Clone Information

BLAST Search Result

Clone Name	bastl28g05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_191586.2\| Oryza sativa (japonica cultivar-group), mRNA	422	e-115
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	422	e-115
3	dbj\|AP003215.3\| Oryza sativa (japonica cultivar-group) genomic D...	422	e-115
4	dbj\|AK121690.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	422	e-115
5	emb\|AJ535079.1\|OSA535079 Oryza sativa (japonica cultivar-group) ...	422	e-115
6	gb\|AF532601.1\| Triticum aestivum multidrug resistance associated...	373	e-100
7	ref\|NM_100293.2\| Arabidopsis thaliana ATMRP5 AT1G04120 (ATMRP5) ...	54	4e-04
8	emb\|Y11250.1\|ATMRPPROT Arabidopsis thaliana mRNA for putative MR...	54	4e-04
9	gb\|AF225908.1\|AF225908 Arabidopsis thaliana sulfonylurea recepto...	54	4e-04
10	gb\|AC002411.1\|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D2...	54	4e-04
11	gb\|BT009567.1\| Triticum aestivum clone wre1n.pk0015.d11:fis, ful...	50	0.006
12	ref\|NM_112148.3\| Arabidopsis thaliana ATMRP8 AT3G13090 (ATMRP8) ...	48	0.024
13	gb\|AY052368.1\| Arabidopsis thaliana ATP-binding cassette transpo...	48	0.024
14	dbj\|AB162907.1\| Thlaspi caerulescens TcMRP3 mRNA for multidrug r...	48	0.024
15	dbj\|AP000375.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	48	0.024
16	emb\|BX323864.8\| Zebrafish DNA sequence from clone CH211-218K4 in...	46	0.095
17	emb\|BX511254.6\| Zebrafish DNA sequence from clone DKEYP-90G2 in ...	46	0.095
18	gb\|AC167137.7\| Mus musculus chromosome 1, clone RP23-408P8, comp...	42	1.5
19	gb\|AC138399.18\| Mus musculus chromosome 1, clone RP23-113N18, co...	42	1.5
20	ref\|NM_142581.1\| Drosophila melanogaster CG4562-RA (CG4562), mRNA	42	1.5
21	gb\|AC007711.9\|AC007711 Drosophila melanogaster, chromosome 3R, r...	42	1.5
22	gb\|BT021352.1\| Drosophila melanogaster LP18549 full insert cDNA	42	1.5
23	gb\|AE003728.3\| Drosophila melanogaster chromosome 3R, section 66...	42	1.5
24	ref\|XM_465011.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.8
25	gb\|AC113989.6\| Mus musculus chromosome 3, clone RP24-130I14, com...	40	5.8
26	ref\|XM_591649.2\| PREDICTED: Bos taurus similar to coiled-coil-he...	40	5.8
27	gb\|AC164405.4\| Mus musculus chromosome 3, clone RP24-286C1, comp...	40	5.8
28	gb\|AC125096.3\| Mus musculus BAC clone RP24-181K19 from chromosom...	40	5.8
29	gb\|BC112827.1\| Bos taurus similar to coiled-coil-helix-coiled-co...	40	5.8
30	emb\|AL354996.9\| Human DNA sequence from clone RP11-478H12 on chr...	40	5.8
31	emb\|AL162724.16\| Human DNA sequence from clone RP11-121A14 on ch...	40	5.8
32	emb\|AL079340.7\|HSJ760G15 Human DNA sequence from clone RP4-760G1...	40	5.8
33	gb\|AY129950.1\| Homo sapiens cAMP-specific phosphodiesterase 8B (...	40	5.8
34	gb\|AC090007.8\| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP...	40	5.8
35	gb\|AC022422.5\| Homo sapiens chromosome 5 clone CTD-2199L4, compl...	40	5.8
36	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
37	gb\|AC129572.6\| Mus musculus chromosome 5, clone RP23-452L7, comp...	40	5.8
38	dbj\|AP004168.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
39	gb\|AC113018.7\| Mus musculus chromosome 5, clone RP23-183C18, com...	40	5.8
40	emb\|AJ535078.1\|OSA535078 Oryza sativa (japonica cultivar-group) ...	40	5.8

>ref|NM_191586.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5018

 Score =  422 bits (213), Expect = e-115
 Identities = 379/433 (87%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacagga 60
            ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1802 tatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctcttgacagga 1861

                                                                        
Query: 61   tagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggctaccaagtg 120
            ||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || |||||||
Sbjct: 1862 tagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaacttccaagtg 1921

                                                                        
Query: 121  gtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggctcacctg 180
            |||||||  ||||||||||||||||||| ||||||||||| || ||||| | ||||||||
Sbjct: 1922 gtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcctcacctg 1981

                                                                        
Query: 181  agctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgttgcagtct 240
            |  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| |||||||||
Sbjct: 1982 aagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtattgcagtct 2041

                                                                        
Query: 241  gtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgccaa 300
            ||||||| || ||||||||||||||||||||| | |||||||||||||||||| | ||||
Sbjct: 2042 gtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgagattccaa 2101

                                                                        
Query: 301  agctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacggcatgga 360
            |||||||||||||||||||||| || || || ||||| ||||| |||||| |||| ||||
Sbjct: 2102 agctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcggcgtgga 2161

                                                                        
Query: 361  tacagagtggcaaaattcaggacaacatactcttcggcaaggagatggactgtgagaa-t 419
            |||||||||| || ||||||||||||||||| || |||||| |||||||   |||||| |
Sbjct: 2162 tacagagtggtaagattcaggacaacatactgtttggcaagcagatggataatgagaagt 2221

                         
Query: 420  atgacagggtcct 432
            |||||||||||||
Sbjct: 2222 atgacagggtcct 2234

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  422 bits (213), Expect = e-115
 Identities = 379/433 (87%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                           
Query: 1       tatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacagga 60
               ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3805472 tatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctcttgacagga 3805531

                                                                           
Query: 61      tagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggctaccaagtg 120
               ||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || |||||||
Sbjct: 3805532 tagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaacttccaagtg 3805591

                                                                           
Query: 121     gtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggctcacctg 180
               |||||||  ||||||||||||||||||| ||||||||||| || ||||| | ||||||||
Sbjct: 3805592 gtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcctcacctg 3805651

                                                                           
Query: 181     agctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgttgcagtct 240
               |  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| |||||||||
Sbjct: 3805652 aagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtattgcagtct 3805711

                                                                           
Query: 241     gtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgccaa 300
               ||||||| || ||||||||||||||||||||| | |||||||||||||||||| | ||||
Sbjct: 3805712 gtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgagattccaa 3805771

                                                                           
Query: 301     agctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacggcatgga 360
               |||||||||||||||||||||| || || || ||||| ||||| |||||| |||| ||||
Sbjct: 3805772 agctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcggcgtgga 3805831

                                                                           
Query: 361     tacagagtggcaaaattcaggacaacatactcttcggcaaggagatggactgtgagaa-t 419
               |||||||||| || ||||||||||||||||| || |||||| |||||||   |||||| |
Sbjct: 3805832 tacagagtggtaagattcaggacaacatactgtttggcaagcagatggataatgagaagt 3805891

                            
Query: 420     atgacagggtcct 432
               |||||||||||||
Sbjct: 3805892 atgacagggtcct 3805904

to top

>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0089K24
          Length = 154137

 Score =  422 bits (213), Expect = e-115
 Identities = 379/433 (87%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1     tatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacagga 60
             ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 79014 tatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctcttgacagga 79073

                                                                         
Query: 61    tagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggctaccaagtg 120
             ||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || |||||||
Sbjct: 79074 tagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaacttccaagtg 79133

                                                                         
Query: 121   gtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggctcacctg 180
             |||||||  ||||||||||||||||||| ||||||||||| || ||||| | ||||||||
Sbjct: 79134 gtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcctcacctg 79193

                                                                         
Query: 181   agctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgttgcagtct 240
             |  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| |||||||||
Sbjct: 79194 aagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtattgcagtct 79253

                                                                         
Query: 241   gtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgccaa 300
             ||||||| || ||||||||||||||||||||| | |||||||||||||||||| | ||||
Sbjct: 79254 gtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgagattccaa 79313

                                                                         
Query: 301   agctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacggcatgga 360
             |||||||||||||||||||||| || || || ||||| ||||| |||||| |||| ||||
Sbjct: 79314 agctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcggcgtgga 79373

                                                                         
Query: 361   tacagagtggcaaaattcaggacaacatactcttcggcaaggagatggactgtgagaa-t 419
             |||||||||| || ||||||||||||||||| || |||||| |||||||   |||||| |
Sbjct: 79374 tacagagtggtaagattcaggacaacatactgtttggcaagcagatggataatgagaagt 79433

                          
Query: 420   atgacagggtcct 432
             |||||||||||||
Sbjct: 79434 atgacagggtcct 79446

to top

>dbj|AK121690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F24, full
            insert sequence
          Length = 5017

 Score =  422 bits (213), Expect = e-115
 Identities = 379/433 (87%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacagga 60
            ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1802 tatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctcttgacagga 1861

                                                                        
Query: 61   tagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggctaccaagtg 120
            ||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || |||||||
Sbjct: 1862 tagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaacttccaagtg 1921

                                                                        
Query: 121  gtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggctcacctg 180
            |||||||  ||||||||||||||||||| ||||||||||| || ||||| | ||||||||
Sbjct: 1922 gtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcctcacctg 1981

                                                                        
Query: 181  agctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgttgcagtct 240
            |  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| |||||||||
Sbjct: 1982 aagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtattgcagtct 2041

                                                                        
Query: 241  gtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgccaa 300
            ||||||| || ||||||||||||||||||||| | |||||||||||||||||| | ||||
Sbjct: 2042 gtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgagattccaa 2101

                                                                        
Query: 301  agctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacggcatgga 360
            |||||||||||||||||||||| || || || ||||| ||||| |||||| |||| ||||
Sbjct: 2102 agctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcggcgtgga 2161

                                                                        
Query: 361  tacagagtggcaaaattcaggacaacatactcttcggcaaggagatggactgtgagaa-t 419
            |||||||||| || ||||||||||||||||| || |||||| |||||||   |||||| |
Sbjct: 2162 tacagagtggtaagattcaggacaacatactgtttggcaagcagatggataatgagaagt 2221

                         
Query: 420  atgacagggtcct 432
            |||||||||||||
Sbjct: 2222 atgacagggtcct 2234

to top

>emb|AJ535079.1|OSA535079 Oryza sativa (japonica cultivar-group) mrp3 gene for MRP-like ABC
            transporter, exons 1-10
          Length = 5514

 Score =  422 bits (213), Expect = e-115
 Identities = 379/433 (87%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tatacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacagga 60
            ||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1733 tatacaatcttcccgacacgatctcaatgttgattcagaccaaggtgtctcttgacagga 1792

                                                                        
Query: 61   tagcatctttcctatgccttgaggagttgccgacggatgctgtggacaggctaccaagtg 120
            ||||||| ||  ||||||| ||||| |||||||| |||||||||   |  || |||||||
Sbjct: 1793 tagcatcctttttatgcctcgaggaattgccgactgatgctgtgctgaaacttccaagtg 1852

                                                                        
Query: 121  gtagctctaatgttgcaattgaggtcagcaatgggtgcttctcctgggacggctcacctg 180
            |||||||  ||||||||||||||||||| ||||||||||| || ||||| | ||||||||
Sbjct: 1853 gtagctcagatgttgcaattgaggtcagaaatgggtgcttttcttgggatgcctcacctg 1912

                                                                        
Query: 181  agctgccaacgctgaaggacctgaattttcaagctcagcaaggcatgcgtgttgcagtct 240
            |  |||||||| ||||||| ||||| ||||||||||| ||||| |||||| |||||||||
Sbjct: 1913 aagtgccaacgttgaaggatctgaactttcaagctcaacaaggtatgcgtattgcagtct 1972

                                                                        
Query: 241  gtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgccaa 300
            ||||||| || ||||||||||||||||||||| | |||||||||||||||||| | ||||
Sbjct: 1973 gtgggactgtcggctctggaaaatcaagcttgttgtcttgcattcttggtgagattccaa 2032

                                                                        
Query: 301  agctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccagacggcatgga 360
            |||||||||||||||||||||| || || || ||||| ||||| |||||| |||| ||||
Sbjct: 2033 agctatcaggagaggtcaagacctgtgggacgatggcgtatgtgagccagtcggcgtgga 2092

                                                                        
Query: 361  tacagagtggcaaaattcaggacaacatactcttcggcaaggagatggactgtgagaa-t 419
            |||||||||| || ||||||||||||||||| || |||||| |||||||   |||||| |
Sbjct: 2093 tacagagtggtaagattcaggacaacatactgtttggcaagcagatggataatgagaagt 2152

                         
Query: 420  atgacagggtcct 432
            |||||||||||||
Sbjct: 2153 atgacagggtcct 2165

to top

>gb|AF532601.1| Triticum aestivum multidrug resistance associated protein MRP2 mRNA,
            complete cds
          Length = 4857

 Score =  373 bits (188), Expect = e-100
 Identities = 342/392 (87%), Gaps = 1/392 (0%)
 Strand = Plus / Plus

                                                                        
Query: 36   cagaccaaggtgtctcttgacaggatagcatctttcctatgccttgaggagttgccgacg 95
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1987 cagaccaaggtgtctcttgacaggatagcatccttcctatgcctcgaggagttcccgacg 2046

                                                                        
Query: 96   gatgctgtggacaggctaccaagtggtagctctaatgttgcaattgaggtcagcaatggg 155
            || || ||| | ||||| ||||  || |||||  |||||||||| |||||||||||||||
Sbjct: 2047 gacgccgtgcagaggctgccaatcggcagctcagatgttgcaatcgaggtcagcaatggg 2106

                                                                        
Query: 156  tgcttctcctgggacggctcacctgagctgccaacgctgaaggacctgaattttcaagct 215
            |||||||||||||||| ||| |||||  |||||||||| |||||||| || |||||||||
Sbjct: 2107 tgcttctcctgggacgcctcgcctgaaatgccaacgctcaaggacctcaactttcaagct 2166

                                                                        
Query: 216  cagcaaggcatgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctc 275
            | || ||||||||||||||||||||| |||||||| ||||| || ||||| ||| |||||
Sbjct: 2167 cggcgaggcatgcgtgttgcagtctgcgggacggtcggctccgggaaatcgagcctgctc 2226

                                                                        
Query: 276  tcttgcattcttggtgaggtgccaaagctatcaggagaggtcaagacttgcggaacaatg 335
            |||||||||||||| ||||| || ||||||||||||| |||||||||||| || ||| | 
Sbjct: 2227 tcttgcattcttggcgaggttccgaagctatcaggagtggtcaagacttgtgggacagta 2286

                                                                        
Query: 336  gcatatgtcagccagacggcatggatacagagtggcaaaattcaggacaacatactcttc 395
            || ||||| |||||| | || ||||||||||| |||||  ||||||| |||||||| |||
Sbjct: 2287 gcctatgtgagccagtcagcgtggatacagagcggcaaggttcaggagaacatactgttc 2346

                                            
Query: 396  ggcaaggagatggactgtgagaa-tatgacag 426
            |||||| |||||||| ||||||| ||||||||
Sbjct: 2347 ggcaagcagatggacagtgagaagtatgacag 2378

to top

>ref|NM_100293.2| Arabidopsis thaliana ATMRP5 AT1G04120 (ATMRP5) mRNA, complete cds
          Length = 5277

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 225  atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 283
            |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 2289 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 2347

to top

>emb|Y11250.1|ATMRPPROT Arabidopsis thaliana mRNA for putative MRP protein
          Length = 4992

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 225  atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 283
            |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 2157 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 2215

to top

>gb|AF225908.1|AF225908 Arabidopsis thaliana sulfonylurea receptor-like protein mRNA,
            complete cds
          Length = 5012

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 225  atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 283
            |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 2177 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 2235

to top

>gb|AC002411.1|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D22 sequence, complete
             sequence
          Length = 78259

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 225   atgcgtgttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcat 283
             |||||||| || |||||||| || || ||||||||||||||||| ||  ||||||||||
Sbjct: 57431 atgcgtgtggctgtctgtggcacagttggctctggaaaatcaagttttatctcttgcat 57489

to top

>gb|BT009567.1| Triticum aestivum clone wre1n.pk0015.d11:fis, full insert mRNA
           sequence
          Length = 1069

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 133/169 (78%)
 Strand = Plus / Minus

                                                                       
Query: 231 gttgcagtctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggt 290
           ||||| |||||||| || || || ||||| |||||||| ||  | |||||||| || |||
Sbjct: 275 gttgctgtctgtggaacagttggatctggcaaatcaagtttattgtcttgcatactcggt 216

                                                                       
Query: 291 gaggtgccaaagctatcaggagaggtcaagacttgcggaacaatggcatatgtcagccag 350
           ||| | |||||  ||||||||||||| || ||||| || |  ||  | ||||| ||||| 
Sbjct: 215 gagataccaaaattatcaggagaggttaaaacttgtggcaggatctcctatgttagccaa 156

                                                            
Query: 351 acggcatggatacagagtggcaaaattcaggacaacatactcttcggca 399
           ||  | |||||||||||||| |||||| | || || ||||| |||||||
Sbjct: 155 acaccttggatacagagtgggaaaattgaagataatatacttttcggca 107

to top

>ref|NM_112148.3| Arabidopsis thaliana ATMRP8 AT3G13090 (ATMRP8) mRNA, complete cds
          Length = 4401

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    tacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacaggata 62
            ||||| ||||| || ||||||||||||||  |||| || ||||| |||||| | ||||| 
Sbjct: 1666 tacaaacttcccgaaacaatctcaatgattgttcaaactaaggtatctcttaataggatt 1725

                    
Query: 63   gcatcttt 70
            ||||||||
Sbjct: 1726 gcatcttt 1733

to top

>gb|AY052368.1| Arabidopsis thaliana ATP-binding cassette transporter MRP6 mRNA,
            complete cds
          Length = 4401

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    tacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacaggata 62
            ||||| ||||| || ||||||||||||||  |||| || ||||| |||||| | ||||| 
Sbjct: 1666 tacaaacttcccgaaacaatctcaatgattgttcaaactaaggtatctcttaataggatt 1725

                    
Query: 63   gcatcttt 70
            ||||||||
Sbjct: 1726 gcatcttt 1733

to top

>dbj|AB162907.1| Thlaspi caerulescens TcMRP3 mRNA for multidrug resistance-associated
            protein, complete cds
          Length = 4602

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 231  gttgcagtctgtgggacggtaggctctggaaaatcaagcttgct 274
            |||||||| ||||| || || |||||||| ||||||||||||||
Sbjct: 2023 gttgcagtttgtggtactgttggctctggtaaatcaagcttgct 2066

to top

>dbj|AP000375.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MJG19
          Length = 62948

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 3     tacaaccttcctgacacaatctcaatgatgattcagaccaaggtgtctcttgacaggata 62
             ||||| ||||| || ||||||||||||||  |||| || ||||| |||||| | ||||| 
Sbjct: 15872 tacaaacttcccgaaacaatctcaatgattgttcaaactaaggtatctcttaataggatt 15813

                     
Query: 63    gcatcttt 70
             ||||||||
Sbjct: 15812 gcatcttt 15805

to top

>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17,
             complete sequence
          Length = 154824

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 402   gagatggactgtgagaatatgacaggg 428
             |||||||||||||||||| ||||||||
Sbjct: 25506 gagatggactgtgagaatgtgacaggg 25480

to top

>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
             complete sequence
          Length = 185139

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 402   gagatggactgtgagaatatgacaggg 428
             |||||||||||||||||| ||||||||
Sbjct: 19309 gagatggactgtgagaatgtgacaggg 19283

to top

>gb|AC167137.7| Mus musculus chromosome 1, clone RP23-408P8, complete sequence
          Length = 184702

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 268  gcttgctctcttgcattcttg 288
            |||||||||||||||||||||
Sbjct: 5283 gcttgctctcttgcattcttg 5263

to top

>gb|AC138399.18| Mus musculus chromosome 1, clone RP23-113N18, complete sequence
          Length = 219810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 268    gcttgctctcttgcattcttg 288
              |||||||||||||||||||||
Sbjct: 123274 gcttgctctcttgcattcttg 123294

to top

>ref|NM_142581.1| Drosophila melanogaster CG4562-RA (CG4562), mRNA
          Length = 4229

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 252  ggctctggaaaatcaagcttg 272
            |||||||||||||||||||||
Sbjct: 1581 ggctctggaaaatcaagcttg 1601

to top

>gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
             BACR02O09, complete sequence
          Length = 155751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 252   ggctctggaaaatcaagcttg 272
             |||||||||||||||||||||
Sbjct: 85525 ggctctggaaaatcaagcttg 85505

to top

>gb|BT021352.1| Drosophila melanogaster LP18549 full insert cDNA
          Length = 4538

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 252  ggctctggaaaatcaagcttg 272
            |||||||||||||||||||||
Sbjct: 1584 ggctctggaaaatcaagcttg 1604

to top

>gb|AE003728.3| Drosophila melanogaster chromosome 3R, section 66 of 118 of the
             complete sequence
          Length = 232094

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 252   ggctctggaaaatcaagcttg 272
             |||||||||||||||||||||
Sbjct: 32272 ggctctggaaaatcaagcttg 32252

to top

>ref|XM_465011.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3945

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                        
Query: 238  tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 297
            ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 1718 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 1777

                            
Query: 298  caaagctatcaggaga 313
            ||| | ||||||||||
Sbjct: 1778 caaggttatcaggaga 1793

to top

>gb|AC113989.6| Mus musculus chromosome 3, clone RP24-130I14, complete sequence
          Length = 159841

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cttgctctcttgcattcttg 288
              ||||||||||||||||||||
Sbjct: 158286 cttgctctcttgcattcttg 158267



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cttgctctcttgcattcttg 288
              ||||||||||||||||||||
Sbjct: 155667 cttgctctcttgcattcttg 155648

to top

>ref|XM_591649.2| PREDICTED: Bos taurus similar to
           coiled-coil-helix-coiled-coil-helix domain containing 4
           (predicted) (LOC513889), mRNA
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 agtggcaaaattcaggacaa 385
           ||||||||||||||||||||
Sbjct: 793 agtggcaaaattcaggacaa 774

to top

>gb|AC164405.4| Mus musculus chromosome 3, clone RP24-286C1, complete sequence
          Length = 159535

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cttgctctcttgcattcttg 288
             ||||||||||||||||||||
Sbjct: 27569 cttgctctcttgcattcttg 27550



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cttgctctcttgcattcttg 288
             ||||||||||||||||||||
Sbjct: 24950 cttgctctcttgcattcttg 24931

to top

>gb|AC125096.3| Mus musculus BAC clone RP24-181K19 from chromosome 18, complete
             sequence
          Length = 154941

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 183   ctgccaacgctgaaggacctgaat 206
             ||||||| ||||||||||||||||
Sbjct: 62774 ctgccaaagctgaaggacctgaat 62797

to top

>gb|BC112827.1| Bos taurus similar to coiled-coil-helix-coiled-coil-helix domain
           containing 4 (predicted), mRNA (cDNA clone MGC:137699
           IMAGE:8183408), complete cds
          Length = 1456

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 agtggcaaaattcaggacaa 385
           ||||||||||||||||||||
Sbjct: 832 agtggcaaaattcaggacaa 813

to top

>emb|AL354996.9| Human DNA sequence from clone RP11-478H12 on chromosome 13, complete
            sequence
          Length = 54981

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 253  gctctggaaaatcaagcttgctct 276
            ||||||||||||||| ||||||||
Sbjct: 1144 gctctggaaaatcaaccttgctct 1121

to top

>emb|AL162724.16| Human DNA sequence from clone RP11-121A14 on chromosome 9 Contains the 5'
              end of the NEK6 gene for NIMA (never in mitosis gene
              a)-related kinase 6, two novel genes and a CpG island,
              complete sequence
          Length = 122542

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    cctgggacggctcacctgag 182
              ||||||||||||||||||||
Sbjct: 121291 cctgggacggctcacctgag 121310

to top

>emb|AL079340.7|HSJ760G15 Human DNA sequence from clone RP4-760G15 on chromosome 11p13 Contains
             GSSs and a CpG Island, complete sequence
          Length = 114001

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    agcatctttcctatgccttg 81
             ||||||||||||||||||||
Sbjct: 86798 agcatctttcctatgccttg 86779

to top

>gb|AY129950.1| Homo sapiens cAMP-specific phosphodiesterase 8B (PDE8B) gene,
              alternatively spliced, complete cds
          Length = 216589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     agcatctttcctatgccttg 81
              ||||||||||||||||||||
Sbjct: 109024 agcatctttcctatgccttg 109005

to top

>gb|AC090007.8| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-156J8, complete
             sequence
          Length = 188802

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cttgctctcttgcattcttg 288
             ||||||||||||||||||||
Sbjct: 34965 cttgctctcttgcattcttg 34946

to top

>gb|AC022422.5| Homo sapiens chromosome 5 clone CTD-2199L4, complete sequence
          Length = 245697

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    agcatctttcctatgccttg 81
             ||||||||||||||||||||
Sbjct: 66177 agcatctttcctatgccttg 66158

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                            
Query: 238      tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 297
                ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 10912350 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 10912291

                                
Query: 298      caaagctatcaggaga 313
                ||| | ||||||||||
Sbjct: 10912290 caaggttatcaggaga 10912275

to top

>gb|AC129572.6| Mus musculus chromosome 5, clone RP23-452L7, complete sequence
          Length = 178011

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   cttgctctcttgcattcttg 288
             ||||||||||||||||||||
Sbjct: 21395 cttgctctcttgcattcttg 21414

to top

>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                          
Query: 238    tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 297
              ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 118549 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 118490

                              
Query: 298    caaagctatcaggaga 313
              ||| | ||||||||||
Sbjct: 118489 caaggttatcaggaga 118474

to top

>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence
          Length = 215671

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  cttgctctcttgcattcttg 288
            ||||||||||||||||||||
Sbjct: 8309 cttgctctcttgcattcttg 8290

to top

>emb|AJ535078.1|OSA535078 Oryza sativa (japonica cultivar-group) mrp4 gene for MRP-like ABC
            transporter, exons 1-12
          Length = 7960

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                        
Query: 238  tctgtgggacggtaggctctggaaaatcaagcttgctctcttgcattcttggtgaggtgc 297
            ||||||| || || || |||||||||||||| ||| | || ||||| || |||||| | |
Sbjct: 3139 tctgtggaactgttggatctggaaaatcaagtttgttgtcatgcatactcggtgagatac 3198

                            
Query: 298  caaagctatcaggaga 313
            ||| | ||||||||||
Sbjct: 3199 caaggttatcaggaga 3214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,411,219
Number of Sequences: 3902068
Number of extensions: 3411219
Number of successful extensions: 58836
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58702
Number of HSP's gapped (non-prelim): 124
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result