Clone Information

BLAST Search Result

Clone Name	bastl28g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_190202.1\| Oryza sativa (japonica cultivar-group), predic...	212	6e-52
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	212	6e-52
3	dbj\|AP003346.4\| Oryza sativa (japonica cultivar-group) genomic D...	212	6e-52
4	dbj\|AP003431.2\| Oryza sativa (japonica cultivar-group) genomic D...	212	6e-52
5	dbj\|AK106608.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	212	6e-52
6	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	9e-45
7	gb\|AC084818.3\| Oryza sativa (japonica cultivar-group) chromosome...	188	9e-45
8	gb\|AY178840.1\| Glycine max FGAM synthase (FGAM1) gene, complete cds	52	0.001
9	ref\|NM_106086.2\| Arabidopsis thaliana catalytic AT1G74260 mRNA, ...	44	0.33
10	ref\|XM_800287.1\| Trypanosoma cruzi strain CL Brener hypothetical...	44	0.33
11	ref\|XM_802124.1\| Trypanosoma cruzi strain CL Brener hypothetical...	44	0.33
12	gb\|AC020579.5\|AC020579 Arabidopsis thaliana chromosome 1 BAC F1O...	44	0.33
13	gb\|AC025721.3\| Caenorhabditis elegans cosmid Y48G8AL, complete s...	42	1.3
14	ref\|XM_415685.1\| PREDICTED: Gallus gallus similar to regulator o...	42	1.3
15	emb\|AL596129.27\| Mouse DNA sequence from clone RP23-294E23 on ch...	42	1.3
16	ref\|NM_058426.2\| Caenorhabditis elegans Y48G8AL.7 (Y48G8AL.7) mR...	42	1.3
17	gb\|AC121113.13\| Mus musculus chromosome 1, clone RP23-53N22, com...	42	1.3
18	gb\|AC154236.2\| Mus musculus BAC clone RP24-160E14 from chromosom...	40	5.1
19	ref\|XM_865051.1\| PREDICTED: Bos taurus similar to Complement com...	40	5.1
20	ref\|XM_590870.2\| PREDICTED: Bos taurus similar to Complement com...	40	5.1
21	gb\|BC112600.1\| Bos taurus complement component 8, beta polypepti...	40	5.1
22	ref\|XM_856026.1\| PREDICTED: Canis familiaris similar to tenascin...	40	5.1
23	ref\|XM_547454.2\| PREDICTED: Canis familiaris similar to tenascin...	40	5.1
24	emb\|AL035603.11\|HS179E13 Human DNA sequence from clone RP1-179E1...	40	5.1
25	emb\|BX569693.1\| Synechococcus sp. WH8102 complete genome; segmen...	40	5.1
26	emb\|CR545467.4\| Zebrafish DNA sequence from clone CH211-196P10 i...	40	5.1
27	gb\|AC079467.2\|AC079467 Homo sapiens chromosome 5 clone RP11-357D...	40	5.1
28	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	5.1
29	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	40	5.1
30	dbj\|AB030486.1\| TT virus gene for pORF2a, pORF2b, pORF1, complet...	40	5.1

>ref|NM_190202.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4065

 Score =  212 bits (107), Expect = 6e-52
 Identities = 273/327 (83%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                        
Query: 59   tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
            |||||||||||||| |||||  |||||||||  |||||||||||||||| || |||||||
Sbjct: 1841 tttcaatggctgtcattggtacaattgatggatgtggaaagattgttttgattgacagtg 1900

                                                                        
Query: 119  ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
            ||||| ||||||||||   | | | |||||||||||||||| | |||| ||  |||||||
Sbjct: 1901 ctgctatggagcatgccaagataaatggccttcctcctccaacccctgttgaggatcttg 1960

                                                                        
Query: 179  agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
            | |||||||||||| ||||||||||||| || ||||||||||| |||||||||||  |||
Sbjct: 1961 aacttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtgtctc 2020

                                                                        
Query: 239  gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
             | | || |||||||||||||| || || |   | ||| | ||||||| ||| ||| |||
Sbjct: 2021 tagtcagcgagcccttagacattgcccctggagtaacaatcatggatgctctgaagcgag 2080

                                                                        
Query: 299  tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
            ||||||  ||||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 2081 tattgagtcttccgtccatatgttctaagcgtttcttaaccacaaaagttgacaggtgtg 2140

                                       
Query: 359  tgacaggttcttgtggcacaacagcag 385
            ||||||| |||||| ||||||||||||
Sbjct: 2141 tgacagg-tcttgttgcacaacagcag 2166



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 5    tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
            ||||||||||||| ||||||| ||||||  |||||||||||
Sbjct: 1787 tggtgaagcctgagagcagaagcctgttagagtcactttgt 1827

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  212 bits (107), Expect = 6e-52
 Identities = 273/327 (83%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                            
Query: 59       tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
                |||||||||||||| |||||  |||||||||  |||||||||||||||| || |||||||
Sbjct: 38614978 tttcaatggctgtcattggtacaattgatggatgtggaaagattgttttgattgacagtg 38614919

                                                                            
Query: 119      ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
                ||||| ||||||||||   | | | |||||||||||||||| | |||| ||  |||||||
Sbjct: 38614918 ctgctatggagcatgccaagataaatggccttcctcctccaacccctgttgaggatcttg 38614859

                                                                            
Query: 179      agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
                | |||||||||||| ||||||||||||| || ||||||||||| |||||||||||  |||
Sbjct: 38614858 aacttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtgtctc 38614799

                                                                            
Query: 239      gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
                 | | || |||||||||||||| || || |   | ||| | ||||||| ||| ||| |||
Sbjct: 38614798 tagtcagcgagcccttagacattgcccctggagtaacaatcatggatgctctgaagcgag 38614739

                                                                            
Query: 299      tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
                ||||||  ||||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 38614738 tattgagtcttccgtccatatgttctaagcgtttcttaaccacaaaagttgacaggtgtg 38614679

                                           
Query: 359      tgacaggttcttgtggcacaacagcag 385
                ||||||| |||||| ||||||||||||
Sbjct: 38614678 tgacagg-tcttgttgcacaacagcag 38614653



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 5        tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
                ||||||||||||| ||||||| ||||||  |||||||||||
Sbjct: 38615032 tggtgaagcctgagagcagaagcctgttagagtcactttgt 38614992

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>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0434C04
          Length = 150064

 Score =  212 bits (107), Expect = 6e-52
 Identities = 273/327 (83%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                          
Query: 59     tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
              |||||||||||||| |||||  |||||||||  |||||||||||||||| || |||||||
Sbjct: 135659 tttcaatggctgtcattggtacaattgatggatgtggaaagattgttttgattgacagtg 135600

                                                                          
Query: 119    ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
              ||||| ||||||||||   | | | |||||||||||||||| | |||| ||  |||||||
Sbjct: 135599 ctgctatggagcatgccaagataaatggccttcctcctccaacccctgttgaggatcttg 135540

                                                                          
Query: 179    agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
              | |||||||||||| ||||||||||||| || ||||||||||| |||||||||||  |||
Sbjct: 135539 aacttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtgtctc 135480

                                                                          
Query: 239    gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
               | | || |||||||||||||| || || |   | ||| | ||||||| ||| ||| |||
Sbjct: 135479 tagtcagcgagcccttagacattgcccctggagtaacaatcatggatgctctgaagcgag 135420

                                                                          
Query: 299    tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
              ||||||  ||||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 135419 tattgagtcttccgtccatatgttctaagcgtttcttaaccacaaaagttgacaggtgtg 135360

                                         
Query: 359    tgacaggttcttgtggcacaacagcag 385
              ||||||| |||||| ||||||||||||
Sbjct: 135359 tgacagg-tcttgttgcacaacagcag 135334



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 5      tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
              ||||||||||||| ||||||| ||||||  |||||||||||
Sbjct: 135713 tggtgaagcctgagagcagaagcctgttagagtcactttgt 135673

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>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1099D03
          Length = 191022

 Score =  212 bits (107), Expect = 6e-52
 Identities = 273/327 (83%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                         
Query: 59    tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
             |||||||||||||| |||||  |||||||||  |||||||||||||||| || |||||||
Sbjct: 72951 tttcaatggctgtcattggtacaattgatggatgtggaaagattgttttgattgacagtg 72892

                                                                         
Query: 119   ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
             ||||| ||||||||||   | | | |||||||||||||||| | |||| ||  |||||||
Sbjct: 72891 ctgctatggagcatgccaagataaatggccttcctcctccaacccctgttgaggatcttg 72832

                                                                         
Query: 179   agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
             | |||||||||||| ||||||||||||| || ||||||||||| |||||||||||  |||
Sbjct: 72831 aacttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtgtctc 72772

                                                                         
Query: 239   gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
              | | || |||||||||||||| || || |   | ||| | ||||||| ||| ||| |||
Sbjct: 72771 tagtcagcgagcccttagacattgcccctggagtaacaatcatggatgctctgaagcgag 72712

                                                                         
Query: 299   tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
             ||||||  ||||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 72711 tattgagtcttccgtccatatgttctaagcgtttcttaaccacaaaagttgacaggtgtg 72652

                                        
Query: 359   tgacaggttcttgtggcacaacagcag 385
             ||||||| |||||| ||||||||||||
Sbjct: 72651 tgacagg-tcttgttgcacaacagcag 72626



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 5     tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
             ||||||||||||| ||||||| ||||||  |||||||||||
Sbjct: 73005 tggtgaagcctgagagcagaagcctgttagagtcactttgt 72965

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>dbj|AK106608.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E12, full
           insert sequence
          Length = 2772

 Score =  212 bits (107), Expect = 6e-52
 Identities = 273/327 (83%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 59  tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
           |||||||||||||| |||||  |||||||||  |||||||||||||||| || |||||||
Sbjct: 159 tttcaatggctgtcattggtacaattgatggatgtggaaagattgttttgattgacagtg 218

                                                                       
Query: 119 ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
           ||||| ||||||||||   | | | |||||||||||||||| | |||| ||  |||||||
Sbjct: 219 ctgctatggagcatgccaagataaatggccttcctcctccaacccctgttgaggatcttg 278

                                                                       
Query: 179 agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
           | |||||||||||| ||||||||||||| || ||||||||||| |||||||||||  |||
Sbjct: 279 aacttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtgtctc 338

                                                                       
Query: 239 gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
            | | || |||||||||||||| || || |   | ||| | ||||||| ||| ||| |||
Sbjct: 339 tagtcagcgagcccttagacattgcccctggagtaacaatcatggatgctctgaagcgag 398

                                                                       
Query: 299 tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
           ||||||  ||||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||
Sbjct: 399 tattgagtcttccgtccatatgttctaagcgtttcttaaccacaaaagttgacaggtgtg 458

                                      
Query: 359 tgacaggttcttgtggcacaacagcag 385
           ||||||| |||||| ||||||||||||
Sbjct: 459 tgacagg-tcttgttgcacaacagcag 484



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 5   tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
           ||||||||||||| ||||||| ||||||  |||||||||||
Sbjct: 105 tggtgaagcctgagagcagaagcctgttagagtcactttgt 145

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  188 bits (95), Expect = 9e-45
 Identities = 270/327 (82%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                          
Query: 59     tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
              |||||||||||||| ||||   |||  ||||  |||||||||||||||| || |||||||
Sbjct: 222231 tttcaatggctgtcattgggacaatcaatggatgtggaaagattgttttgattgacagtg 222290

                                                                          
Query: 119    ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
              ||||||||||||||||   ||| | |||||||||||||||| | |||| ||  ||||| |
Sbjct: 222291 ctgctgtggagcatgcgaagttaaatggccttcctcctccaacccctgttgaggatctcg 222350

                                                                          
Query: 179    agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
              |||||||||||||| ||||||||||||| || ||||||||||| |||||||||||  || 
Sbjct: 222351 agcttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtctctg 222410

                                                                          
Query: 239    gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
               | | |||||||||||||| || || |  |   | ||| | ||||||| ||| ||| |||
Sbjct: 222411 tagtcagtgagcccttagatattgcccgtggagtaacaatcatggatgctctgaagcgag 222470

                                                                          
Query: 299    tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
              ||||||  ||||| || ||||| || ||||||||||| ||||| || |||||||| ||||
Sbjct: 222471 tattgagtcttccatctgtatgctctaagcgtttcttaaccacaaaagttgacaggtgtg 222530

                                         
Query: 359    tgacaggttcttgtggcacaacagcag 385
              ||||||| |||||| ||||||||||||
Sbjct: 222531 tgacagg-tcttgttgcacaacagcag 222556



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 5      tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
              ||||||||||||| ||||||| ||| ||  |||||||||||
Sbjct: 222177 tggtgaagcctgagagcagaagccttttagagtcactttgt 222217

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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
              complete sequence
          Length = 160603

 Score =  188 bits (95), Expect = 9e-45
 Identities = 270/327 (82%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                          
Query: 59     tttcaatggctgtccttggtgaaattgatggtagtggaaagattgttttaatagacagtg 118
              |||||||||||||| ||||   |||  ||||  |||||||||||||||| || |||||||
Sbjct: 104415 tttcaatggctgtcattgggacaatcaatggatgtggaaagattgttttgattgacagtg 104474

                                                                          
Query: 119    ctgctgtggagcatgcattgttgagtggccttcctcctccaccgcctgctgttgatcttg 178
              ||||||||||||||||   ||| | |||||||||||||||| | |||| ||  ||||| |
Sbjct: 104475 ctgctgtggagcatgcgaagttaaatggccttcctcctccaacccctgttgaggatctcg 104534

                                                                          
Query: 179    agcttgaaaaggttttaggagatatgcctcagaagacctttgatttcaagcgagttcctc 238
              |||||||||||||| ||||||||||||| || ||||||||||| |||||||||||  || 
Sbjct: 104535 agcttgaaaaggttctaggagatatgccccaaaagacctttgaattcaagcgagtctctg 104594

                                                                          
Query: 239    gattgagtgagcccttagacatagcacccgagattacactgatggatgttcttaagagag 298
               | | |||||||||||||| || || |  |   | ||| | ||||||| ||| ||| |||
Sbjct: 104595 tagtcagtgagcccttagatattgcccgtggagtaacaatcatggatgctctgaagcgag 104654

                                                                          
Query: 299    tattgaagcttccctcagtatgttcaaagcgtttcttgaccactaaggttgacagatgtg 358
              ||||||  ||||| || ||||| || ||||||||||| ||||| || |||||||| ||||
Sbjct: 104655 tattgagtcttccatctgtatgctctaagcgtttcttaaccacaaaagttgacaggtgtg 104714

                                         
Query: 359    tgacaggttcttgtggcacaacagcag 385
              ||||||| |||||| ||||||||||||
Sbjct: 104715 tgacagg-tcttgttgcacaacagcag 104740



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 5      tggtgaagcctgatagcagaaacctgttgcagtcactttgt 45
              ||||||||||||| ||||||| ||| ||  |||||||||||
Sbjct: 104361 tggtgaagcctgagagcagaagccttttagagtcactttgt 104401

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>gb|AY178840.1| Glycine max FGAM synthase (FGAM1) gene, complete cds
          Length = 5684

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 57/66 (86%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                        
Query: 319  tgttcaaagcgtttcttgaccactaaggttgacagatgtgtgacaggttcttgtggcaca 378
            ||||||||||| |||||||| || || |||||||| ||||| || || ||| ||||||||
Sbjct: 4525 tgttcaaagcgcttcttgacaacaaaagttgacaggtgtgttactgg-tctagtggcaca 4583

                  
Query: 379  acagca 384
            ||||||
Sbjct: 4584 acagca 4589

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>ref|NM_106086.2| Arabidopsis thaliana catalytic AT1G74260 mRNA, complete cds
          Length = 4336

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 321  ttcaaagcgtttcttgaccactaaggttgacagatgtgtgacaggt 366
            ||||||||| |||||||| || || || || |||||||||||||||
Sbjct: 2205 ttcaaagcggttcttgacaaccaaagtggatagatgtgtgacaggt 2250

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>ref|XM_800287.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053507569.10) partial mRNA
          Length = 2457

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 148 cttcctcctccaccgcctgctg 169
           ||||||||||||||||||||||
Sbjct: 286 cttcctcctccaccgcctgctg 265

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>ref|XM_802124.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053504423.30) partial mRNA
          Length = 2466

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 148 cttcctcctccaccgcctgctg 169
           ||||||||||||||||||||||
Sbjct: 286 cttcctcctccaccgcctgctg 265

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>gb|AC020579.5|AC020579 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete
             sequence
          Length = 50821

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 321   ttcaaagcgtttcttgaccactaaggttgacagatgtgtgacaggt 366
             ||||||||| |||||||| || || || || |||||||||||||||
Sbjct: 27895 ttcaaagcggttcttgacaaccaaagtggatagatgtgtgacaggt 27940

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>gb|AC025721.3| Caenorhabditis elegans cosmid Y48G8AL, complete sequence
          Length = 126020

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   ctcagaagacctttgatttca 226
             |||||||||||||||||||||
Sbjct: 25187 ctcagaagacctttgatttca 25167

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>ref|XM_415685.1| PREDICTED: Gallus gallus similar to regulator of G protein signaling
            RGS9-1 (LOC417433), mRNA
          Length = 5166

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 359  tgacaggttcttgtggcacaacagc 383
            |||||| ||||||||||||||||||
Sbjct: 2110 tgacagtttcttgtggcacaacagc 2086

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>emb|AL596129.27| Mouse DNA sequence from clone RP23-294E23 on chromosome 11 Contains the
              3' end of the Myh3 gene for embryonic skeletal muscle
              myosin heavy polypeptide 3, four novel genes
              (2310065F04Rik), the Myh2 gene for adult skeletal muscle
              myosin heavy polypeptide 2, the Myh1 gene for adult
              skeletal muscle myosin heavy polypeptide 1, the Myh4 gene
              for skeletal muscle  myosin heavy polypeptide 4 and the
              Myh8 gene for perinatal skeletal muscle myosin heavy
              polypeptide 8 (4832426G23Rik), complete sequence
          Length = 221384

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     aaagattgttttaatagacag 116
              |||||||||||||||||||||
Sbjct: 121219 aaagattgttttaatagacag 121239

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>ref|NM_058426.2| Caenorhabditis elegans Y48G8AL.7 (Y48G8AL.7) mRNA, complete cds
          Length = 723

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 206 ctcagaagacctttgatttca 226
           |||||||||||||||||||||
Sbjct: 127 ctcagaagacctttgatttca 107

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>gb|AC121113.13| Mus musculus chromosome 1, clone RP23-53N22, complete sequence
          Length = 210381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   agattacactgatggatgttc 289
             |||||||||||||||||||||
Sbjct: 51955 agattacactgatggatgttc 51935

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>gb|AC154236.2| Mus musculus BAC clone RP24-160E14 from chromosome 17, complete
             sequence
          Length = 162390

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aatagacagtgctgctgtgg 127
             ||||||||||||||||||||
Sbjct: 16756 aatagacagtgctgctgtgg 16775

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>ref|XM_865051.1| PREDICTED: Bos taurus similar to Complement component C8 beta chain
            precursor (Complement component 8 beta subunit),
            transcript variant 2 (LOC513217), mRNA
          Length = 1969

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  tggatgttcttaagagagta 300
            ||||||||||||||||||||
Sbjct: 1155 tggatgttcttaagagagta 1136

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>ref|XM_590870.2| PREDICTED: Bos taurus similar to Complement component C8 beta chain
           precursor (Complement component 8 beta subunit),
           transcript variant 1 (LOC513217), mRNA
          Length = 1771

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 tggatgttcttaagagagta 300
           ||||||||||||||||||||
Sbjct: 957 tggatgttcttaagagagta 938

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>gb|BC112600.1| Bos taurus complement component 8, beta polypeptide, mRNA (cDNA clone
            MGC:137114 IMAGE:8021016), complete cds
          Length = 1330

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  tggatgttcttaagagagta 300
            ||||||||||||||||||||
Sbjct: 1195 tggatgttcttaagagagta 1176

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>ref|XM_856026.1| PREDICTED: Canis familiaris similar to tenascin R (restrictin,
           janusin), transcript variant 2 (LOC490334), mRNA
          Length = 4095

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ccttcctcctccaccgcctg 166
           ||||||||||||||||||||
Sbjct: 146 ccttcctcctccaccgcctg 127

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>ref|XM_547454.2| PREDICTED: Canis familiaris similar to tenascin R (restrictin,
           janusin), transcript variant 1 (LOC490334), mRNA
          Length = 4077

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ccttcctcctccaccgcctg 166
           ||||||||||||||||||||
Sbjct: 146 ccttcctcctccaccgcctg 127

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>emb|AL035603.11|HS179E13 Human DNA sequence from clone RP1-179E13 on chromosome 6q22.1-22.33
             Contains ribosomal protein S4, X-linked (cell cycle gene
             2, single-copy abundant mRNA, ribosomal protein S4X
             variant, 40S ribosomal protein S4, X variant)
             (RPS4X)(CCG2, SCAR, SCR10, DXS306) pseudogene, complete
             sequence
          Length = 138443

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    gattgttttaatagacagtg 118
             ||||||||||||||||||||
Sbjct: 90106 gattgttttaatagacagtg 90087

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>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7
          Length = 349213

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    tccaccgcctgctgttgatc 175
              ||||||||||||||||||||
Sbjct: 289726 tccaccgcctgctgttgatc 289707

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>emb|CR545467.4| Zebrafish DNA sequence from clone CH211-196P10 in linkage group 16,
             complete sequence
          Length = 161708

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gattgttttaatagacagtg 118
             ||||||||||||||||||||
Sbjct: 94462 gattgttttaatagacagtg 94481

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>gb|AC079467.2|AC079467 Homo sapiens chromosome 5 clone RP11-357D18, complete sequence
          Length = 141591

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   agaagacctttgatttcaag 228
             ||||||||||||||||||||
Sbjct: 84862 agaagacctttgatttcaag 84881

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 147     ccttcctcctccaccgcctg 166
               ||||||||||||||||||||
Sbjct: 1614590 ccttcctcctccaccgcctg 1614571

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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 147     ccttcctcctccaccgcctg 166
               ||||||||||||||||||||
Sbjct: 1290926 ccttcctcctccaccgcctg 1290907

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>dbj|AB030486.1| TT virus gene for pORF2a, pORF2b, pORF1, complete cds,
           clone:JaCHC2c
          Length = 2848

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 tcctcctccaccgcctgctg 169
           ||||||||||||||||||||
Sbjct: 599 tcctcctccaccgcctgctg 580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,394,090
Number of Sequences: 3902068
Number of extensions: 3394090
Number of successful extensions: 66592
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66344
Number of HSP's gapped (non-prelim): 233
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result