Clone Name | bastl28f08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 16 taggacagcatgtgttcttgacg 38 ||||||||||||||||||||||| Sbjct: 3531290 taggacagcatgtgttcttgacg 3531268
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 16 taggacagcatgtgttcttgacg 38 ||||||||||||||||||||||| Sbjct: 607 taggacagcatgtgttcttgacg 585
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 16 taggacagcatgtgttcttgacg 38 ||||||||||||||||||||||| Sbjct: 69240 taggacagcatgtgttcttgacg 69218
>dbj|AK120764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007H22, full insert sequence Length = 2832 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 16 taggacagcatgtgttcttgacg 38 ||||||||||||||||||||||| Sbjct: 85 taggacagcatgtgttcttgacg 107
>gb|AC139218.10| Mus musculus chromosome 15, clone RP23-456O10, complete sequence Length = 163749 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 225 gtggatgataatcatccaaattttct 250 ||||||||||||||||| |||||||| Sbjct: 51621 gtggatgataatcatcctaattttct 51596
>gb|AC102661.7| Mus musculus chromosome 3, clone RP23-114K16, complete sequence Length = 176493 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 379 tgcaagcagttcagcagtggac 400 |||||||||||||||||||||| Sbjct: 21883 tgcaagcagttcagcagtggac 21862
>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence Length = 185876 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 379 tgcaagcagttcagcagtggac 400 |||||||||||||||||||||| Sbjct: 32636 tgcaagcagttcagcagtggac 32657
>gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, complete sequence Length = 204574 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 225 gtggatgataatcatccaaattttct 250 ||||||||||||||||| |||||||| Sbjct: 195599 gtggatgataatcatcctaattttct 195574
>gb|AC004454.1| Homo sapiens PAC clone RP5-988L12 from 7, complete sequence Length = 80514 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 aaactgtaattataccagacttttt 297 |||||||||| |||||||||||||| Sbjct: 8798 aaactgtaatgataccagacttttt 8822
>gb|AC093152.2| Homo sapiens chromosome 1 clone RP11-455P21, complete sequence Length = 151449 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ctttttctttagaattgagataaat 316 |||||||||||||| |||||||||| Sbjct: 43548 ctttttctttagaactgagataaat 43524
>gb|AC147291.3| Pan troglodytes BAC clone RP43-74J18 from chromosome 7, complete sequence Length = 219031 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 aaactgtaattataccagacttttt 297 |||||||||| |||||||||||||| Sbjct: 74602 aaactgtaatgataccagacttttt 74626
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 920542 taattataccagtctttttcttta 920519
>gb|U42580.4|PBU42580 Paramecium bursaria Chlorella virus 1, complete genome Length = 330743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctttttctttagaattgaga 311 |||||||||||||||||||| Sbjct: 248806 ctttttctttagaattgaga 248825
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 925140 taattataccagtctttttcttta 925117
>gb|AE006562.1| Streptococcus pyogenes M1 GAS, section 91 of 167 of the complete genome Length = 10324 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 2605 taattataccagtctttttcttta 2582
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 1026617 taattataccagtctttttcttta 1026594
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 952983 taattataccagtctttttcttta 952960
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 995455 taattataccagtctttttcttta 995432
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 992219 taattataccagtctttttcttta 992196
>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence Length = 172683 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 aaactgtaattataccagactttt 296 |||||||||||| ||||||||||| Sbjct: 15272 aaactgtaattaaaccagactttt 15295
>gb|AF252827.5| Homo sapiens chromosome 8 clone RP11-166E20 map q24.13, complete sequence Length = 165347 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tagttctccttgcagagata 272 |||||||||||||||||||| Sbjct: 42027 tagttctccttgcagagata 42046
>gb|AY386697.1| Oryctolagus cuniculus clone 225P18, complete sequence Length = 139446 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tcccatttggacatggaata 116 |||||||||||||||||||| Sbjct: 48010 tcccatttggacatggaata 47991
>gb|AY386694.1| Oryctolagus cuniculus clone 38A2, complete sequence Length = 128059 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tcccatttggacatggaata 116 |||||||||||||||||||| Sbjct: 103886 tcccatttggacatggaata 103867 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tcccatttggacatggaata 116 |||||||||||||||||||| Sbjct: 45912 tcccatttggacatggaata 45893 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tcccatttggacatggaata 116 |||||||||||||||||||| Sbjct: 704 tcccatttggacatggaata 685
>ref|XM_447216.1| Candida glabrata CBS138, CAGL0H09614g partial mRNA Length = 711 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttaggatagcagtcttagag 223 |||||||||||||||||||| Sbjct: 28 ttaggatagcagtcttagag 9
>gb|AC146141.2| Pan troglodytes BAC clone RP43-3A23 from 7, complete sequence Length = 182547 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tagttctccttgcagagata 272 |||||||||||||||||||| Sbjct: 164577 tagttctccttgcagagata 164596
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 922997 taattataccagtctttttcttta 922974
>emb|AL357127.17| Human DNA sequence from clone RP11-282I1 on chromosome 10 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 124343 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tagttctccttgcagagata 272 |||||||||||||||||||| Sbjct: 26352 tagttctccttgcagagata 26333
>emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chromosome 10q25.2-26.2 Contains the 5' end of a novel gene, the 5' end of the SAC2 gene for Sac domain-containing inositol phosphatase 2 and three CpG islands, complete sequence Length = 114244 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ctttttctttagaattgaga 311 |||||||||||||||||||| Sbjct: 17528 ctttttctttagaattgaga 17509
>emb|AL049550.5|HSDJ90L14 Human DNA sequence from clone RP1-90L14 on chromosome 6q14.1-15 Contains the 3' end of a novel gene, complete sequence Length = 104594 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tagcagtcttagagagtgga 229 |||||||||||||||||||| Sbjct: 25988 tagcagtcttagagagtgga 25969
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ttaggatagcagtcttagag 223 |||||||||||||||||||| Sbjct: 939969 ttaggatagcagtcttagag 939988
>emb|CR735124.10| Zebrafish DNA sequence from clone CH211-186G12 in linkage group 21, complete sequence Length = 149968 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aaaactgtaattataccaga 291 |||||||||||||||||||| Sbjct: 80153 aaaactgtaattataccaga 80134
>gb|AC100871.2| Homo sapiens chromosome 8, clone RP11-959I15, complete sequence Length = 215314 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tagttctccttgcagagata 272 |||||||||||||||||||| Sbjct: 176501 tagttctccttgcagagata 176482
>gb|AE010042.1| Streptococcus pyogenes strain MGAS8232, section 90 of 173 of the complete genome Length = 10324 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 2605 taattataccagtctttttcttta 2582
>gb|AC009522.11| Homo sapiens 12 BAC RP11-591N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128666 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ctagttctccttgcagagat 271 |||||||||||||||||||| Sbjct: 96279 ctagttctccttgcagagat 96298
>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete sequence Length = 308703 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 agtgttgctgttgtgtaaaa 367 |||||||||||||||||||| Sbjct: 292847 agtgttgctgttgtgtaaaa 292866
>gb|AC023108.4| Homo sapiens BAC clone RP11-121I13 from 2, complete sequence Length = 173794 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tagttctccttgcagagata 272 |||||||||||||||||||| Sbjct: 77947 tagttctccttgcagagata 77966
>gb|AC079611.6| Homo sapiens BAC clone RP11-260J21 from 2, complete sequence Length = 180783 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tgttgtgtaaaatacatgtg 375 |||||||||||||||||||| Sbjct: 5819 tgttgtgtaaaatacatgtg 5800
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 914039 taattataccagtctttttcttta 914016
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 taattataccagactttttcttta 302 |||||||||||| ||||||||||| Sbjct: 1044559 taattataccagtctttttcttta 1044536
>emb|BX510368.7| Zebrafish DNA sequence from clone DKEY-190P19 in linkage group 20, complete sequence Length = 84687 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 aaatagtgttgctgttgtgt 363 |||||||||||||||||||| Sbjct: 51988 aaatagtgttgctgttgtgt 52007
>gb|AC005874.3|AC005874 citb_175_g_20, complete sequence Length = 177750 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ctttttctttagaattgaga 311 |||||||||||||||||||| Sbjct: 88662 ctttttctttagaattgaga 88643
>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20, complete sequence Length = 154604 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 aaatagtgttgctgttgtgt 363 |||||||||||||||||||| Sbjct: 93599 aaatagtgttgctgttgtgt 93580
>emb|AL161665.5|CNS01RH9 Human chromosome 14 DNA sequence BAC R-431H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ctctaataaaataattgggc 155 |||||||||||||||||||| Sbjct: 109552 ctctaataaaataattgggc 109571
>dbj|AP002961.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-2I22, complete sequence Length = 157903 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aactctaataaaataattgg 153 |||||||||||||||||||| Sbjct: 109096 aactctaataaaataattgg 109115
>gb|AC115699.9| Mus musculus chromosome 15, clone RP24-247B18, complete sequence Length = 169003 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 aaactgtaattataccagactttt 296 |||||||||||| ||||||||||| Sbjct: 43536 aaactgtaattaaaccagactttt 43513
>gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Contig902E_1999.01.14, complete sequence Length = 177747 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ctttttctttagaattgaga 311 |||||||||||||||||||| Sbjct: 88659 ctttttctttagaattgaga 88640
>emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23, complete sequence Length = 182212 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 aaaactgtaattataccaga 291 |||||||||||||||||||| Sbjct: 70628 aaaactgtaattataccaga 70647
>gb|AC124210.3| Homo sapiens chromosome 8 clone RP11-755E24 map q24.13, complete sequence Length = 138875 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tagttctccttgcagagata 272 |||||||||||||||||||| Sbjct: 39943 tagttctccttgcagagata 39962
>gb|AC157953.2| Gallus gallus BAC clone CH261-93C23 from chromosome unknown, complete sequence Length = 231813 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 agtgttgctgttgtgtaaaa 367 |||||||||||||||||||| Sbjct: 93339 agtgttgctgttgtgtaaaa 93358
>gb|M12180.1|RABIGHVD Rabbit Ig germline CL42.VH25 and CL.42VH34 genes, VHA3 allotype, 5' end Length = 4971 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tcccatttggacatggaata 116 |||||||||||||||||||| Sbjct: 2050 tcccatttggacatggaata 2031 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,449,892 Number of Sequences: 3902068 Number of extensions: 4449892 Number of successful extensions: 86150 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85947 Number of HSP's gapped (non-prelim): 203 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)