ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001024889.1| Rattus norvegicus reproductive homeobox on X... 44 0.14
2gb|DQ058652.1| Rattus norvegicus reproductive homeobox on X chro... 44 0.14
3ref|NM_197848.1| Oryza sativa (japonica cultivar-group) putative... 40 2.2
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
5gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003... 40 2.2
6gb|AC022096.7| Homo sapiens chromosome 5 clone CTB-43D14, comple... 40 2.2
7dbj|AK108363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.2
8gb|AY609905.1| Sus scrofa clone Clu_41847.scr.msk.p1.Contig1, mR... 40 2.2
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.2
10gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, comple... 40 2.2
11ref|XM_550383.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.7
12ref|XM_525281.1| PREDICTED: Pan troglodytes similar to Hepatocyt... 38 8.7
13ref|XM_482150.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.7
14gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 sect... 38 8.7
15gb|AY676931.1| Oryza sativa (indica cultivar-group) transcriptio... 38 8.7
16gb|AF176110.1| Homo sapiens hepatocyte nuclear factor-3 beta (HN... 38 8.7
17gb|AE009952.1| Yersinia pestis KIM, complete genome 38 8.7
18ref|XM_380473.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 38 8.7
19gb|AC131700.3| Mus musculus BAC clone RP24-67N3 from chromosome ... 38 8.7
20gb|AC122037.2| Mus musculus BAC clone RP24-426D9 from 3, complet... 38 8.7
21gb|U97592.2| Caenorhabditis elegans cosmid C14A11, complete sequ... 38 8.7
22gb|AC146705.11| Medicago truncatula clone mth2-101f3, complete s... 38 8.7
23emb|AL158074.18| Human DNA sequence from clone RP11-330J23 on ch... 38 8.7
24emb|AL139392.10| Human DNA sequence from clone RP1-302G2 on chro... 38 8.7
25emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L2... 38 8.7
26emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 ... 38 8.7
27emb|AL024495.1|HS404L14 Human DNA sequence from clone RP3-404L14... 38 8.7
28emb|AL022315.1|HS1177I5 Human DNA sequence from clone RP5-1177I5... 38 8.7
29gb|AC096685.3| Takifugu rubripes clone 247M7, complete sequence 38 8.7
30emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 38 8.7
31emb|AJ414142.1| Yersinia pestis strain CO92 complete genome; seg... 38 8.7
32emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete... 38 8.7
33gb|AC114408.18| Mus musculus chromosome 5, clone RP23-51J22, com... 38 8.7
34gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswe... 38 8.7
35tpg|BK005072.1| TPA: TPA_inf: Oryza sativa (indica cultivar-grou... 38 8.7
36gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2)... 38 8.7
37ref|NM_076089.2| Caenorhabditis elegans Sperm-Specific family, c... 38 8.7
38gb|AC090527.3|AC090527 Homo sapiens chromosome 15 clone RP11-96O... 38 8.7
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
41dbj|AB210474.1| Ciona intestinalis mRNA for transcription factor... 38 8.7
42dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
43dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
44dbj|AK174067.1| Ciona intestinalis cDNA, clone:ciad056k04, full ... 38 8.7
45dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
46dbj|AK111606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.7
47gb|AF147787.1|AF147787 Homo sapiens hepatocyte nuclear factor-3 ... 38 8.7
48gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75... 38 8.7
49gb|AY610051.1| Sus scrofa clone Clu_60320.scr.msk.p1.Contig1, mR... 38 8.7
50gb|AC121792.3| Mus musculus BAC clone RP23-404J7 from 3, complet... 38 8.7
51emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 38 8.7
52emb|AL627252.16| Mouse DNA sequence from clone RP23-272P17 on ch... 38 8.7 
>ref|NM_001024889.1| Rattus norvegicus reproductive homeobox on X chromosome 4
           (LOC313451), mRNA
          Length = 829

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 45  ctccttccccatctgctgctgc 66
           ||||||||||||||||||||||
Sbjct: 175 ctccttccccatctgctgctgc 154
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>gb|DQ058652.1| Rattus norvegicus reproductive homeobox on X chromosome 4 mRNA,
           complete cds
          Length = 829

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 45  ctccttccccatctgctgctgc 66
           ||||||||||||||||||||||
Sbjct: 175 ctccttccccatctgctgctgc 154
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>ref|NM_197848.1| Oryza sativa (japonica cultivar-group) putative AT-Hook DNA-binding
           protein (OSJNBa0003O19.1), mRNA
          Length = 1602

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  tcctccgcctccggcggcgc 41
           ||||||||||||||||||||
Sbjct: 778 tcctccgcctccggcggcgc 797
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       tcctccgcctccggcggcgc 41
                ||||||||||||||||||||
Sbjct: 22224863 tcctccgcctccggcggcgc 22224844
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>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete
             sequence
          Length = 172427

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tcctccgcctccggcggcgc 41
             ||||||||||||||||||||
Sbjct: 42106 tcctccgcctccggcggcgc 42087
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>gb|AC022096.7| Homo sapiens chromosome 5 clone CTB-43D14, complete sequence
          Length = 170624

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   gctctctccttccccatctg 59
            ||||||||||||||||||||
Sbjct: 3542 gctctctccttccccatctg 3561
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>dbj|AK108363.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C12, full
           insert sequence
          Length = 1043

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  tcctccgcctccggcggcgc 41
           ||||||||||||||||||||
Sbjct: 225 tcctccgcctccggcggcgc 244
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>gb|AY609905.1| Sus scrofa clone Clu_41847.scr.msk.p1.Contig1, mRNA sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 68  tcgtctggtggtgctgg-gtttgggatg 94
           ||||||||||||||||| ||||||||||
Sbjct: 122 tcgtctggtggtgctggtgtttgggatg 149
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       tcctccgcctccggcggcgc 41
                ||||||||||||||||||||
Sbjct: 22236931 tcctccgcctccggcggcgc 22236912
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>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence
          Length = 184981

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gctctctccttccccatctg 59
              ||||||||||||||||||||
Sbjct: 162177 gctctctccttccccatctg 162196
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>ref|XM_550383.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1365

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  tcctccgcctccggcggcg 40
           |||||||||||||||||||
Sbjct: 235 tcctccgcctccggcggcg 253
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>ref|XM_525281.1| PREDICTED: Pan troglodytes similar to Hepatocyte nuclear factor
           3-beta (HNF-3B) (Forkhead box protein A2) (LOC469896),
           mRNA
          Length = 468

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  cggcggcgctctctccttcccca 55
           ||||||||||| |||||||||||
Sbjct: 319 cggcggcgctcgctccttcccca 341
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>ref|XM_482150.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1377

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  tcctccgcctccggcggcg 40
           |||||||||||||||||||
Sbjct: 323 tcctccgcctccggcggcg 341
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>gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 section 2 of 16 of the
              complete genome
          Length = 290803

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     gctgcctcgtctggtggtg 80
              |||||||||||||||||||
Sbjct: 183555 gctgcctcgtctggtggtg 183537
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>gb|AY676931.1| Oryza sativa (indica cultivar-group) transcription factor WRKY32
           (WRKY32) mRNA, complete cds
          Length = 960

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  tcctccgcctccggcggcg 40
           |||||||||||||||||||
Sbjct: 187 tcctccgcctccggcggcg 205
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>gb|AF176110.1| Homo sapiens hepatocyte nuclear factor-3 beta (HNF3B) gene, complete
            cds
          Length = 5227

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 33   cggcggcgctctctccttcccca 55
            ||||||||||| |||||||||||
Sbjct: 1707 cggcggcgctcgctccttcccca 1729
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     gctgcctcgtctggtggtg 80
              |||||||||||||||||||
Sbjct: 618652 gctgcctcgtctggtggtg 618634
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>ref|XM_380473.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00297.1)
            partial mRNA
          Length = 2160

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 73   tggtggtgctgggtttggg 91
            |||||||||||||||||||
Sbjct: 1341 tggtggtgctgggtttggg 1323
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>gb|AC131700.3| Mus musculus BAC clone RP24-67N3 from chromosome 6, complete sequence
          Length = 197050

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    ctctctccttccccatctg 59
             |||||||||||||||||||
Sbjct: 81250 ctctctccttccccatctg 81268
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>gb|AC122037.2| Mus musculus BAC clone RP24-426D9 from 3, complete sequence
          Length = 185938

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     gctgggtttgggatgatcc 98
              |||||||||||||||||||
Sbjct: 130175 gctgggtttgggatgatcc 130193
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>gb|U97592.2| Caenorhabditis elegans cosmid C14A11, complete sequence
          Length = 41630

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    cgtctggtggtgctgggtt 87
             |||||||||||||||||||
Sbjct: 41255 cgtctggtggtgctgggtt 41237
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>gb|AC146705.11| Medicago truncatula clone mth2-101f3, complete sequence
          Length = 120058

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    tggtggtgctgggtttggg 91
             |||||||||||||||||||
Sbjct: 10209 tggtggtgctgggtttggg 10191
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>emb|AL158074.18| Human DNA sequence from clone RP11-330J23 on chromosome 9p21.1-22.3,
            complete sequence
          Length = 133690

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   ctctctccttccccatctg 59
            |||||||||||||||||||
Sbjct: 2128 ctctctccttccccatctg 2110
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>emb|AL139392.10| Human DNA sequence from clone RP1-302G2 on chromosome 6p11.2-21.1
             Contains the SLC29A1 gene for equilibrative nucleoside
             transporter 1, the HSPCB gene for heat-shock 90 kDa
             protein 1 beta, a novel gene similar to D. melanogaster
             slalom (sll), the NFKBIE gene for nuclear factor of kappa
             light polypeptide gene enhancer in B-cells inhibitor
             epsilon, a novel gene similar to C. elegans ZK1067.4 and
             seven CpG islands, complete sequence
          Length = 61226

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 26    ccgcctccggcggcgctctctcc 48
             ||||| |||||||||||||||||
Sbjct: 55266 ccgccgccggcggcgctctctcc 55244
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>emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L20 on chromosome 20 Contains the
             FOXA2 gene for forkhead box A2, a novel gene, the 5' end
             of the C20orf56 gene for chromosome 20 open reading frame
             56, the 5' end of a novel gene and five CpG islands,
             complete sequence
          Length = 120869

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 33    cggcggcgctctctccttcccca 55
             ||||||||||| |||||||||||
Sbjct: 36040 cggcggcgctcgctccttcccca 36018
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>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains
              the CDH22 gene for cadherin-like 22, a novel gene and two
              CpG islands, complete sequence
          Length = 147815

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     ctctctccttccccatctg 59
              |||||||||||||||||||
Sbjct: 110811 ctctctccttccccatctg 110793
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>emb|AL024495.1|HS404L14 Human DNA sequence from clone RP3-404L14 on chromosome 22q12.1-12.3
             Contains STSs and GSSs, complete sequence
          Length = 106025

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    tctccttccccatctgctg 62
             |||||||||||||||||||
Sbjct: 90097 tctccttccccatctgctg 90079
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>emb|AL022315.1|HS1177I5 Human DNA sequence from clone RP5-1177I5 on chromosome 22q13.1,
             complete sequence
          Length = 96256

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    ccccatctgctgctgcctc 69
             |||||||||||||||||||
Sbjct: 48370 ccccatctgctgctgcctc 48352
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>gb|AC096685.3| Takifugu rubripes clone 247M7, complete sequence
          Length = 57618

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    ccatctgctgctgcctcgt 71
             |||||||||||||||||||
Sbjct: 13099 ccatctgctgctgcctcgt 13081
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     gctgcctcgtctggtggtg 80
              |||||||||||||||||||
Sbjct: 414069 gctgcctcgtctggtggtg 414051
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>emb|AJ414142.1| Yersinia pestis strain CO92 complete genome; segment 2/20
          Length = 214050

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 62   gctgcctcgtctggtggtg 80
            |||||||||||||||||||
Sbjct: 3821 gctgcctcgtctggtggtg 3803
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>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 22    tcctccgcctccggcggcgctctctcc 48
             ||||||||||||  |||||||||||||
Sbjct: 13524 tcctccgcctcctccggcgctctctcc 13550
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>gb|AC114408.18| Mus musculus chromosome 5, clone RP23-51J22, complete sequence
          Length = 230044

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    gctctctccttccccatct 58
             |||||||||||||||||||
Sbjct: 62392 gctctctccttccccatct 62410
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>gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswell Park Cancer Institute
              Drosophila BAC library) complete sequence
          Length = 168058

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      ctctgtttctttcggtttc 19
              |||||||||||||||||||
Sbjct: 130589 ctctgtttctttcggtttc 130607
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>tpg|BK005072.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY
           transcription factor 69 (WRKY69) gene, complete cds
          Length = 1054

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  tcctccgcctccggcggcg 40
           |||||||||||||||||||
Sbjct: 187 tcctccgcctccggcggcg 205
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>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds
          Length = 68460

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 73   tggtggtgctgggtttggg 91
            |||||||||||||||||||
Sbjct: 2752 tggtggtgctgggtttggg 2770
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>ref|NM_076089.2| Caenorhabditis elegans Sperm-Specific family, class R family
          member (ssr-2) (ssr-2) mRNA, complete cds
          Length = 999

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 69 cgtctggtggtgctgggtt 87
          |||||||||||||||||||
Sbjct: 55 cgtctggtggtgctgggtt 73
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>gb|AC090527.3|AC090527 Homo sapiens chromosome 15 clone RP11-96O20 map 15q21.1, complete
              sequence
          Length = 173585

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     ttccccatctgctgctgcc 67
              |||||||||||||||||||
Sbjct: 109910 ttccccatctgctgctgcc 109928
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 22       tcctccgcctccggcggcg 40
                |||||||||||||||||||
Sbjct: 18213124 tcctccgcctccggcggcg 18213142
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 22      tcctccgcctccggcggcg 40
               |||||||||||||||||||
Sbjct: 4080550 tcctccgcctccggcggcg 4080568
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>dbj|AB210474.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: ciad056k04
          Length = 1614

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 59  gctgctgcctcgtctggtg 77
           |||||||||||||||||||
Sbjct: 731 gctgctgcctcgtctggtg 749
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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tcctccgcctccggcggcg 40
             |||||||||||||||||||
Sbjct: 47293 tcctccgcctccggcggcg 47311
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tcctccgcctccggcggcg 40
             |||||||||||||||||||
Sbjct: 27521 tcctccgcctccggcggcg 27539
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>dbj|AK174067.1| Ciona intestinalis cDNA, clone:ciad056k04, full insert sequence
          Length = 1619

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 59  gctgctgcctcgtctggtg 77
           |||||||||||||||||||
Sbjct: 733 gctgctgcctcgtctggtg 751
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>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0434E03
          Length = 142414

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tcctccgcctccggcggcg 40
             |||||||||||||||||||
Sbjct: 35436 tcctccgcctccggcggcg 35454
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>dbj|AK111606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102P22, full
           insert sequence
          Length = 1378

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  tcctccgcctccggcggcg 40
           |||||||||||||||||||
Sbjct: 323 tcctccgcctccggcggcg 341
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>gb|AF147787.1|AF147787 Homo sapiens hepatocyte nuclear factor-3 beta gene, complete cds
          Length = 4471

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 33   cggcggcgctctctccttcccca 55
            ||||||||||| |||||||||||
Sbjct: 1789 cggcggcgctcgctccttcccca 1811
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>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete
              sequence
          Length = 314904

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      ctctgtttctttcggtttc 19
              |||||||||||||||||||
Sbjct: 227191 ctctgtttctttcggtttc 227209
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>gb|AY610051.1| Sus scrofa clone Clu_60320.scr.msk.p1.Contig1, mRNA sequence
          Length = 1345

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 13 cggtttcagtcctccgcct 31
          |||||||||||||||||||
Sbjct: 20 cggtttcagtcctccgcct 2
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>gb|AC121792.3| Mus musculus BAC clone RP23-404J7 from 3, complete sequence
          Length = 191723

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 80   gctgggtttgggatgatcc 98
            |||||||||||||||||||
Sbjct: 4459 gctgggtttgggatgatcc 4477
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    ctctccttccccatctgct 61
             |||||||||||||||||||
Sbjct: 65163 ctctccttccccatctgct 65181
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>emb|AL627252.16| Mouse DNA sequence from clone RP23-272P17 on chromosome 11, complete
             sequence
          Length = 137878

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    cttccccatctgctgctgc 66
             |||||||||||||||||||
Sbjct: 84866 cttccccatctgctgctgc 84884


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,929,337
Number of Sequences: 3902068
Number of extensions: 1929337
Number of successful extensions: 137316
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 136980
Number of HSP's gapped (non-prelim): 337
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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