>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of|
           PAS protein 6) (MOP6)
          Length = 925

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 21  PLSHGYTVALQTLIILAACHEHSPPCCFVKRLDWCHL 131
           PLSHG TV  Q + ++   H   PP     R+D CH+
Sbjct: 302 PLSHGRTVPSQIMGLVVVAHALPPPTINEVRID-CHM 337

>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein|
          Length = 1723

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -3

Query: 376 WN-----PEHLSKFHQEEKSKENPSPPQPNCAGA 290
           WN     P   +K HQ+++  + P PPQP  +G+
Sbjct: 806 WNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGS 839

>RAB3C_HUMAN (Q96E17) Ras-related protein Rab-3C|
          Length = 227

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 346 QEEKSKENPSPPQPNCA 296
           Q  + KE P PPQPNCA
Sbjct: 210 QNTRLKETPPPPQPNCA 226

>SULF1_DROME (Q9VEX0) Extracellular sulfatase SULF-1 homolog precursor (EC|
           3.1.6.-) (DmSulf-1)
          Length = 1114

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 157 IYSSNATRTK*HQSSRFTKQQGGECSWQAARMMRVCSATVYPWERGWR 14
           +++SN++     +  ++TK  G  C   A      CS  +Y  E+ WR
Sbjct: 709 LHASNSSGNSYERGEKYTKSGGHRCFVDATTAKVNCSNVIYDDEKTWR 756

>IE0_NPVAC (P41710) Immediate-early protein IE-0 (Immediate early 0 protein)|
           (Immediate early transactivator 0)
          Length = 261

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 282 LNTDESFLEPKRTRESA--NQCCIYRW 208
           ++TDE FL+PK   E A  N CC+  W
Sbjct: 218 ISTDERFLKPKECCEYAICNACCVNMW 244

>BIOH_XYLFT (Q87DT3) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 255

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 57  LIILAACHEHSPPCCFVKRLDWCHLVRVALEE*MSTSARQQYRTT 191
           LI+LAA        CFV+R DW H V V++    +   +Q Y  T
Sbjct: 97  LIMLAATP------CFVRREDWPHAVEVSILTQFAQDLKQNYTET 135

>BIOH_XYLFA (Q9PDM3) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 255

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 57  LIILAACHEHSPPCCFVKRLDWCHLVRVALEE*MSTSARQQYRTT 191
           LI+LAA        CFV+R DW H V V++    +   +Q Y  T
Sbjct: 97  LIMLAATP------CFVRREDWPHAVEVSIFTQFAEDLKQNYTET 135

>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 388 SATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPI 281
           S T+  P+  + F +EE+ +  P+PP P+ + A P+
Sbjct: 411 SGTEPEPKPYNPFEEEEEEEGEPAPPVPSPSLAPPV 446

>TWHH_BRARE (Q90419) Tiggy-winkle hedgehog protein precursor (TWHH) (Sonic|
           hedgehog B protein) (SHHB) [Contains: Tiggy-winkle
           hedgehog protein N-product; Tiggy-winkle hedgehog
           protein C-product]
          Length = 416

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 239 KAPTSVASTGGFCLPGSGSVLL 174
           KA  SVA+  G C PGSG+V L
Sbjct: 189 KAENSVAAKSGGCFPGSGTVTL 210

>RAB3C_RAT (P62824) Ras-related protein Rab-3C|
          Length = 227

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 346 QEEKSKENPSPPQPNC 299
           Q  + KE P PPQPNC
Sbjct: 210 QSTRLKETPPPPQPNC 225

>RAB3C_MOUSE (P62823) Ras-related protein Rab-3C|
          Length = 227

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 346 QEEKSKENPSPPQPNC 299
           Q  + KE P PPQPNC
Sbjct: 210 QSTRLKETPPPPQPNC 225

>HMSH_DROME (Q03372) Muscle segmentation homeobox (Protein drop) (Protein msh)|
          Length = 515

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 17/71 (23%)
 Frame = -2

Query: 251 NALEKAPTSVASTGGFCLPGSGSVLLSSTRAHLLLQCDAHQM-----------------T 123
           N    +P+  A       P S S LL + + HLL Q   HQ                   
Sbjct: 60  NLTNLSPSHPAGLNALASPTSPSALLLAHQQHLLQQHQQHQQQQQQQQQAAALQLAAVHP 119

Query: 122 PVQSLHKTTRR 90
           P   LHKTT R
Sbjct: 120 PAHHLHKTTSR 130

>ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein)
          Length = 1960

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = -3

Query: 379 DWNPEHLSKFHQEEKSKENPSP------PQPNCAGANPIEHR 272
           DWNPE L     E   KEN +P      P P  +  +   HR
Sbjct: 461 DWNPEILPSRRNESNRKENETPRRRSHSPSPRHSRRSSSGHR 502

>PAHO_RAT (P06303) Pancreatic prohormone precursor (Pancreatic polypeptide)|
           (PP) [Contains: Pancreatic hormone; C-terminal peptide]
          Length = 98

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 172 DSSTEPLPGRQKPPVDATLVGAFSSA 249
           D  T  LPGRQ PP  + LVG    A
Sbjct: 69  DEDTAGLPGRQLPPCTSLLVGLMPCA 94

>ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein) (Cutaneous T-cell
           lymphoma-associated antigen se33-1) (CTCL tumor antigen
           se33-1)
          Length = 1978

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = -3

Query: 379 DWNPEHLSKFHQEEKSKENPSP------PQPNCAGANPIEHR 272
           DWNPE L     E   KEN +P      P P  +  +   HR
Sbjct: 463 DWNPEILPSRRNEGNRKENETPRRRSHSPSPRRSRRSSSSHR 504

>ILVB_MYCTU (P0A622) Acetolactate synthase (EC 2.2.1.6) (Acetohydroxy-acid|
           synthase) (ALS)
          Length = 618

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 17  PTSLPRIHSSATDPHHPCCLPR--ALSSLLFCEA 112
           PT  P  HS+A +P HP   P+  AL  L   +A
Sbjct: 10  PTFKPEPHSAANEPKHPAARPKHVALQQLTGAQA 43

>ILVB_MYCBO (P0A623) Acetolactate synthase (EC 2.2.1.6) (Acetohydroxy-acid|
           synthase) (ALS)
          Length = 618

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 17  PTSLPRIHSSATDPHHPCCLPR--ALSSLLFCEA 112
           PT  P  HS+A +P HP   P+  AL  L   +A
Sbjct: 10  PTFKPEPHSAANEPKHPAARPKHVALQQLTGAQA 43

>LRP12_MACFA (Q9BE74) Low-density lipoprotein receptor-related protein 12|
           (Fragment)
          Length = 701

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
 Frame = +1

Query: 172 DSSTEPLPGRQKPPVDATLV-----GAFSSAFRFQKTLICVQ*GSRLRSLVAADSGFLCS 336
           DSS E +  ++  P  AT         F    RF K   C      L   +  D    C 
Sbjct: 35  DSSDEEICAKEANPPTATAFQPCAYNQFQCLSRFTKVYTC------LAESLKCDGNIDCL 88

Query: 337 FLLGGISRDAPGSNQWLKSLSG 402
            L   I  D P   QWLK   G
Sbjct: 89  DLGDEIDCDVPTCGQWLKYFYG 110

>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of|
           PAS protein 6) (MOP6)
          Length = 933

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  LSHGYTVALQTLIILAACHEHSPPCCFVKRLDWCHL 131
           LSHG TV  Q + ++   H   PP     R+D CH+
Sbjct: 298 LSHGRTVPSQIMGLVVVAHALPPPTINEVRID-CHM 332

>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 400  PREISATD-WNPEHLSKFHQEEKSKENPSPPQPNCAGANP 284
            P +I A     PEHL K  Q++K +  P PP P    A P
Sbjct: 2804 PAQIKAVGKLTPEHLIKM-QKQKLQMPPQPPPPQAQSAPP 2842

>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive|
           sodium-(potassium)-chloride cotransporter 1) (NA-K-CL
           symporter) (NKCC)
          Length = 1191

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 175 SSTEPLPGRQKPPVDATLVGAFSSAFRFQKTLI 273
           S  EP  G+Q+PP  AT +   +S  RFQ  L+
Sbjct: 16  SGPEPGAGQQEPPPPATPLRPVASQSRFQVDLV 48

>PR1A_LYCES (Q08697) Pathogenesis-related protein 1A1 precursor (PR-1A1)|
          Length = 175

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 180 YRTTTRQAKATCRCNTGWRFL*CV*VPENSHLCSI 284
           +R + R   A  RCN+GW F+ C   P  +++ ++
Sbjct: 122 WRKSVRLGCARVRCNSGWVFITCNYDPPGNYIDNV 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,090,404
Number of Sequences: 219361
Number of extensions: 1196646
Number of successful extensions: 4036
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4033
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)