ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28h08 |
|---|---|
| Clone Library Name | barley_pub |
>RNF41_XENLA (Q5FWL3) RING finger protein 41| Length = 317 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQACPYDGYLVTEADSKPLVDSI 463 + CP+C ++ E +QA C H +C C+ + Q CP D +VT A +P+ + Sbjct: 15 DLICPICSGVL--EEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIM 72 Query: 464 NHLL 475 ++L Sbjct: 73 RNML 76
>RNF41_MOUSE (Q8BH75) RING finger protein 41| Length = 317 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQACPYDGYLVTEADSKPLVDSI 463 + CP+C ++ E +QA C H +C C+ + Q CP D +VT A +P+ + Sbjct: 15 DLICPICSGVL--EEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIM 72 Query: 464 NHLL 475 ++L Sbjct: 73 RNML 76
>RNF41_HUMAN (Q9H4P4) RING finger protein 41| Length = 317 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQACPYDGYLVTEADSKPLVDSI 463 + CP+C ++ E +QA C H +C C+ + Q CP D +VT A +P+ + Sbjct: 15 DLICPICSGVL--EEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIM 72 Query: 464 NHLL 475 ++L Sbjct: 73 RNML 76
>RNF41_BRARE (Q7ZW16) RING finger protein 41| Length = 318 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQACPYDGYLVTEADSKPLVDSI 463 + CP+C ++ E ++A C H +C C+ A Q CP D +VT A +P+ + Sbjct: 15 DLLCPICSGVL--EEPVRAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIM 72 Query: 464 NHLL 475 ++L Sbjct: 73 RNML 76
>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (mCOP1) Length = 733 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Frame = +2 Query: 164 AGVAGRRFSLPASE---PLLDRS**GRTMGFDNECILNIQTLPGEYFCPVCRTLIYPNEA 334 AGV G SL +S PLL + N + + + ++ CP+C +I EA Sbjct: 99 AGVGGSSSSLGSSSRKRPLL--------VPLCNGLLNSYEDKSNDFVCPICFDMI--EEA 148 Query: 335 LQAQCTHLYCKPCLAYVAATTQACPYDGYLVTEAD 439 +C H +C C+ CP Y+V D Sbjct: 149 YMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNID 183
>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6| Length = 530 Score = 37.7 bits (86), Expect = 0.015 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = +2 Query: 158 CWAGVAGRRFSLPASEPLLDRS**GRTMGFDNECILNIQTLPGEYFCPVCRTLIYPNEAL 337 C A V S AS L S G+D E L +Y CP+C L+ EA+ Sbjct: 27 CSAAVKDDSVSGSASTGNLSSSFMEEIQGYDVEFD---PPLESKYECPIC--LMALREAV 81 Query: 338 QAQCTHLYCKPC-LAYVAATTQACPYDGYLVTE 433 Q C H +CK C + + CP D ++ E Sbjct: 82 QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 114
>TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleukin 1 signal| transducer) (RING finger protein 85) Length = 522 Score = 37.4 bits (85), Expect = 0.020 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +2 Query: 278 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPC-LAYVAATTQACPYDGYLVTE 433 L +Y CP+C L+ EA+Q C H +CK C + + CP D ++ E Sbjct: 64 LESKYECPIC--LMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 114
>TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor necrosis factor| type 2 receptor-associated protein 3) Length = 501 Score = 37.0 bits (84), Expect = 0.026 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +2 Query: 278 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAAT----TQACPYDG 418 L +Y C CR ++ QAQC H YC CLA + ++ AC ++G Sbjct: 28 LEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76
>UB7I3_MOUSE (Q9WUB0) Ubiquitin-conjugating enzyme 7-interacting protein 3| (UbcM4-interacting protein 28) Length = 498 Score = 37.0 bits (84), Expect = 0.026 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEA-LQAQCTHLYCKPCLAYVAATTQ----ACPY 412 L + T P E CPVC +++ P EA + +C H +C+ CL +Q ACP+ Sbjct: 261 LVLNTEPTE--CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVACPF 313
>TRAF2_MOUSE (P39429) TNF receptor-associated factor 2| Length = 501 Score = 36.6 bits (83), Expect = 0.034 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = +2 Query: 278 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAAT----TQACPYDG 418 L +Y C C+ ++ QAQC H YC CL + ++ AC Y+G Sbjct: 28 LEAKYLCSACKNIL--RRPFQAQCGHRYCSFCLTSILSSGPQNCAACVYEG 76
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 36.6 bits (83), Expect = 0.034 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = +2 Query: 251 NECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVT 430 N I + + ++ CP+C +I EA +C H +C C+ CP Y+V Sbjct: 121 NGLINSYEDKSNDFVCPICFDMI--EEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVD 178 Query: 431 EAD 439 D Sbjct: 179 NID 181
>UB7I3_RAT (Q62921) Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC| protein interacting with PKC) (Protein kinase C-binding protein beta-15) Length = 498 Score = 36.6 bits (83), Expect = 0.034 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEA-LQAQCTHLYCKPCLAYVAATTQ----ACPY 412 L + T P E CPVC +++ P EA + +C H +C+ CL +Q +CP+ Sbjct: 261 LVLNTEPAE--CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPF 313
>UB7I3_HUMAN (Q9BYM8) Ubiquitin-conjugating enzyme 7-interacting protein 3| (Hepatitis B virus X-associated protein 4) (HBV-associated factor 4) (RING finger protein 54) Length = 500 Score = 36.6 bits (83), Expect = 0.034 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEA-LQAQCTHLYCKPCLAYVAATTQ----ACPY 412 L + T P E CPVC +++ P EA + +C H +C+ CL +Q +CP+ Sbjct: 263 LVLNTEPAE--CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPF 315
>TRI74_HUMAN (Q86UV6) Tripartite motif protein 74 (Tripartite motif protein 50C)| Length = 250 Score = 36.6 bits (83), Expect = 0.034 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPC---LAYVAATTQACPYDGYLVTEADSKPLV 454 CP+C + E+L QC H YCK C L+Y T CP +V + S P V Sbjct: 16 CPICLEVF--KESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSSLPNV 69
>TRI73_HUMAN (Q86UV7) Tripartite motif protein 73 (Tripartite motif protein 50B)| Length = 250 Score = 36.6 bits (83), Expect = 0.034 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPC---LAYVAATTQACPYDGYLVTEADSKPLV 454 CP+C + E+L QC H YCK C L+Y T CP +V + S P V Sbjct: 16 CPICLEVF--KESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSSLPNV 69
>YEU6_YEAST (P40072) Hypothetical 30.8 kDa protein in SPR6-RPL23B intergenic| region Length = 274 Score = 36.2 bits (82), Expect = 0.045 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGY 421 +Y CP+C P AL C H++C PCL + +++ C G+ Sbjct: 203 DYRCPIC--FEPPETALMTLCGHVFCCPCLFQMVNSSRTCRQFGH 245
>HELC1_HUMAN (Q8N3C0) Activating signal cointegrator 1 complex subunit 3 (EC| 3.6.1.-) (ASC-1 complex subunit p200) (Trip4 complex subunit p200) (Helicase, ATP binding 1) Length = 2202 Score = 34.7 bits (78), Expect = 0.13 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ----ACPYDGYLVT 430 ++IQ PG+++CP ++ P A QA +H KP L +V++ Q A +L T Sbjct: 1524 VHIQGFPGQHYCPRMASMNKP--AFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLAT 1581 Query: 431 EADSK 445 E D K Sbjct: 1582 EEDPK 1586
>TRI50_HUMAN (Q86XT4) Tripartite motif protein 50| Length = 487 Score = 34.3 bits (77), Expect = 0.17 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQA---CPYDGYLVTEADSKPLV 454 CP+C + E L QC H YCK CL ++ A CP V + S P V Sbjct: 16 CPICLEVF--KEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLPNV 69
>DG17_DICDI (P11467) Protein DG17| Length = 458 Score = 34.3 bits (77), Expect = 0.17 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = +2 Query: 251 NECILNIQTLP--GEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 406 N+ + N ++L +Y CP+C IY + Q + H CK C T + C Sbjct: 10 NDILFNQESLQKKNKYTCPICFEFIYKKQIYQCKSGHHACKECWEKSLETKKEC 63
>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 672 Score = 34.3 bits (77), Expect = 0.17 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 278 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVTEADSKP 448 L ++ CP+C +I +A C H +C C+ CP G+ +T ++ P Sbjct: 41 LDKDFLCPICMQII--KDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFP 95
>TRI50_MOUSE (Q810I2) Tripartite motif protein 50| Length = 483 Score = 33.9 bits (76), Expect = 0.22 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 L + L + CP+C + E L QC H YCK CL Sbjct: 5 LTVPELQDQLQCPICLEVF--KEPLMLQCGHSYCKDCL 40
>RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1073 Score = 33.9 bits (76), Expect = 0.22 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLA-YVAATTQACP 409 C VC L+ +E +Q+ C HL+C+ C+A Y+ + CP Sbjct: 310 CQVCDHLL--SEPVQSPCRHLFCRSCIAKYIYSLGPHCP 346
>RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 378 Score = 33.5 bits (75), Expect = 0.29 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVTEADSK--PLVDSI 463 C +C+ L+ N ++ QC H YC C+ CP V E+ K PL++ I Sbjct: 29 CYICKDLL--NAPVRTQCDHTYCSQCIREFLLRDNRCPLCKTEVFESGLKRDPLLEEI 84
>TRI50_PIG (Q865W2) Tripartite motif protein 50| Length = 486 Score = 33.5 bits (75), Expect = 0.29 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQA---CPYDGYLVTE 433 +++ L CPVC + E L QC H YCK CL ++ + CP V Sbjct: 5 VSVPELEDRLQCPVCLEVF--KEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEVDS 62 Query: 434 ADSKPLV 454 + S P V Sbjct: 63 SSSPPNV 69
>A33_PLEWA (Q02084) Zinc-binding protein A33| Length = 624 Score = 33.5 bits (75), Expect = 0.29 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL--AYVAATTQACPYDGYLVTE 433 CP+CR+L E + +C H +CK C+ ++ +A+ +CP ++TE Sbjct: 162 CPLCRSLF--KEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTE 207
>TRI50_RAT (Q810I1) Tripartite motif protein 50| Length = 483 Score = 33.5 bits (75), Expect = 0.29 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 L + L + CP+C + E L QC H YCK CL Sbjct: 5 LTVPELQDQLQCPICLEVF--KEPLMLQCGHSYCKNCL 40
>PEX12_HUMAN (O00623) Peroxisome assembly protein 12 (Peroxin-12) (Peroxisome| assembly factor 3) (PAF-3) Length = 359 Score = 33.1 bits (74), Expect = 0.38 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGY 421 CP+CR N+ + A +++C C+ + + QACP GY Sbjct: 304 CPLCRKTRV-NDTVLATSGYVFCYRCVFHYVRSHQACPITGY 344
>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 828 Score = 33.1 bits (74), Expect = 0.38 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ-ACP 409 CP C+T P + + +C HL+C+ C+ + T Q CP Sbjct: 776 CPSCKTR--PKDCIMLKCYHLFCETCIKTMYDTRQRKCP 812
>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 837 Score = 33.1 bits (74), Expect = 0.38 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ-ACP 409 CP C+T P + + +C HL+C+ C+ + T Q CP Sbjct: 785 CPSCKTR--PKDCIMLKCYHLFCETCIKTMYDTRQRKCP 821
>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1114 Score = 32.7 bits (73), Expect = 0.50 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Frame = +2 Query: 296 CPVCRT-LIYPNEALQ-AQCTHLYCKPCLAYVAATTQ------ACPYDGYLVTEADSKPL 451 C +C T I P A+ +C H +C+PCLA Q CPY ++EA+ L Sbjct: 858 CAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKL 917 Query: 452 VDSIN 466 + I+ Sbjct: 918 KEPID 922
>DPO3_STAAS (Q6G9U9) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1438 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 899 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 958 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 959 KGDKVPDID 967
>DPO3_STAAR (Q6GHH1) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1438 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 899 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 958 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 959 KGDKVPDID 967
>DPO3_STAAN (P63982) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1438 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 899 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 958 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 959 KGDKVPDID 967
>DPO3_STAAM (P63981) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1438 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 899 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 958 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 959 KGDKVPDID 967
>DPO3_STAAC (Q5HGG7) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1438 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 899 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 958 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 959 KGDKVPDID 967
>DPO3_STAAW (P68852) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1436 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 897 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 956 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 957 KGDKVPDID 965
>DPO3_STAAU (P68851) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1436 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 260 ILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHL---YCKPCLAYVAATTQACPYDGYLVT 430 I + LP Y CP C+T + N+ L C+ C A + Q P++ +L Sbjct: 897 ITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGF 956 Query: 431 EADSKPLVD 457 + D P +D Sbjct: 957 KGDKVPDID 965
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 32.3 bits (72), Expect = 0.65 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + QC H++CK C+ Sbjct: 24 CPICLELI--KEPVSTQCDHIFCKFCM 48
>TRI49_HUMAN (Q9NS80) Tripartite motif protein 49 (RING finger protein 18)| (Testis-specific ring-finger protein) Length = 452 Score = 32.0 bits (71), Expect = 0.85 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 269 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPC 373 +Q GE CP+C Y + + C H +C+PC Sbjct: 6 LQVFQGELICPLCMN--YFIDPVTIDCGHSFCRPC 38
>DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)| Length = 347 Score = 32.0 bits (71), Expect = 0.85 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDG 418 E CP+C I + L+ +C H +C+ C+ +ACP G Sbjct: 161 ETTCPICLGEIQNAKTLE-KCRHSFCEGCITRALQVKKACPMCG 203
>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)| Length = 347 Score = 32.0 bits (71), Expect = 0.85 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDG 418 E CP+C I + L+ +C H +C+ C+ +ACP G Sbjct: 161 ESTCPICLGEIQNAKTLE-KCRHSFCEGCITRALQVKKACPMCG 203
>TRI40_HUMAN (Q6P9F5) Tripartite motif 40 protein (RING finger protein 35)| Length = 258 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 E CP+C+ + EA+ C HL+C+ CL Sbjct: 11 EGVCPICQESL--KEAVSTNCGHLFCRVCL 38
>TRI40_PANTR (Q1XHT8) Tripartite motif 40 protein| Length = 229 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 E CP+C+ + EA+ C HL+C+ CL Sbjct: 11 EGVCPICQESL--KEAVSTNCGHLFCRVCL 38
>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of| interleukin 2 receptor) Length = 496 Score = 31.6 bits (70), Expect = 1.1 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +2 Query: 269 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 ++ + E CP+C L+ E + A C H +C+ C+ Sbjct: 6 LEMIKEEVTCPICLELL--KEPVSADCNHSFCRACI 39
>PEX12_RAT (O88177) Peroxisome assembly protein 12 (Peroxin-12) (Peroxisome| assembly factor 3) (PAF-3) Length = 359 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGY 421 CP+CR N+ + A +++C C+ + QACP GY Sbjct: 304 CPLCRKARV-NDTVLATSGYVFCYRCVFNYVRSHQACPITGY 344
>PEX12_MOUSE (Q8VC48) Peroxisome assembly protein 12 (Peroxin-12)| Length = 359 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGY 421 CP+CR N+ + A +++C C+ + QACP GY Sbjct: 304 CPLCRKTRV-NDTVLATSGYVFCYRCVFNYVRSHQACPITGY 344
>PEX12_CRILO (Q9ET67) Peroxisome assembly protein 12 (Peroxin-12)| Length = 359 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGY 421 CP+CR N+ + A +++C C+ + QACP GY Sbjct: 304 CPLCRKTRV-NDTVLATSGYVFCYRCVFNYVRSHQACPITGY 344
>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein| 0) (EP0) Length = 410 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVT 430 CP+C + EA C H +C C+ T+ ACP VT Sbjct: 46 CPICLD-VAATEAQTLPCMHKFCLDCIQRWTLTSTACPLCNARVT 89
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC-PYDGYLVTEA 436 C +C Y N L CT C PC T+AC P+ G+ + +A Sbjct: 2003 CEICAPGFYGNALLPGNCTRCDCTPC------GTEACDPHSGHCLCKA 2044
>TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 481 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = +2 Query: 266 NIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVTEADSK 445 ++ +L E CP+C+ + E + C H +C+ CL T+ C G + E+ + Sbjct: 6 SVTSLADEVNCPICQGTL--REPVTIDCGHNFCRACL------TRYCEIPGPDLEESPTC 57 Query: 446 PL 451 PL Sbjct: 58 PL 59
>TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 481 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = +2 Query: 266 NIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVTEADSK 445 ++ +L E CP+C+ + E + C H +C+ CL T+ C G + E+ + Sbjct: 6 SVTSLADEVNCPICQGTL--REPVTIDCGHNFCRACL------TRYCEIPGPDLEESPTC 57 Query: 446 PL 451 PL Sbjct: 58 PL 59
>PCGF6_HUMAN (Q9BYE7) Polycomb group RING finger protein 6 (RING finger protein| 134) (Mel18 and Bmi1-like RING finger) Length = 352 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/54 (22%), Positives = 24/54 (44%) Frame = +2 Query: 248 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACP 409 + E ++N+ L C +C+ + + +C H +CK C+ + CP Sbjct: 120 EEERLINLSELTPYILCSICKGYLIDATTI-TECLHTFCKSCIVRHFYYSNRCP 172
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>RX2_ORYLA (Q9I9A2) Retinal homeobox protein Rx2| Length = 327 Score = 30.8 bits (68), Expect = 1.9 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -1 Query: 455 PPEAWNQLPSL---SNHHKGRLVWLLLHKPSRVCSRDVCTELAELRWGI*VSDKQGKNIH 285 P E + LP L S HH + S + S D C E++ L + ++D K+I Sbjct: 77 PSEPYGNLPELGDSSQHHS--------YHDSSLFSSDKCEEMSNLTKEVDIADGSPKSIK 128 Query: 284 QEEFVYSEYIHYRNPLSGLTNFYPVRVLMPAERIASRPHQP 162 +EE + + H RN + T Y + L ER + H P Sbjct: 129 EEE--HGKKKHRRNRTTFTT--YQLHEL---ERAFEKSHYP 162
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>TRAF5_MOUSE (P70191) TNF receptor-associated factor 5| Length = 558 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 245 FDNECILNIQTLPGEYFCPVCRTLIYPNEALQAQC-------THLYCK 367 F +CI +++ L CPV + +I P E + C H+YCK Sbjct: 64 FCQQCIRSLRELNSVPICPVDKEVIKPQEVFKDNCCKREVLNLHVYCK 111
>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog| Length = 1878 Score = 30.8 bits (68), Expect = 1.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++CK C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCKFCM 48
>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 1 (EC 3.6.1.-) (SMARCA3-like protein 1) Length = 881 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPC-LAYVAATTQACPYDGYLVTEAD 439 ++ CP+C + P + +C H++C+ C L + + CP +T++D Sbjct: 632 DFDCPIC--ISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSD 681
>SINA1_ARATH (P93748) Putative ubiquitin ligase SINAT1 (EC 6.3.2.-) (Seven in| absentia homolog 1) Length = 305 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYD 415 CPVC L+YP Q H C C V T C Y+ Sbjct: 57 CPVCTNLMYP-PIHQCPNGHTLCSSCKLRVQNTCPTCRYE 95
>SINA2_ARATH (Q9M2P4) Ubiquitin ligase SINAT2 (EC 6.3.2.-) (Seven in absentia| homolog 2) Length = 308 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYD 415 CPVC L+YP Q H C C V T C Y+ Sbjct: 60 CPVCTNLMYP-PIHQCPNGHTLCSNCKLRVQNTCPTCRYE 98
>MNAB_MOUSE (P0C090) Membrane-associated nucleic acid binding protein| Length = 1187 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 296 CPVCRTLIYPN--EALQAQCTHLYCKPCLAYVAATTQACPYDGYLV-TEADSKPL 451 CP+C N + + C+H CK CL + +ACP+D + T+ D P+ Sbjct: 14 CPICYNEFDENVHKPISLGCSHTVCKTCLNKL--HRKACPFDQTAINTDIDVLPV 66
>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting| protein) (RING finger protein 90) Length = 511 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Frame = +2 Query: 242 GFDNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL---------AYVAAT 394 G E + L GE C +C L E + +C H +C+ C+ V A Sbjct: 11 GTGAEALALAAELQGEATCSICLELF--REPVSVECGHSFCRACIGRCWERPGAGSVGAA 68 Query: 395 TQACPY 412 T+A P+ Sbjct: 69 TRAPPF 74
>TRI27_HUMAN (P14373) Zinc-finger protein RFP (Ret finger protein) (Tripartite| motif protein 27) (RING finger protein 76) Length = 513 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Frame = +2 Query: 272 QTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAY---VAATTQACP 409 + L E CPVC L Y E + C H C CLA A T +CP Sbjct: 8 ECLQQETTCPVC--LQYFAEPMMLDCGHNICCACLARCWGTAETNVSCP 54
>TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger protein 35)| Length = 247 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C + EA+ C HL+C+ CL Sbjct: 12 CPICLDPL--KEAVSTDCRHLFCRMCL 36
>PCGF6_RAT (Q5XI70) Polycomb group RING finger protein 6 (RING finger protein| 134) Length = 351 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/54 (22%), Positives = 24/54 (44%) Frame = +2 Query: 248 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACP 409 + E ++N+ L C +C+ + + +C H +CK C+ + CP Sbjct: 119 EEERLINLVELTPYILCSICKGYLIDATTI-TECLHTFCKSCIVRHFYYSNRCP 171
>RAG1_BRARE (O13033) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1057 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPC-LAYVAATTQACP 409 C VC L+ ++ +Q+ C HL+C+ C + Y A CP Sbjct: 296 CQVCDHLL--SDPVQSPCRHLFCRLCIIRYTHALGPNCP 332
>PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING finger protein| 134) (Mel18 and Bmi1-like RING finger) Length = 353 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/54 (22%), Positives = 24/54 (44%) Frame = +2 Query: 248 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACP 409 + E ++N+ L C +C+ + + +C H +CK C+ + CP Sbjct: 121 EEERLINLVELTPYILCSICKGYLIDATTI-TECLHTFCKSCIVRHFYYSNRCP 173
>MNAB_HUMAN (Q9HBD1) Membrane-associated nucleic acid-binding protein (RING| finger protein 164) Length = 1191 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 296 CPVCRTLIYPN--EALQAQCTHLYCKPCLAYVAATTQACPYDGYLV-TEADSKPL 451 CP+C N + + C+H CK CL + +ACP+D + T+ D P+ Sbjct: 14 CPICYNEFDENVHKPISLGCSHTVCKTCLNKL--HRKACPFDQTAINTDIDVLPV 66
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 29.6 bits (65), Expect = 4.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCL 376 CP+C LI E + +C H++C+ C+ Sbjct: 24 CPICLELI--KEPVSTKCDHIFCRFCM 48
>ZN313_BOVIN (Q4U5R4) Zinc finger protein 313| Length = 230 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 284 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 G + CPVC + + +Q C H++C CL Sbjct: 27 GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 55
>RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)| Length = 231 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ-ACPY-DGYLVTE 433 C VC +++ + ++ +C H++C+ C+A + CPY YL +E Sbjct: 36 CAVCLEVLH--QPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSE 81
>RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cell RING| activation protein 1) (TRAC-1) Length = 231 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ-ACPY-DGYLVTE 433 C VC +++ + ++ +C H++C+ C+A + CPY YL +E Sbjct: 36 CAVCLEVLH--QPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSE 81
>RAD18_HUMAN (Q9NS91) Postreplication repair protein RAD18 (hRAD18) (hHR18)| (RING finger protein 73) Length = 495 Score = 29.6 bits (65), Expect = 4.2 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Frame = +2 Query: 344 QCTHLYCKPCLAYVAATTQACPYDGYLVTEADSK------PLVDSI----NHLL 475 QC+H YC C+ + CP VTE D K LV S+ NHLL Sbjct: 40 QCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLL 93
>TRAF3_MOUSE (Q60803) TNF receptor-associated factor 3 (CD40 receptor-associated| factor 1) (CRAF1) (TRAFAMN) Length = 567 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/43 (25%), Positives = 26/43 (60%) Frame = +2 Query: 269 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATT 397 ++T+ +Y C CR ++ + Q +C H +C+ C+A + +++ Sbjct: 43 VKTVEDKYKCEKCRLVLCNPK--QTECGHRFCESCMAALLSSS 83
>PJA1_MOUSE (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)| Length = 605 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +2 Query: 275 TLPGEYFCPVCRTLIYPNE-ALQAQCTHLYCKPCLAYVAATTQACP 409 T+ E CP+C + E A + C H + KPC++ + CP Sbjct: 524 TVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCP 569
>ZN313_PIG (Q6J1I8) Zinc finger protein 313| Length = 228 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 284 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 G + CPVC + + +Q C H++C CL Sbjct: 25 GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 53
>ZN313_PANTR (Q6J212) Zinc finger protein 313| Length = 228 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 284 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 G + CPVC + + +Q C H++C CL Sbjct: 25 GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 53
>ZN313_HUMAN (Q9Y508) Zinc finger protein 313 (RING finger protein 114)| Length = 228 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 284 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 G + CPVC + + +Q C H++C CL Sbjct: 25 GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 53
>E41L1_MOUSE (Q9Z2H5) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)| Length = 879 Score = 29.3 bits (64), Expect = 5.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 261 IHSLSKPIVRPH*LLSSKGSDAGRENRLPATPAQQQDKGS 142 I+ L + + P+ L + D RE RLP++PA KG+ Sbjct: 511 INELKRTLKEPNSKLIHRDRDWDRERRLPSSPASPSPKGT 550
>Y411_BUCBP (Q89AA9) Hypothetical transport protein bbp_411| Length = 394 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%) Frame = +3 Query: 249 IMNVF*IYKLFLVN----IFALFVGHSYTPTKL 335 I+N+F Y LFL+N IF LF G Y P L Sbjct: 158 IVNMFGFYCLFLINSLLSIFCLFFGMFYIPASL 190
>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12| Length = 284 Score = 29.3 bits (64), Expect = 5.5 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 269 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 ++ L E CPVC L+ + + A C H +C+ C+ Sbjct: 6 MKNLKEEVTCPVCLNLMV--KPVSADCGHTFCQGCI 39
>FORD1_AQUAE (O67251) Ferredoxin oxidoreductase 1 subunit forD (EC 1.-.-.-)| (Ferredoxin oxidoreductase 1 delta subunit) Length = 79 Score = 29.3 bits (64), Expect = 5.5 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +2 Query: 293 FCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLVTEADSK 445 FCP TL+Y +E A L CK C V ++ D + A+++ Sbjct: 23 FCPEPNTLMYTDEGHHAYVNTLRCKGCALCVYVCSELLKRDSIEMVYAENR 73
>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50| kDa-stimulated trans-acting factor) (Staf-50) Length = 498 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 E CP+C L+ E L C H +C+ C+ Sbjct: 12 EVTCPICLELL--TEPLSLDCGHSFCQACI 39
>ATL3A_ARATH (Q9SRQ8) RING-H2 finger protein ATL3A| Length = 356 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +2 Query: 296 CPVCRTLIYPNEALQA--QCTHLYCKPCLAYVAATTQACPYDGYLVTEADSKPLVDSIN 466 C VC + NE+L+ +C H + PC+ + CP + + + +VD N Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTN 217
>LNX1_MOUSE (O70263) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-binding protein 1) (Ligand of Numb-protein X 1) Length = 728 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/76 (23%), Positives = 26/76 (34%) Frame = +2 Query: 248 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACPYDGYLV 427 +N + + + C +C + + L C H YC CL CP D V Sbjct: 29 ENHFYTYTEDVDDDLICHICLQALL--DPLDTPCGHTYCTLCLTNFLVEKDFCPVDRKPV 86 Query: 428 TEADSKPLVDSINHLL 475 K +N LL Sbjct: 87 VLQHCKKSSILVNKLL 102
>E41L1_HUMAN (Q9H4G0) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)| Length = 881 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 261 IHSLSKPIVRPH*LLSSKGSDAGRENRLPATPAQQQDKGS 142 I+ L + + P+ L + D RE RLP++PA KG+ Sbjct: 511 INELKRTLKEPNSKLIHRDRDWERERRLPSSPASPSPKGT 550
>RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)| Length = 232 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ--ACPY-DGYLVTE 433 C VC +++ + ++ +C H++C+ C+A CPY YL +E Sbjct: 36 CSVCLEVLH--QPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYLPSE 82
>RAG1_XENLA (Q91829) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1045 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPC-LAYVAATTQACP 409 C VC ++ ++ +Q C HL+C+ C L Y+ CP Sbjct: 294 CLVCEHIL--SDPVQTSCKHLFCRICILKYIKLMGCYCP 330
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +2 Query: 296 CPVCR-TLIYPNEALQAQCTHLYCKPCLAYVAATTQ---ACP 409 C +C +L +P + C H++CKPC+ V + Q CP Sbjct: 754 CAICLDSLTFP---VITHCAHVFCKPCICQVIHSEQPHAKCP 792
>TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger protein 89)| Length = 488 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 E CP+C L+ E L C H +C+ C+ Sbjct: 12 EVTCPICLELL--TEPLSIDCGHSFCQACI 39
>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) (RING finger| protein 70) Length = 643 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +2 Query: 287 EYFCPVCRTLIYPNE-ALQAQCTHLYCKPCLAYVAATTQACP 409 E CP+C + E A + C H + KPC++ + CP Sbjct: 592 EMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCP 633
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/82 (25%), Positives = 30/82 (36%) Frame = +3 Query: 3 STVPGSVAAETPPXXXXXXXXXXXXXXQSAPAFSKRSN*FVSRSPSPTPCPAAGLVWPGG 182 S GS E PP S + + S+ + P+PTP P VWP Sbjct: 150 SLFDGSPTTELPPIQLDRKRSSSDHSLPSIASLNVGSS-LPTLQPTPTPQPPPKFVWPNS 208 Query: 183 DSLCRHQNPYWIEVSEAGQWVS 248 + L + Y+ E G+ S Sbjct: 209 NPL----SAYYAESDNDGRGAS 226
>TRIM5_HUMAN (Q9C035) Tripartite motif protein 5 (EC 6.3.2.-) (RING finger| protein 88) Length = 493 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 E CP+C L+ + L C H +C+ CL Sbjct: 12 EVTCPICLELL--TQPLSLDCGHSFCQACL 39
>YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in chromosome II| Length = 269 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 245 FDNECILN-IQTLPGEYFCPVCRTLIYPNEAL 337 F N CIL+ + T CPVCR ++PN+ + Sbjct: 225 FCNFCILSALGTTAATQKCPVCRRKVHPNKVI 256
>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)| Length = 500 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 263 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 + + + E CP+C L Y + + +C H +C+ CL Sbjct: 1 MEAEDIQEELTCPIC--LDYFQDPVSIECGHNFCRGCL 36
>VPS8_YEAST (P39702) Vacuolar protein sorting-associated protein VPS8| Length = 1274 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 242 GFDNECILNIQTLPGEYFCPVCRT 313 GF C+ N+ P EY C +C+T Sbjct: 1244 GFHQTCLENLAQKPDEYSCLICQT 1267
>TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6| Length = 488 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 287 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 376 E CP+C L+ E L C H +C+ C+ Sbjct: 12 EVTCPICLELL--TEPLSIDCGHSFCQVCI 39
>RNF5_CAEEL (Q09463) RING finger protein 5| Length = 235 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 296 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAAT---TQACP 409 C +C L +A+ + C HL+C PCL+ T Q CP Sbjct: 26 CNIC--LDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCP 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,280,133 Number of Sequences: 219361 Number of extensions: 1401201 Number of successful extensions: 4468 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 4304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4461 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
