ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa826... 84 5e-13
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
3dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
4dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
5ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothet... 44 0.40
6gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen... 44 0.40
7gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 44 0.40
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.40
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
11gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 1... 42 1.6
12ref|XM_475190.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
13emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in... 42 1.6
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cyt... 42 1.6
17gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF gene... 42 1.6
18dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
20emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section... 42 1.6
21gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
22ref|XM_482765.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
23ref|XM_480321.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
24ref|XM_475598.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
25ref|XM_467596.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
26ref|XM_466302.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
27gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence 40 6.2
28gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, co... 40 6.2
29gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.2
30gb|AC118318.7| Rattus norvegicus 7 BAC CH230-15G17 (Children's H... 40 6.2
31gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 6.2
32gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
33gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.2
34emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clo... 40 6.2
35emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on ch... 40 6.2
36emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on ch... 40 6.2
37ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.2
38ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.2
39emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.2
40emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.2
41gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, comple... 40 6.2
42gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 40 6.2
43gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosom... 40 6.2
44gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.2
45gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, com... 40 6.2
46gb|AC092751.4| Genomic sequence for Mus musculus, clone RP23-113... 40 6.2
47gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.2
48gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-lik... 40 6.2
49dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
50dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
51dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
52dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
53dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
54dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
55dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
56ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA 40 6.2
57dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
58dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
59gb|AY103805.1| Zea mays PCO119314 mRNA sequence 40 6.2
60gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 6.2
61gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 6.2
62gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone M... 40 6.2
63gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 6.2
64gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 6.2
65gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 6.2
66gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome... 40 6.2
67gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.2
68emb|AL773563.12| Mouse DNA sequence from clone RP23-414L19 on ch... 40 6.2
69ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA 40 6.2
70ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y ... 40 6.2
71gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing... 40 6.2
72gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 m... 40 6.2
73gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding re... 40 6.2
74gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5,... 40 6.2 
>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 357 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 402
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 234



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 169 atggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctcc 228
           ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||||
Sbjct: 1   atggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctcc 60

             
Query: 229 cc 230
           ||
Sbjct: 61  cc 62



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 414 cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 458
           ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 255 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 300
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                             
Query: 357     ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 402
               ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7481500 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 7481455



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                           
Query: 168     aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 227
               |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 7481689 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 7481630

                  
Query: 228     ccc 230
               |||
Sbjct: 7481629 ccc 7481627



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                             
Query: 414     cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 458
               ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 7481434 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 7481389
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                           
Query: 357   ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 402
             ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 30292 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 30247



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                         
Query: 168   aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 227
             |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 30481 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 30422

                
Query: 228   ccc 230
             |||
Sbjct: 30421 ccc 30419



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                           
Query: 414   cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 458
             ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 30226 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 30181
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>dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full
           insert sequence
          Length = 1754

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 357 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 402
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 360



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 168 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 227
           |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 126 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 185

              
Query: 228 ccc 230
           |||
Sbjct: 186 ccc 188



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 414 cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 458
           ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 381 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 426
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>ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0015K05.5), mRNA
          Length = 942

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 401 ccgccgacgacgccgacgacggggac 426
           ||||||||||||||||||||| ||||
Sbjct: 37  ccgccgacgacgccgacgacgaggac 12
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>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
             sequence
          Length = 123292

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 401   ccgccgacgacgccgacgacggggac 426
             ||||||||||||||||||||| ||||
Sbjct: 38954 ccgccgacgacgccgacgacgaggac 38929
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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
              sequence
          Length = 151991

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 401    ccgccgacgacgccgacgacggggac 426
              ||||||||||||||||||||| ||||
Sbjct: 122601 ccgccgacgacgccgacgacgaggac 122576
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 401      ccgccgacgacgccgacgacggggac 426
                ||||||||||||||||||||| ||||
Sbjct: 18956087 ccgccgacgacgccgacgacgaggac 18956112
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 393     gcccaagcccgccgacgacgccgacg 418
               ||||||||||||||||| ||||||||
Sbjct: 8157056 gcccaagcccgccgacgccgccgacg 8157081



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 402     cgccgacgacgccgacgacg 421
               ||||||||||||||||||||
Sbjct: 1826445 cgccgacgacgccgacgacg 1826426



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 402     cgccgacgacgccgacgacg 421
               ||||||||||||||||||||
Sbjct: 1826436 cgccgacgacgccgacgacg 1826417
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 401      ccgccgacgacgccgacgacggggac 426
                ||||||||||||||||||||| ||||
Sbjct: 18967317 ccgccgacgacgccgacgacgaggac 18967342
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>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence
          Length = 204554

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     ctccctttctctctccccgtc 50
              |||||||||||||||||||||
Sbjct: 118845 ctccctttctctctccccgtc 118825
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>ref|XM_475190.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 405 cgacgacgccgacgacggggaccacctcccgcc 437
           ||||||||||| ||||||| || ||||||||||
Sbjct: 60  cgacgacgccggcgacgggaacgacctcccgcc 28
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>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24,
             complete sequence
          Length = 158366

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 38    ctctctccccgtccgacccccttcc 62
             ||||| |||||||||||||||||||
Sbjct: 76238 ctctcaccccgtccgacccccttcc 76214
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 405      cgacgacgccgacgacggggaccacctcccgcc 437
                ||||||||||| ||||||| || ||||||||||
Sbjct: 18798470 cgacgacgccggcgacgggaacgacctcccgcc 18798502



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 403     gccgacgacgccgacgacgg 422
               ||||||||||||||||||||
Sbjct: 2422083 gccgacgacgccgacgacgg 2422064
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 400      cccgccgacgacgccgacgac 420
                |||||||||||||||||||||
Sbjct: 15826220 cccgccgacgacgccgacgac 15826200



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 375      cctcctccgccgccgctggc 394
                ||||||||||||||||||||
Sbjct: 30366096 cctcctccgccgccgctggc 30366115



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 400      cccgccgacgacgccgacgacggg 423
                ||||||||||||| ||||||||||
Sbjct: 21582523 cccgccgacgacggcgacgacggg 21582546
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>gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cytochrome P450 reductase
           mRNA, partial cds
          Length = 2333

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 402 cgccgacgacgccgacgacgg 422
           |||||||||||||||||||||
Sbjct: 106 cgccgacgacgccgacgacgg 126
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>gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF genes, qcrABC genes,
            ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene,
            ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and
            ypoC gene, complete cds
          Length = 23775

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 357  ctccgtccatttcaagaacct 377
            |||||||||||||||||||||
Sbjct: 1563 ctccgtccatttcaagaacct 1543
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>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1342_D02
          Length = 125460

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 400   cccgccgacgacgccgacgac 420
             |||||||||||||||||||||
Sbjct: 84160 cccgccgacgacgccgacgac 84140
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>dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G12, full
           insert sequence
          Length = 665

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 400 cccgccgacgacgccgacgac 420
           |||||||||||||||||||||
Sbjct: 233 cccgccgacgacgccgacgac 253
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>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to
              2409180
          Length = 201375

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 357    ctccgtccatttcaagaacct 377
              |||||||||||||||||||||
Sbjct: 157794 ctccgtccatttcaagaacct 157814
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>gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_G07,
             complete sequence
          Length = 71145

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 405   cgacgacgccgacgacggggaccacctcccgcc 437
             ||||||||||| ||||||| || ||||||||||
Sbjct: 20836 cgacgacgccggcgacgggaacgacctcccgcc 20868
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>ref|XM_482765.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cgccgacgacgccgacgacg 421
           ||||||||||||||||||||
Sbjct: 312 cgccgacgacgccgacgacg 293
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>ref|XM_480321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 ccgccgacgacgccgacgacgggg 424
           |||||||||||||||||| |||||
Sbjct: 341 ccgccgacgacgccgacgccgggg 364
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>ref|XM_475598.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 231

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 gccgacgacgccgacgacgg 422
           ||||||||||||||||||||
Sbjct: 48  gccgacgacgccgacgacgg 67
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>ref|XM_467596.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cctcctccgccgccgctggc 394
           ||||||||||||||||||||
Sbjct: 191 cctcctccgccgccgctggc 172
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>ref|XM_466302.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 750

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 400 cccgccgacgacgccgacgacggg 423
           ||||||||||||| ||||||||||
Sbjct: 135 cccgccgacgacggcgacgacggg 112
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>gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence
          Length = 1011

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 ggaggtgccgccggagatgc 190
           ||||||||||||||||||||
Sbjct: 239 ggaggtgccgccggagatgc 258
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>gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 aggtgccgccggagatgctc 192
           ||||||||||||||||||||
Sbjct: 83  aggtgccgccggagatgctc 102
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 402     cgccgacgacgccgacgacg 421
               ||||||||||||||||||||
Sbjct: 1769437 cgccgacgacgccgacgacg 1769456
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>gb|AC118318.7| Rattus norvegicus 7 BAC CH230-15G17 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 128601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cactccctttctctctcccc 47
             ||||||||||||||||||||
Sbjct: 14384 cactccctttctctctcccc 14403
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    cgccgacgacgccgacgacg 421
              ||||||||||||||||||||
Sbjct: 482585 cgccgacgacgccgacgacg 482566
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>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04,
             complete sequence
          Length = 133271

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   gccgacgacgccgacgacgg 422
             ||||||||||||||||||||
Sbjct: 97683 gccgacgacgccgacgacgg 97664
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 402     cgccgacgacgccgacgacg 421
               ||||||||||||||||||||
Sbjct: 3014919 cgccgacgacgccgacgacg 3014938
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>emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clone EATC1F07B
          Length = 317

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cgccgacgacgccgacgacg 421
           ||||||||||||||||||||
Sbjct: 193 cgccgacgacgccgacgacg 174
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>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains
            the DXYS155E gene for DNA segment on chromosome X and Y
            (unique) 155 expressed sequence (XE7, XE7Y), the ASMT
            gene for acetylserotonin O-methyltransferase (ASMTY,
            HIOMT, HIOMTY), three novel genes and three CpG islands,
            complete sequence
          Length = 189825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 381  ccgccgccgctggcccaagc 400
            ||||||||||||||||||||
Sbjct: 9198 ccgccgccgctggcccaagc 9179
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>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the
              CUL4A gene for cullin 4A, the LAMP1 gene for
              lysosomal-associated membrane protein 1, the GRTP1 gene for
              growth hormone regulated TBC protein 1, a novel gene, the
              5' end of a novel gene (FLJ11305) an LDHB (lactate
              dehydrogenase B) pseudogene and six CpG islands, complete
              sequence
          Length = 188896

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     acccccttcccctcttctcc 72
              ||||||||||||||||||||
Sbjct: 163051 acccccttcccctcttctcc 163070
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>ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus similar to
            sporulation-induced transcript 4-associated protein
            (LOC575241), mRNA
          Length = 4368

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  cgccgacgacgccgacgacg 421
            ||||||||||||||||||||
Sbjct: 3840 cgccgacgacgccgacgacg 3859



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  cgccgacgacgccgacgacg 421
            ||||||||||||||||||||
Sbjct: 3831 cgccgacgacgccgacgacg 3850
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>ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14853-PB,
            isoform B (LOC575371), partial mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  cgccgacgacgccgacgacg 421
            ||||||||||||||||||||
Sbjct: 1692 cgccgacgacgccgacgacg 1711
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    acgacgccgacgacggggac 426
              ||||||||||||||||||||
Sbjct: 565961 acgacgccgacgacggggac 565980
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 402     cgccgacgacgccgacgacg 421
               ||||||||||||||||||||
Sbjct: 2744891 cgccgacgacgccgacgacg 2744910
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>gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 171 ggaggtgccgccggagatgctcga 194
           ||||||| ||||||||||||||||
Sbjct: 75  ggaggtgacgccggagatgctcga 98
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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 398    agcccgccgacgacgccgacgacgggga 425
              |||||| |||||||| ||||||||||||
Sbjct: 151219 agcccgacgacgacgacgacgacgggga 151246



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 398    agcccgccgacgacgccgacgacgggga 425
              |||||| |||||||| ||||||||||||
Sbjct: 131205 agcccgacgacgacgacgacgacgggga 131178
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>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete sequence
          Length = 201039

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cccttcccctcttctccacg 75
             ||||||||||||||||||||
Sbjct: 98543 cccttcccctcttctccacg 98562
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 433     ccgcccacgactgcgtcatc 452
               ||||||||||||||||||||
Sbjct: 2665712 ccgcccacgactgcgtcatc 2665731
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>gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, complete sequence
          Length = 182789

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cactccctttctctctcccc 47
              ||||||||||||||||||||
Sbjct: 145867 cactccctttctctctcccc 145848
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>gb|AC092751.4| Genomic sequence for Mus musculus, clone RP23-113P18, complete sequence
          Length = 209990

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cactccctttctctctcccc 47
             ||||||||||||||||||||
Sbjct: 56888 cactccctttctctctcccc 56907
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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
             complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   cgccgacgacgccgacgacg 421
             ||||||||||||||||||||
Sbjct: 38573 cgccgacgacgccgacgacg 38592
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>gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-like protein CO7
           (CO7) mRNA, partial cds
          Length = 1056

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 395 ccaagcccgccgacgacgccgacg 418
           |||||| |||||||||||||||||
Sbjct: 627 ccaagcgcgccgacgacgccgacg 650
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 402      cgccgacgacgccgacgacg 421
                ||||||||||||||||||||
Sbjct: 22411066 cgccgacgacgccgacgacg 22411085



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 401     ccgccgacgacgccgacgacgggg 424
               |||||||||||||||||| |||||
Sbjct: 4311861 ccgccgacgacgccgacgccgggg 4311838
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>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 400   cccgccgacgacgccgacgacggg 423
             ||||||||||||| ||||||||||
Sbjct: 71473 cccgccgacgacggcgacgacggg 71496
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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0054L03
          Length = 183623

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   ccgccgacgacgccgacgacgggg 424
             |||||||||||||||||| |||||
Sbjct: 74655 ccgccgacgacgccgacgccgggg 74632
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>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   cctcctccgccgccgctggc 394
             ||||||||||||||||||||
Sbjct: 46956 cctcctccgccgccgctggc 46975
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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    cgccgacgacgccgacgacg 421
              ||||||||||||||||||||
Sbjct: 108049 cgccgacgacgccgacgacg 108068
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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0493A04
          Length = 149367

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  cgccgacgacgccgacgacg 421
            ||||||||||||||||||||
Sbjct: 5994 cgccgacgacgccgacgacg 6013
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>dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E08, full
           insert sequence
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cgccgacgacgccgacgacg 421
           ||||||||||||||||||||
Sbjct: 312 cgccgacgacgccgacgacg 293
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>ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cgccgacgacgccgacgacg 421
           ||||||||||||||||||||
Sbjct: 955 cgccgacgacgccgacgacg 936
to top
>dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142A16, full
           insert sequence
          Length = 750

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 400 cccgccgacgacgccgacgacggg 423
           ||||||||||||| ||||||||||
Sbjct: 135 cccgccgacgacggcgacgacggg 112
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>dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H08, full
           insert sequence
          Length = 449

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 gccgacgacgccgacgacgg 422
           ||||||||||||||||||||
Sbjct: 158 gccgacgacgccgacgacgg 177
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>gb|AY103805.1| Zea mays PCO119314 mRNA sequence
          Length = 1791

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 acccccttcccctcttctcc 72
          ||||||||||||||||||||
Sbjct: 39 acccccttcccctcttctcc 58
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>gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:125365 IMAGE:40007662), complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 144 ccgccgccgctggcccaagc 125
to top
>gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:125366 IMAGE:40007663), complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 144 ccgccgccgctggcccaagc 125
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>gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone MGC:112764
           IMAGE:7389584), complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  acctcgccgctccaccccct 116
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
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>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete
             sequence
          Length = 188880

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   aacctcctccgccgccgctg 392
             ||||||||||||||||||||
Sbjct: 78410 aacctcctccgccgccgctg 78429
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>gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:39904 IMAGE:5217247), complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 114 ccgccgccgctggcccaagc 95
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>gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           IMAGE:4430810), containing frame-shift errors
          Length = 1073

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 146 ccgccgccgctggcccaagc 127
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>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     cccttcccctcttctccacg 75
              ||||||||||||||||||||
Sbjct: 196548 cccttcccctcttctccacg 196567
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 402     cgccgacgacgccgacgacg 421
               ||||||||||||||||||||
Sbjct: 3895743 cgccgacgacgccgacgacg 3895724
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>emb|AL773563.12| Mouse DNA sequence from clone RP23-414L19 on chromosome 2, complete
             sequence
          Length = 184665

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cactccctttctctctcccc 47
             ||||||||||||||||||||
Sbjct: 11925 cactccctttctctctcccc 11944
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>ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA
          Length = 1272

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  acctcgccgctccaccccct 116
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
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>ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1 (DXYS155E), mRNA
          Length = 3227

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 146 ccgccgccgctggcccaagc 127
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>gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing frame-shift
           errors
          Length = 3127

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 58  ccgccgccgctggcccaagc 39
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>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete sequence
          Length = 202175

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cccttcccctcttctccacg 75
             ||||||||||||||||||||
Sbjct: 98783 cccttcccctcttctccacg 98802
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>gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding regions
          Length = 3233

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 116 ccgccgccgctggcccaagc 97
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>gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5, complete cds
          Length = 2622

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccgccgctggcccaagc 400
           ||||||||||||||||||||
Sbjct: 119 ccgccgccgctggcccaagc 100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,888,270
Number of Sequences: 3902068
Number of extensions: 2888270
Number of successful extensions: 80888
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79030
Number of HSP's gapped (non-prelim): 1858
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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