ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL5_THEVO (Q97BW3) 50S ribosomal protein L5P 28 8.9
2AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoa... 28 8.9

>RL5_THEVO (Q97BW3) 50S ribosomal protein L5P|
          Length = 170

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 363 LPKEIFLKDYKKPDYLFD 416
           L K +++KDYK PDY FD
Sbjct: 75  LNKALYVKDYKIPDYSFD 92



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>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
           hydrolase)
          Length = 869

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 363 LPKEIFLKDYKKPDYLFDTVDLEFQL 440
           L K  + KDYK+PD+    + L+FQL
Sbjct: 2   LAKAKYRKDYKQPDFTVTDIYLDFQL 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,216,900
Number of Sequences: 219361
Number of extensions: 1095290
Number of successful extensions: 2627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2627
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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