ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28h09 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 81.3 bits (199), Expect = 1e-15 Identities = 38/68 (55%), Positives = 51/68 (75%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKL 450 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F +EATE F A T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRL 76 Query: 451 FQSKDAGL 474 FQS D L Sbjct: 77 FQSNDQTL 84
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 80.9 bits (198), Expect = 2e-15 Identities = 38/68 (55%), Positives = 50/68 (73%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKL 450 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F EATE F A T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRL 76 Query: 451 FQSKDAGL 474 FQS D L Sbjct: 77 FQSNDQTL 84
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 78.6 bits (192), Expect = 8e-15 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKL 450 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE F A TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 451 FQSKDAGL 474 FQS D L Sbjct: 77 FQSNDPTL 84
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 78.6 bits (192), Expect = 8e-15 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKL 450 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE F A TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 451 FQSKDAGL 474 FQS D L Sbjct: 77 FQSNDPTL 84
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 72.0 bits (175), Expect = 7e-13 Identities = 30/63 (47%), Positives = 48/63 (76%) Frame = +1 Query: 286 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKLFQSKD 465 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ QG++ + EATE F TKL+QSKD Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRTEATEAFFGVTKLWQSKD 77 Query: 466 AGL 474 L Sbjct: 78 VSL 80
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 52.8 bits (125), Expect = 5e-07 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKL 450 S F + + V Q+AR F+ + R+ ++++K+ YL+ G+ F + +ATE+F TKL Sbjct: 13 SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATELFFGITKL 72 Query: 451 FQSKDAGL 474 FQ KD L Sbjct: 73 FQHKDPSL 80
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Frame = +1 Query: 289 EKGAVLQEA-RVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFSATTKLFQSKD 465 +K + Q+ F++ ++++RC +I++LL LL QG+TF + EAT +F + +KLFQ ++ Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQN 78
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 80 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 166 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 80 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 166 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 354 ASPRIKLRVVEDAGLLQDGTLLDAEERR 271 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 354 ASPRIKLRVVEDAGLLQDGTLLDAEERR 271 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)| (YANK3) Length = 486 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 104 KDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 214 K S++L R P P P SR + P R A P GP Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,031,655 Number of Sequences: 219361 Number of extensions: 814875 Number of successful extensions: 2894 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2879 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
