ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 353 3e-94
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 353 3e-94
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 3e-94
4gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 145 2e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
8ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 84 5e-13
9ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 84 5e-13
10gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, comp... 84 5e-13
11gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like p... 84 5e-13
12gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence 76 1e-10
13dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 68 3e-08
14dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 64 4e-07
15dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, parti... 64 4e-07
16gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 62 2e-06
17gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complet... 60 7e-06
18emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC... 60 7e-06
19dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone... 52 0.002
20gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.11
21gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 44 0.42
22dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.42
23gb|AC006494.13| Drosophila melanogaster clone BACR48C17, complet... 42 1.6
24gb|AC008196.8| Drosophila melanogaster clone BACR30J14, complete... 42 1.6
25gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77... 42 1.6
26gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.5
27gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's ... 40 6.5
28gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, com... 40 6.5
29gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.5
30gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partia... 40 6.5
31gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 6.5
32emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chro... 40 6.5
33gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cance... 40 6.5
34gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.5
35gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, compl... 40 6.5
36gb|AC016736.6| Homo sapiens BAC clone RP11-393J17 from 2, comple... 40 6.5
37gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, comple... 40 6.5
38emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in ... 40 6.5
39gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer... 40 6.5
40gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.5 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  353 bits (178), Expect = 3e-94
 Identities = 291/328 (88%), Gaps = 3/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 156 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 216 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 273 cttatggccccaaggctggctcggcgtggtggagtcgatgagccatttgcttgggaaagc 332
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                                       
Query: 333 agggagtttctgaggaaactttgcgtaggaaaggaggtcacattcagagtggattacaca 392
           ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 476

                                                                       
Query: 393 gctcctaacatcgggcgagaatttggcactgtctacctcggcgacaagaacgttgcctac 452
           ||||| ||  | || ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 477 gctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctac 536

                                       
Query: 453 ttggtggttgctgcaggatgggcgaggg 480
           | | |  |||||||||||||||| ||||
Sbjct: 537 tcgataattgctgcaggatgggcaaggg 564
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           mRNA, complete cds
          Length = 2961

 Score =  353 bits (178), Expect = 3e-94
 Identities = 291/328 (88%), Gaps = 3/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 156 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 16  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75

                                                                       
Query: 216 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 76  atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135

                                                                       
Query: 273 cttatggccccaaggctggctcggcgtggtggagtcgatgagccatttgcttgggaaagc 332
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 136 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 195

                                                                       
Query: 333 agggagtttctgaggaaactttgcgtaggaaaggaggtcacattcagagtggattacaca 392
           ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 196 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 255

                                                                       
Query: 393 gctcctaacatcgggcgagaatttggcactgtctacctcggcgacaagaacgttgcctac 452
           ||||| ||  | || ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 256 gctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctac 315

                                       
Query: 453 ttggtggttgctgcaggatgggcgaggg 480
           | | |  |||||||||||||||| ||||
Sbjct: 316 tcgataattgctgcaggatgggcaaggg 343
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
           insert sequence
          Length = 3547

 Score =  353 bits (178), Expect = 3e-94
 Identities = 291/328 (88%), Gaps = 3/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 156 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 216 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 273 cttatggccccaaggctggctcggcgtggtggagtcgatgagccatttgcttgggaaagc 332
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                                       
Query: 333 agggagtttctgaggaaactttgcgtaggaaaggaggtcacattcagagtggattacaca 392
           ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 476

                                                                       
Query: 393 gctcctaacatcgggcgagaatttggcactgtctacctcggcgacaagaacgttgcctac 452
           ||||| ||  | || ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 477 gctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctac 536

                                       
Query: 453 ttggtggttgctgcaggatgggcgaggg 480
           | | |  |||||||||||||||| ||||
Sbjct: 537 tcgataattgctgcaggatgggcaaggg 564
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           gene, complete cds
          Length = 5478

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 156 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 45  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104

                                                                       
Query: 216 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164

                              
Query: 273 cttatggccccaaggctgg 291
           || ||||||||||||||||
Sbjct: 165 ctcatggccccaaggctgg 183



 Score =  113 bits (57), Expect = 5e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                       
Query: 364 aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 423
           |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 733 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 792

                                                                    
Query: 424 tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgaggg 480
           | |||||||| |||||||| |||||||||| | |  |||||||||||||||| ||||
Sbjct: 793 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaaggg 849



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                       
Query: 290 ggctcggcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 349
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 541 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 600

                            
Query: 350 actttgcgtaggaaagg 366
           ||| ||| |||||||||
Sbjct: 601 actctgcataggaaagg 617
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 156      ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
                ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827

                                                                            
Query: 216      atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
                |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767

                                   
Query: 273      cttatggccccaaggctgg 291
                || ||||||||||||||||
Sbjct: 19123766 ctcatggccccaaggctgg 19123748



 Score =  113 bits (57), Expect = 5e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                            
Query: 364      aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 423
                |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 19123198 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 19123139

                                                                         
Query: 424      tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgaggg 480
                | |||||||| |||||||| |||||||||| | |  |||||||||||||||| ||||
Sbjct: 19123138 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaaggg 19123082



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                            
Query: 290      ggctcggcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 349
                |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 19123390 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 19123331

                                 
Query: 350      actttgcgtaggaaagg 366
                ||| ||| |||||||||
Sbjct: 19123330 actctgcataggaaagg 19123314
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                         
Query: 156   ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
             ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076

                                                                         
Query: 216   atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
             |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016

                                
Query: 273   cttatggccccaaggctgg 291
             || ||||||||||||||||
Sbjct: 22015 ctcatggccccaaggctgg 21997



 Score =  113 bits (57), Expect = 5e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                         
Query: 364   aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 423
             |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 21447 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 21388

                                                                      
Query: 424   tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgaggg 480
             | |||||||| |||||||| |||||||||| | |  |||||||||||||||| ||||
Sbjct: 21387 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaaggg 21331



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                         
Query: 290   ggctcggcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 349
             |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 21639 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 21580

                              
Query: 350   actttgcgtaggaaagg 366
             ||| ||| |||||||||
Sbjct: 21579 actctgcataggaaagg 21563
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                          
Query: 156    ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 215
              ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348

                                                                          
Query: 216    atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 272
              |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288

                                 
Query: 273    cttatggccccaaggctgg 291
              || ||||||||||||||||
Sbjct: 129287 ctcatggccccaaggctgg 129269



 Score =  113 bits (57), Expect = 5e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                          
Query: 364    aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 423
              |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 128719 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 128660

                                                                       
Query: 424    tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgaggg 480
              | |||||||| |||||||| |||||||||| | |  |||||||||||||||| ||||
Sbjct: 128659 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaaggg 128603



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 290    ggctcggcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 349
              |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 128911 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 128852

                               
Query: 350    actttgcgtaggaaagg 366
              ||| ||| |||||||||
Sbjct: 128851 actctgcataggaaagg 128835
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>ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G61780 mRNA,
           complete cds
          Length = 3552

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 309 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 368
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct: 444 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 503

                                 
Query: 369 gtcacattcagagtggattaca 390
           ||  | |||| |||||||||||
Sbjct: 504 gttgctttcaaagtggattaca 525
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>ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G07350 mRNA,
           complete cds
          Length = 3397

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 309 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 368
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

                                 
Query: 369 gtcacattcagagtggattaca 390
           ||  |||||| |||||||||||
Sbjct: 390 gttgcattcaaagtggattaca 411
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>gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, complete cds
          Length = 3397

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 309 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 368
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

                                 
Query: 369 gtcacattcagagtggattaca 390
           ||  |||||| |||||||||||
Sbjct: 390 gttgcattcaaagtggattaca 411
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>gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like protein (At5g61780)
           mRNA, complete cds
          Length = 3538

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 309 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 368
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct: 445 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 504

                                 
Query: 369 gtcacattcagagtggattaca 390
           ||  | |||| |||||||||||
Sbjct: 505 gttgctttcaaagtggattaca 526
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>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence
          Length = 3381

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 297 cgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgc 356
           ||||||||||| |||||||||||||| ||| ||||||| || ||  ||||||| ||||||
Sbjct: 327 cgtggtggagtggatgagccatttgcatggcaaagcagagacttcttgaggaagctttgc 386

                                 
Query: 357 gtaggaaaggaggtcacattca 378
            | |||||||||||||| ||||
Sbjct: 387 attggaaaggaggtcactttca 408
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>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9
          Length = 57246

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 309   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 366
             |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||
Sbjct: 27733 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaagg 27790
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>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
           complete cds
          Length = 3379

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 300 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgta 359
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| |||||| | 
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgcatt 425

                                           
Query: 360 ggaaaggaggtcacattcagagtggattacac 391
           |||| |||| | || |||||| | ||||||||
Sbjct: 426 ggaagggagattactttcagaattgattacac 457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 180 aaggtgaaggctgtgacttctggggactgc 209
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds
          Length = 1339

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 300 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgta 359
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| |||||| | 
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgcatt 425

                                           
Query: 360 ggaaaggaggtcacattcagagtggattacac 391
           |||| |||| | || |||||| | ||||||||
Sbjct: 426 ggaagggagattactttcagaattgattacac 457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 180 aaggtgaaggctgtgacttctggggactgc 209
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                     
Query: 300    ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaacttt 354
              ||||| |||||||| |||||||| |||||||| || |||||||||||||| ||||
Sbjct: 103341 ggtggtgtcgatgaaccatttgcatgggaaagtagagagtttctgaggaagcttt 103287
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>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence
          Length = 84869

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 309  gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 366
            |||||||| ||||| |||||||||| ||| ||| |||||||||||||| | |||||||
Sbjct: 8643 gatgagccttttgcatgggaaagcaaggaatttttgaggaaactttgcattggaaagg 8586
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>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project)
          Length = 116763

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 309   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 366
             |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||
Sbjct: 39695 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaagg 39638
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>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a,
             complete sequence
          Length = 65557

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 309   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 366
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 54104 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 54047



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 309   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 366
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 38111 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 38054



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 309   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 366
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 25201 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 25144
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 458     ggttgctgcaggatgggcgaggg 480
               |||||||||||||||||||||||
Sbjct: 3586079 ggttgctgcaggatgggcgaggg 3586057
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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 99    aggcggaggccgctcgccgccg 120
             ||||||||||||||||||||||
Sbjct: 60057 aggcggaggccgctcgccgccg 60036
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>dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-692N5, complete
              sequences
          Length = 186626

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 451    acttggtggttgctgcaggatg 472
              ||||||||||||||||||||||
Sbjct: 131118 acttggtggttgctgcaggatg 131139
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>gb|AC006494.13| Drosophila melanogaster clone BACR48C17, complete sequence
          Length = 164501

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   gtaggaaaggaggtcacattc 377
             |||||||||||||||||||||
Sbjct: 32370 gtaggaaaggaggtcacattc 32350
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>gb|AC008196.8| Drosophila melanogaster clone BACR30J14, complete sequence
          Length = 179562

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   gtaggaaaggaggtcacattc 377
             |||||||||||||||||||||
Sbjct: 85083 gtaggaaaggaggtcacattc 85063
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>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the
             complete sequence
          Length = 224856

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   gtaggaaaggaggtcacattc 377
             |||||||||||||||||||||
Sbjct: 35197 gtaggaaaggaggtcacattc 35177
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     cggcgtggtggagtcgatga 313
               ||||||||||||||||||||
Sbjct: 4059063 cggcgtggtggagtcgatga 4059082
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>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 262323

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   gagtttctgaggaaactttg 355
             ||||||||||||||||||||
Sbjct: 97730 gagtttctgaggaaactttg 97749
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>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence
          Length = 156056

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ccagagaagtccatcactct 265
              ||||||||||||||||||||
Sbjct: 148918 ccagagaagtccatcactct 148937
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     cggcgtggtggagtcgatga 313
               ||||||||||||||||||||
Sbjct: 3791362 cggcgtggtggagtcgatga 3791381
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>gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partial sequence
          Length = 8390

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 316  catttgcttgggaaagcagg 335
            ||||||||||||||||||||
Sbjct: 7409 catttgcttgggaaagcagg 7428
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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ggcggaggccgctcgccgcc 119
             ||||||||||||||||||||
Sbjct: 32744 ggcggaggccgctcgccgcc 32763
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>emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chromosome 1p21.3-22.3
             Contains ESTs, STSs, GSSs and a CpG island. Contains part
             of a novel gene for a protein similar to rat
             transporter-like protein (CTL1) and the CNN3 gene for two
             isoforms of acidic calponin 3, complete sequence
          Length = 106277

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 328   aaagcagggagtttctgaggaaac 351
             |||||||| |||||||||||||||
Sbjct: 27652 aaagcaggcagtttctgaggaaac 27629
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>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 254457

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ccagagaagtccatcactct 265
             ||||||||||||||||||||
Sbjct: 18393 ccagagaagtccatcactct 18374
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     cggcgtggtggagtcgatga 313
               ||||||||||||||||||||
Sbjct: 4485174 cggcgtggtggagtcgatga 4485193
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>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence
          Length = 182165

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   aaagcagggagtttctgaggaaac 351
             |||||||| |||||||||||||||
Sbjct: 56221 aaagcaggcagtttctgaggaaac 56244
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>gb|AC016736.6| Homo sapiens BAC clone RP11-393J17 from 2, complete sequence
          Length = 149884

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    ggtggttgctgcaggatggg 474
              ||||||||||||||||||||
Sbjct: 143949 ggtggttgctgcaggatggg 143930
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>gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, complete sequence
          Length = 80506

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   agtttctgaggaaactttgc 356
             ||||||||||||||||||||
Sbjct: 33555 agtttctgaggaaactttgc 33536
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>emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in linkage group 20,
           complete sequence
          Length = 108164

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 328 aaagcagggagtttctgagg 347
           ||||||||||||||||||||
Sbjct: 303 aaagcagggagtttctgagg 284
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>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   ccagagaagtccatcactct 265
             ||||||||||||||||||||
Sbjct: 66033 ccagagaagtccatcactct 66052
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     cggcgtggtggagtcgatga 313
               ||||||||||||||||||||
Sbjct: 4519318 cggcgtggtggagtcgatga 4519337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,002,450
Number of Sequences: 3902068
Number of extensions: 4002450
Number of successful extensions: 77325
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77006
Number of HSP's gapped (non-prelim): 315
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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