>TRPA_VIBPA (P22095) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 161 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 289
           APPTA D T++ + E+ GG+    S A +  A  ++NM  +   +KL
Sbjct: 154 APPTASDETLKQVSELGGGYTYLLSRAGVTGAETKANMPVDHMLEKL 200

>TENA_BACSU (P25052) Thiaminase-2 (EC 3.5.99.2) (Thiaminase II)|
           (Transcriptional activator tenA)
          Length = 236

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 143 DTKAARAPPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKR 322
           + KA +  PTA   T    + V+ G+  A+IL AL        E  +KLL+ DP H + +
Sbjct: 99  ERKAFKPSPTAYSYTSHMYRSVLSGNF-AEILAALLPCYWLYYEVGEKLLHCDPGHPIYQ 157

Query: 323 K 325
           K
Sbjct: 158 K 158

>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister|
           chromatids)
          Length = 1741

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 164 PPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQK 286
           PPTA DS V      VGG S  D  +  +  +++PNE  ++
Sbjct: 405 PPTAADS-VDGSSAAVGGASAGDSFEERKSQSLEPNEDEEE 444

>TRPA_VIBVY (Q7MM57) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 161 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 289
           APPTA D T++ + ++ GG+    S A +  A  ++NM   +   KL
Sbjct: 154 APPTASDETLKQVSQLGGGYTYLLSRAGVTGAETKANMPVGDMLAKL 200

>TRPA_VIBVU (Q8D8B1) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 161 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 289
           APPTA D T++ + ++ GG+    S A +  A  ++NM   +   KL
Sbjct: 154 APPTASDETLKQVSQLGGGYTYLLSRAGVTGAETKANMPVGDMLAKL 200

>TRPA_VIBME (Q9RCE7) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 161 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 289
           APPTA D T+QS+ E+  G+    S + +  A  ++NM  +   ++L
Sbjct: 152 APPTASDETLQSVAELGSGYTYLLSRSGVTGAETKANMPVHALLERL 198

>GLYA_RICCN (Q92GH7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 420

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 185 TVQSIKE---VVGGHSEADILDALRESNMDPNETAQKLLNQ 298
           T +  KE   V+ GH  ADILD L+ +N D +   QK+LN+
Sbjct: 369 TTRGFKEKDFVLVGHMVADILDGLK-NNEDNSALEQKVLNE 408

>ACON2_ECOLI (P36683) Aconitate hydratase 2 (EC 4.2.1.3) (Citrate hydro-lyase 2)|
           (Aconitase 2)
          Length = 865

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 155 ARAPPTAIDSTVQSIKEVVGGHSEADILDALRESNMDP---NETAQKLLNQDPFHEVKRK 325
           A++P    +  ++ +  + GG++   ++DAL ++ + P      +  LL  D F++V+ K
Sbjct: 76  AKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALSHTLLMFDNFYDVEEK 135

Query: 326 RDKKRESAVQ 355
                E A Q
Sbjct: 136 AKAGNEYAKQ 145

>DKC1_ARATH (Q9LD90) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Nucleolar protein NAP57 homolog) (Nopp-140-associated
           protein of 57 kDa homolog) (AtNAP57)
          Length = 565

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 167 PTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDKKRE 343
           P  + +     KEV G  +E  +  + ++   D  E  ++    +   E K+K+DKK E
Sbjct: 451 PAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEK-KEKKKKKDKKEE 508

>HAS1_DEBHA (Q6BH93) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)|
          Length = 568

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 164 PPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDKKRE 343
           P   ++S  +  +E     SE+D    + E + D +E A+ L   D   + + K+DKK+E
Sbjct: 20  PSKKVESRKREHEEESSDSSESDNEKLVEELDDDFDEVAELL--GDDIKDPEAKKDKKKE 77

Query: 344 SAVQ 355
             +Q
Sbjct: 78  KKIQ 81

>KPC1_LYTPI (Q25378) Protein kinase C (EC 2.7.11.13)|
          Length = 658

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 203 EVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDKKRES 346
           EV+G   +  + +A     MDPN  +      DPF ++K   D+KRE+
Sbjct: 158 EVIGNKLQVTVAEAKNLIPMDPNGLS------DPFVKLKLIPDQKRET 199

>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 167 PTAIDSTVQSIKEVVGGHSEADILDALRESNM 262
           P A D  ++SI E + G+S ADI +  R+++M
Sbjct: 424 PLADDIDLKSIAEKMDGYSGADITNVCRDASM 455

>GLYA_RICFE (Q4UK96) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 421

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 185 TVQSIKE---VVGGHSEADILDALRESNMDPNETAQKLLNQ 298
           T +  KE   V+ GH  ADILD L+ +N D  +  QK+L +
Sbjct: 369 TTRGFKEKDFVLVGHMVADILDGLK-NNEDNGKAEQKVLTE 408

>TRPA_PHOPR (Q6LPA3) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 269

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 161 APPTAIDSTVQSIKEVVGGHS 223
           APP A D T++S+ E+ GG++
Sbjct: 154 APPNATDETLKSVSELGGGYT 174

>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 2 (EC
           3.6.1.-) (SMARCA3-like protein 2)
          Length = 1029

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 DSTVQSIKEVVGG-HSEADILDALRESNMDPNETAQKLLNQDPF 307
           D  V +++ VVG  +S+ DI+ AL  +N DP      + +   F
Sbjct: 7   DDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSF 50

>SKI_HUMAN (P12755) Ski oncogene (C-ski)|
          Length = 728

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 155 ARAPPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDK 334
           ARA P+A+           G  +E + L    E  +D  E  +K L     HEV + R K
Sbjct: 518 ARALPSAVPDAAAPADAPSGLEAELEHLRQALEGGLDTKEAKEKFL-----HEVVKMRVK 572

Query: 335 KRE 343
           + E
Sbjct: 573 QEE 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,379,641
Number of Sequences: 219361
Number of extensions: 293806
Number of successful extensions: 1463
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)