ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl28g08 |
|---|---|
| Clone Library Name | barley_pub |
>FAD21_MYCTU (P63523) Putative fatty-acid--CoA ligase fadD21 (EC 6.2.1.-)| (Acyl-CoA synthetase) Length = 578 Score = 32.0 bits (71), Expect = 0.87 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +2 Query: 293 GEVLMVPRTGNPIGGRERTGKVGTLQEVKLLQTGLIQEMVII 418 G +L+ P G P G RTG +G L E ++ G +++M+I+ Sbjct: 425 GAMLVHPSAGTPDGSWLRTGDLGFLSEDEMFIVGRMKDMLIV 466
>FAD21_MYCBO (P63524) Putative fatty-acid--CoA ligase fadD21 (EC 6.2.1.-)| (Acyl-CoA synthetase) Length = 578 Score = 32.0 bits (71), Expect = 0.87 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +2 Query: 293 GEVLMVPRTGNPIGGRERTGKVGTLQEVKLLQTGLIQEMVII 418 G +L+ P G P G RTG +G L E ++ G +++M+I+ Sbjct: 425 GAMLVHPSAGTPDGSWLRTGDLGFLSEDEMFIVGRMKDMLIV 466
>FAD21_MYCLE (P54200) Putative fatty-acid--CoA ligase fadD21 (EC 6.2.1.-)| (Acyl-CoA synthetase) Length = 579 Score = 29.3 bits (64), Expect = 5.6 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +2 Query: 281 QRFQGEVLMVPRTGNPIGGRERTGKVGTLQEVKLLQTGLIQEMVII 418 QR G L P G P G RTG +G + E +L G +++++I+ Sbjct: 422 QRTFGGKLANPSPGTPEGPWLRTGDLGFISEDELFIVGRMKDLLIV 467
>MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific homeobox)| Length = 303 Score = 28.9 bits (63), Expect = 7.3 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 367 SGSETSADRADTRDGDYSSDHNKHGREKR 453 SGS+ +D +D+++G+Y S+ N R++R Sbjct: 162 SGSKRKSDSSDSQEGNYKSEVNSKPRKER 190
>MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)| Length = 303 Score = 28.9 bits (63), Expect = 7.3 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 367 SGSETSADRADTRDGDYSSDHNKHGREKR 453 SGS+ +D +D+++G+Y S+ N R++R Sbjct: 162 SGSKRKSDSSDSQEGNYKSEVNSKPRKER 190
>SYN_BUCAI (P57441) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 302 LMVPRTGNPIGGRERTGKVGTLQEVKLLQTGLIQE 406 ++VP G IGG +R ++ L E +LL+ GL +E Sbjct: 382 ILVPNVGELIGGSQREERIAILDE-RLLELGLKKE 415
>RL30E_SULAC (P11522) 50S ribosomal protein L30e| Length = 104 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = +2 Query: 281 QRFQGEVLMVPRTGNPIGGRERTGKVGTLQEVKLLQTGLIQEMVIILLTIISTAGKRDLH 460 Q F+GE+ + R+G I +GT + +KLL+TG ++ +V +S+ ++DL Sbjct: 3 QSFEGELKTLLRSGKVI--------LGTRKTLKLLKTGKVKGVV------VSSTLRQDLK 48 Query: 461 DTQMS 475 D M+ Sbjct: 49 DDIMT 53
>DSPP_MOUSE (P97399) Dentin sialophosphoprotein precursor (Dentin matrix| protein 3) (DMP-3) [Contains: Dentin phosphoprotein (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)] Length = 934 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 361 DSSGSETSADRADTRDGDYSSDHNKHGREKRPS*HADES 477 DSSGS S+D +DT D SSD + S +D S Sbjct: 593 DSSGSSDSSDSSDTCDSSDSSDSSDSSDSSDSSDSSDSS 631 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.129 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,867,894 Number of Sequences: 219361 Number of extensions: 878605 Number of successful extensions: 2760 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2712 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
