ILAIRIVPNLDAALEHIRR 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.117    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,768,311
Number of Sequences: 219361
Number of extensions: 192727
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
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