ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VP3_ARMV (P24820) P3 protein 29 5.1
2Y907_MYCBO (P64740) Hypothetical protein Mb0907c 28 8.8
3Y883_MYCTU (P64739) Hypothetical protein Rv0883c/MT0906 28 8.8

>VP3_ARMV (P24820) P3 protein|
          Length = 360

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 398 EPAGRWCPAVRPADRWR*QP 339
           EP G W PA + A RW  QP
Sbjct: 262 EPVGFWAPAEKQAPRWEGQP 281



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>Y907_MYCBO (P64740) Hypothetical protein Mb0907c|
          Length = 253

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 129 PGPLWWDRRAWRGEETRGDETKAGKEGRNQNV 34
           P  L WD  AWR E++R     A K GR+ N+
Sbjct: 137 PDSLTWD--AWRNEDSRWTVQLAWKAGRSDNL 166



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>Y883_MYCTU (P64739) Hypothetical protein Rv0883c/MT0906|
          Length = 253

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 129 PGPLWWDRRAWRGEETRGDETKAGKEGRNQNV 34
           P  L WD  AWR E++R     A K GR+ N+
Sbjct: 137 PDSLTWD--AWRNEDSRWTVQLAWKAGRSDNL 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,371,742
Number of Sequences: 219361
Number of extensions: 432350
Number of successful extensions: 1322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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