ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ004688.1| Oryza sativa (indica cultivar-group) putative LON3 protease mRNA, complete cds Length = 3133 Score = 264 bits (133), Expect = 2e-67 Identities = 327/393 (83%), Gaps = 9/393 (2%) Strand = Plus / Plus Query: 19 cccctcatgctgcgcgcggcggcggctgccgccactgccttcccggcgcggttcgccgcc 78 ||||||||||||||||| |||||||| |||||| | | |||||| |||||||||| ||| Sbjct: 118 cccctcatgctgcgcgccgcggcggccgccgccgccgtcttcccctcgcggttcgctgcc 177 Query: 79 gtgccggccggggcggcggcggaggagatgcggtcgccgctgctcagggttttcgggtcg 138 | |||||||| |||||||| |||||| | |||||||||||||||||||||| ||| || Sbjct: 178 gcgccggccgtggcggcggttgaggaggtcaggtcgccgctgctcagggttttgggggcg 237 Query: 139 ctgaggggcggccggagctcggttatggggaggcgggcgcgcttctgctccagcttctcc 198 || | ||||||||| |||| | |||||| |||||||||||||||||| || | || Sbjct: 238 ctccgaggcggccgggtctcgacgctcgggaggagggcgcgcttctgctccaactccgcc 297 Query: 199 gggagcgactccgaggccgcggcggcggccgcagcggatgcgaaggccgaggatgcggtc 258 ||||||||||||||||| |||||||| ||| || ||||||||||||||||| Sbjct: 298 gggagcgactccgaggcggcggcggc---------ggaagctaaggccgaggatgcggtt 348 Query: 259 gtcgcggagggtgaggcggaaggcaaggcgtcctccgccatcgtctccaccaacccccgg 318 | ||||| || |||||||| ||||||||||| ||||||||||| ||||| || ||| Sbjct: 349 gctgcggaaggggaggcggacggcaaggcgtcttccgccatcgtgcccaccgtcctccgc 408 Query: 319 cccgaggatttcctctcggtcattgccctgcctcttccacaccgaccactctttccagga 378 || ||||| | |||||||||||| || |||||||| ||||| || ||||||||||| ||| Sbjct: 409 cctgaggactgcctctcggtcatagcactgcctctcccacatcgtccactctttcctgga 468 Query: 379 ttttatatgccgatctatgtaaaggacctaaag 411 |||||||||||||||||||||||||||| |||| Sbjct: 469 ttttatatgccgatctatgtaaaggaccaaaag 501
>ref|NM_185527.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2931 Score = 252 bits (127), Expect = 8e-64 Identities = 321/387 (82%), Gaps = 9/387 (2%) Strand = Plus / Plus Query: 25 atgctgcgcgcggcggcggctgccgccactgccttcccggcgcggttcgccgccgtgccg 84 ||||||||||| |||||||| |||||| | | |||||| |||||||||| |||| |||| Sbjct: 1 atgctgcgcgccgcggcggccgccgccgccgtcttcccctcgcggttcgctgccgcgccg 60 Query: 85 gccggggcggcggcggaggagatgcggtcgccgctgctcagggttttcgggtcgctgagg 144 |||| |||||||| |||||| | |||||||||||||||||||||| ||| |||| | Sbjct: 61 gccgtggcggcggttgaggaggtcaggtcgccgctgctcagggttttgggggcgctccga 120 Query: 145 ggcggccggagctcggttatggggaggcgggcgcgcttctgctccagcttctccgggagc 204 ||||||||| |||| | |||||| |||||||||||||||||| || | |||||||| Sbjct: 121 ggcggccgggtctcgacgctcgggaggagggcgcgcttctgctccaactccgccgggagc 180 Query: 205 gactccgaggccgcggcggcggccgcagcggatgcgaaggccgaggatgcggtcgtcgcg 264 ||||||||||| |||||||| ||| || ||||||||||||||||| | ||| Sbjct: 181 gactccgaggcggcggcggc---------ggaagctaaggccgaggatgcggttgctgcg 231 Query: 265 gagggtgaggcggaaggcaaggcgtcctccgccatcgtctccaccaacccccggcccgag 324 || || |||||||| ||||||||||| ||||||||||| ||||| || ||| || ||| Sbjct: 232 gaaggggaggcggacggcaaggcgtcttccgccatcgtgcccaccgtcctccgccctgag 291 Query: 325 gatttcctctcggtcattgccctgcctcttccacaccgaccactctttccaggattttat 384 || | |||||||||||| || |||||||| ||||| || ||||||||||| ||||||||| Sbjct: 292 gactgcctctcggtcatagcactgcctctcccacatcgtccactctttcctggattttat 351 Query: 385 atgccgatctatgtaaaggacctaaag 411 |||||||||||||||||||||| |||| Sbjct: 352 atgccgatctatgtaaaggaccaaaag 378
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 174 bits (88), Expect = 1e-40 Identities = 234/284 (82%), Gaps = 9/284 (3%) Strand = Plus / Minus Query: 19 cccctcatgctgcgcgcggcggcggctgccgccactgccttcccggcgcggttcgccgcc 78 ||||||||||||||||| |||||||| |||||| | | |||||| |||||||||| ||| Sbjct: 29249147 cccctcatgctgcgcgccgcggcggccgccgccgccgtcttcccctcgcggttcgctgcc 29249088 Query: 79 gtgccggccggggcggcggcggaggagatgcggtcgccgctgctcagggttttcgggtcg 138 | |||||||| |||||||| |||||| | |||||||||||||||||||||| ||| || Sbjct: 29249087 gcgccggccgtggcggcggttgaggaggtcaggtcgccgctgctcagggttttgggggcg 29249028 Query: 139 ctgaggggcggccggagctcggttatggggaggcgggcgcgcttctgctccagcttctcc 198 || | ||||||||| |||| | |||||| |||||||||||||||||| || | || Sbjct: 29249027 ctccgaggcggccgggtctcgacgctcgggaggagggcgcgcttctgctccaactccgcc 29248968 Query: 199 gggagcgactccgaggccgcggcggcggccgcagcggatgcgaaggccgaggatgcggtc 258 ||||||||||||||||| |||||||| ||| || ||||||||||||||||| Sbjct: 29248967 gggagcgactccgaggcggcggcggc---------ggaagctaaggccgaggatgcggtt 29248917 Query: 259 gtcgcggagggtgaggcggaaggcaaggcgtcctccgccatcgt 302 | ||||| || |||||||| ||||||||||| ||||||||||| Sbjct: 29248916 gctgcggaaggggaggcggacggcaaggcgtcttccgccatcgt 29248873 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 336 ggtcattgccctgcctcttccacaccgaccactctttccaggattttatatgccgatcta 395 |||||| || |||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 29247738 ggtcatagcactgcctctcccacatcgtccactctttcctggattttatatgccgatcta 29247679 Query: 396 tgtaaagg 403 |||||||| Sbjct: 29247678 tgtaaagg 29247671 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 216 cgcggcggcggccgcagcggatgcg 240 ||||||||||||||| ||||||||| Sbjct: 8357114 cgcggcggcggccgcggcggatgcg 8357090 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 ggccgcggcggcggccgcagcgga 236 |||||||||||||||||| ||||| Sbjct: 25864810 ggccgcggcggcggccgcggcgga 25864833
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 174 bits (88), Expect = 1e-40 Identities = 234/284 (82%), Gaps = 9/284 (3%) Strand = Plus / Minus Query: 19 cccctcatgctgcgcgcggcggcggctgccgccactgccttcccggcgcggttcgccgcc 78 ||||||||||||||||| |||||||| |||||| | | |||||| |||||||||| ||| Sbjct: 37836 cccctcatgctgcgcgccgcggcggccgccgccgccgtcttcccctcgcggttcgctgcc 37777 Query: 79 gtgccggccggggcggcggcggaggagatgcggtcgccgctgctcagggttttcgggtcg 138 | |||||||| |||||||| |||||| | |||||||||||||||||||||| ||| || Sbjct: 37776 gcgccggccgtggcggcggttgaggaggtcaggtcgccgctgctcagggttttgggggcg 37717 Query: 139 ctgaggggcggccggagctcggttatggggaggcgggcgcgcttctgctccagcttctcc 198 || | ||||||||| |||| | |||||| |||||||||||||||||| || | || Sbjct: 37716 ctccgaggcggccgggtctcgacgctcgggaggagggcgcgcttctgctccaactccgcc 37657 Query: 199 gggagcgactccgaggccgcggcggcggccgcagcggatgcgaaggccgaggatgcggtc 258 ||||||||||||||||| |||||||| ||| || ||||||||||||||||| Sbjct: 37656 gggagcgactccgaggcggcggcggc---------ggaagctaaggccgaggatgcggtt 37606 Query: 259 gtcgcggagggtgaggcggaaggcaaggcgtcctccgccatcgt 302 | ||||| || |||||||| ||||||||||| ||||||||||| Sbjct: 37605 gctgcggaaggggaggcggacggcaaggcgtcttccgccatcgt 37562 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 336 ggtcattgccctgcctcttccacaccgaccactctttccaggattttatatgccgatcta 395 |||||| || |||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 36427 ggtcatagcactgcctctcccacatcgtccactctttcctggattttatatgccgatcta 36368 Query: 396 tgtaaagg 403 |||||||| Sbjct: 36367 tgtaaagg 36360
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1165_F02 Length = 125993 Score = 174 bits (88), Expect = 1e-40 Identities = 234/284 (82%), Gaps = 9/284 (3%) Strand = Plus / Minus Query: 19 cccctcatgctgcgcgcggcggcggctgccgccactgccttcccggcgcggttcgccgcc 78 ||||||||||||||||| |||||||| |||||| | | |||||| |||||||||| ||| Sbjct: 89221 cccctcatgctgcgcgccgcggcggccgccgccgccgtcttcccctcgcggttcgctgcc 89162 Query: 79 gtgccggccggggcggcggcggaggagatgcggtcgccgctgctcagggttttcgggtcg 138 | |||||||| |||||||| |||||| | |||||||||||||||||||||| ||| || Sbjct: 89161 gcgccggccgtggcggcggttgaggaggtcaggtcgccgctgctcagggttttgggggcg 89102 Query: 139 ctgaggggcggccggagctcggttatggggaggcgggcgcgcttctgctccagcttctcc 198 || | ||||||||| |||| | |||||| |||||||||||||||||| || | || Sbjct: 89101 ctccgaggcggccgggtctcgacgctcgggaggagggcgcgcttctgctccaactccgcc 89042 Query: 199 gggagcgactccgaggccgcggcggcggccgcagcggatgcgaaggccgaggatgcggtc 258 ||||||||||||||||| |||||||| ||| || ||||||||||||||||| Sbjct: 89041 gggagcgactccgaggcggcggcggc---------ggaagctaaggccgaggatgcggtt 88991 Query: 259 gtcgcggagggtgaggcggaaggcaaggcgtcctccgccatcgt 302 | ||||| || |||||||| ||||||||||| ||||||||||| Sbjct: 88990 gctgcggaaggggaggcggacggcaaggcgtcttccgccatcgt 88947 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 336 ggtcattgccctgcctcttccacaccgaccactctttccaggattttatatgccgatcta 395 |||||| || |||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 87812 ggtcatagcactgcctctcccacatcgtccactctttcctggattttatatgccgatcta 87753 Query: 396 tgtaaagg 403 |||||||| Sbjct: 87752 tgtaaagg 87745
>gb|U85495.1|ZMU85495 Zea mays LON2 protease (LON2) mRNA, complete cds Length = 3411 Score = 121 bits (61), Expect = 2e-24 Identities = 260/325 (80%), Gaps = 6/325 (1%) Strand = Plus / Plus Query: 90 ggcggcggcggaggagatgcggtcgccgctgctcagggttttcgggtcgctgaggggcgg 149 |||||||||||||||| | |||| |||||||||||||| | ||| ||||||||| ||| Sbjct: 71 ggcggcggcggaggagctcaggtctccgctgctcagggtcattgggacgctgagggacgg 130 Query: 150 ccggagctcggttatg---gggaggcgggcgcgcttctgctccagcttctccgggagcga 206 ||| ||||||| || || ||| ||| ||| |||||||||| || |||| |||||| Sbjct: 131 ccgcggctcggtgctgctgggtaggagggtgcgtttctgctccaactcttccgcgagcga 190 Query: 207 ctccgaggccgcggcggcggccgcagcggatgcgaaggccgaggatgcggtcgtcgcgga 266 | ||||||| ||||| ||| | ||||| |||||||||||||||||| || ||||| Sbjct: 191 caccgaggc---ggcggtggcagaggcggaggcgaaggccgaggatgcgtccgctgcgga 247 Query: 267 gggtgaggcggaaggcaaggcgtcctccgccatcgtctccaccaacccccggcccgagga 326 |||||||||||| |||||||||| ||||||||||| | |||| | || ||| || Sbjct: 248 gggtgaggcggacagcaaggcgtcttccgccatcgtgccgaccagcaccaatatcgatga 307 Query: 327 tttcctctcggtcattgccctgcctcttccacaccgaccactctttccaggattttatat 386 || ||||||||| || || | ||||||||||| || ||||||||||| ||||| || || Sbjct: 308 ttgcctctcggttatagcgttacctcttccacatcggccactctttcctggattctacat 367 Query: 387 gccgatctatgtaaaggacctaaag 411 ||||||| |||| ||||||| |||| Sbjct: 368 gccgatcaatgtgaaggaccaaaag 392
>gb|AY109578.1| Zea mays CL1712_1 mRNA sequence Length = 3346 Score = 105 bits (53), Expect = 1e-19 Identities = 243/305 (79%), Gaps = 6/305 (1%) Strand = Plus / Plus Query: 110 ggtcgccgctgctcagggttttcgggtcgctgaggggcggccggagctcggttatg---g 166 |||| |||||||||||||| | ||| ||||||||| |||||| ||||||| || | Sbjct: 91 ggtctccgctgctcagggtcattgggacgctgagggacggccgcggctcggtgctgctgg 150 Query: 167 ggaggcgggcgcgcttctgctccagcttctccgggagcgactccgaggccgcggcggcgg 226 | ||| ||| ||| |||||||||| || |||| ||||||| ||||||| ||||| || Sbjct: 151 gtaggagggtgcgtttctgctccaactcttccgcgagcgacaccgaggc---ggcggtgg 207 Query: 227 ccgcagcggatgcgaaggccgaggatgcggtcgtcgcggagggtgaggcggaaggcaagg 286 | | ||||| |||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 208 cagaggcggaggcgaaggccgaggatgcgtccgctgcggagggtgaggcggacagcaagg 267 Query: 287 cgtcctccgccatcgtctccaccaacccccggcccgaggatttcctctcggtcattgccc 346 |||| ||||||||||| | |||| | || ||| |||| ||||||||| || || Sbjct: 268 cgtcttccgccatcgtgccgaccagcaccaatatcgatgattgcctctcggttatagcgt 327 Query: 347 tgcctcttccacaccgaccactctttccaggattttatatgccgatctatgtaaaggacc 406 | ||||||||||| || ||||||||||| ||||| || ||||||||| |||| ||||||| Sbjct: 328 tacctcttccacatcggccactctttcctggattctacatgccgatcaatgtgaaggacc 387 Query: 407 taaag 411 |||| Sbjct: 388 aaaag 392
>ref|XM_866268.1| PREDICTED: Bos taurus similar to eomesodermin, transcript variant 3 (LOC511947), mRNA Length = 2071 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagcggatgcgaaggccgagg 250 |||||||||||||||||||||| |||| |||||||| Sbjct: 380 gccgcggcggcggccgcagcggctgcggcggccgagg 344
>ref|XM_589376.2| PREDICTED: Bos taurus similar to eomesodermin, transcript variant 2 (LOC511947), mRNA Length = 2128 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagcggatgcgaaggccgagg 250 |||||||||||||||||||||| |||| |||||||| Sbjct: 380 gccgcggcggcggccgcagcggctgcggcggccgagg 344
>ref|NM_184227.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1581 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 1272 tgctccagcttctcctggagcgactcc 1246
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete sequence Length = 137709 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 204 cgactccgaggccgcggcggcggccgc 230 ||||| ||||||||||||||||||||| Sbjct: 61798 cgactacgaggccgcggcggcggccgc 61772
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 204 cgactccgaggccgcggcggcggccgc 230 ||||| ||||||||||||||||||||| Sbjct: 15275550 cgactacgaggccgcggcggcggccgc 15275576 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 71 tcgccgccgtgccggccggggcggcggcggagg 103 ||||||||| | |||||| |||||||||||||| Sbjct: 32439776 tcgccgccgcggcggccgcggcggcggcggagg 32439808 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 35468103 ggcggaggagatgcggtcgc 35468084
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 204 cgactccgaggccgcggcggcggccgc 230 ||||| ||||||||||||||||||||| Sbjct: 15270084 cgactacgaggccgcggcggcggccgc 15270110 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 71 tcgccgccgtgccggccggggcggcggcggagg 103 ||||||||| | |||||| |||||||||||||| Sbjct: 32530286 tcgccgccgcggcggccgcggcggcggcggagg 32530318 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 35558175 ggcggaggagatgcggtcgc 35558156
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 1672916 tgctccagcttctcctggagcgactcc 1672942 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 tcctccgccatcgtctccaccaaccccc 316 |||||||||| |||| |||||||||||| Sbjct: 39325510 tcctccgccaccgtcaccaccaaccccc 39325537
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 15259 tgctccagcttctcctggagcgactcc 15285
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 110147 tgctccagcttctcctggagcgactcc 110173
>dbj|AK107546.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A04, full insert sequence Length = 1078 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 204 cgactccgaggccgcggcggcggccgc 230 ||||| ||||||||||||||||||||| Sbjct: 727 cgactacgaggccgcggcggcggccgc 753
>dbj|AK069315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014E13, full insert sequence Length = 829 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 52 tgctccagcttctcctggagcgactcc 78
>dbj|AK061853.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F10, full insert sequence Length = 1581 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 1272 tgctccagcttctcctggagcgactcc 1246
>dbj|AK060150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D04, full insert sequence Length = 1181 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 tgctccagcttctccgggagcgactcc 210 ||||||||||||||| ||||||||||| Sbjct: 768 tgctccagcttctcctggagcgactcc 742
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 74 ccgccgtgccggccggggcggcggcg 99 |||||| ||||||||||||||||||| Sbjct: 2864942 ccgccgcgccggccggggcggcggcg 2864967
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 ccgccgtgccggccggggcggcggcg 99 |||||| ||||||||||||||||||| Sbjct: 20661 ccgccgcgccggccggggcggcggcg 20636
>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory pathway protein D (gspD), general secretory pathway protein E (gspE), general secretory pathway protein F (gspF), GspC (gspC), general secretory pathway protein G (gspG), general secretory pathway protein H (gspH), general secretory pathway protein I (gspI), general secretory pathway protein J (gspJ), general secretory pathway protein K (gspK), general secretory pathway protein L (gspL), general secretory pathway protein M (gspM), and general secretory pathway protein N (gspN) genes, complete cds; and unknown genes Length = 20302 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 ccgccgtgccggccggggcggcggcg 99 |||||| ||||||||||||||||||| Sbjct: 15786 ccgccgcgccggccggggcggcggcg 15761
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 81 gccggccggggcggcggcggag 102 |||||||||||||||||||||| Sbjct: 63197 gccggccggggcggcggcggag 63176
>ref|XM_450189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gcggcggcggaggagatgcgg 111 ||||||||||||||||||||| Sbjct: 189 gcggcggcggaggagatgcgg 169
>ref|NM_186847.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1368 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 216 cgcggcggcggccgcagcggatgcg 240 ||||||||||||||| ||||||||| Sbjct: 93 cgcggcggcggccgcggcggatgcg 117
>ref|NM_201196.1| Danio rerio zgc:65884 (zgc:65884), mRNA Length = 1639 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cgcggcggcggctgccgccac 53 ||||||||||||||||||||| Sbjct: 999 cgcggcggcggctgccgccac 979
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 71 tcgccgccgtgccggccggggcggcggcggagg 103 ||||||||| | |||||| |||||||||||||| Sbjct: 91904 tcgccgccgcggcggccgcggcggcggcggagg 91936
>ref|XM_865722.1| PREDICTED: Bos taurus hypothetical protein LOC614279 (LOC614279), mRNA Length = 2106 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 gccggccggggcggcggcggaggag 105 |||||||| |||||||||||||||| Sbjct: 308 gccggccgtggcggcggcggaggag 332
>gb|BC056324.1| Danio rerio zgc:65884, mRNA (cDNA clone MGC:65884 IMAGE:6800994), complete cds Length = 1639 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cgcggcggcggctgccgccac 53 ||||||||||||||||||||| Sbjct: 999 cgcggcggcggctgccgccac 979
>ref|XM_753641.1| Ustilago maydis 521 hypothetical protein (UM02587.1) partial mRNA Length = 4266 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagcg 234 ||||||||||||||||||||| Sbjct: 3389 gccgcggcggcggccgcagcg 3369
>gb|U82695.3| Homo sapiens chromosome X clone XXcos-LN0617, XXcos-162H10, I104-J0935, XXcos-M1937, XXcos-12H4, XXcos-F0731 map q28, complete sequence Length = 167488 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 ccgaggccgcggcggcggccg 229 ||||||||||||||||||||| Sbjct: 122579 ccgaggccgcggcggcggccg 122599
>gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-66N11 map q28, complete sequence Length = 191983 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 ccgaggccgcggcggcggccg 229 ||||||||||||||||||||| Sbjct: 77227 ccgaggccgcggcggcggccg 77247
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 gtgccggccggggcggcggcggagg 103 ||||||||||||||| ||||||||| Sbjct: 150978 gtgccggccggggcgccggcggagg 150954
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gtgccggccggggcggcggcggagg 103 ||||||||||||||| ||||||||| Sbjct: 27096 gtgccggccggggcgccggcggagg 27120 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gccggccggggcggcggcgg 100 |||||||||||||||||||| Sbjct: 170526 gccggccggggcggcggcgg 170507
>gb|BC065345.1| Danio rerio zgc:65884, mRNA (cDNA clone MGC:77344 IMAGE:6968064), complete cds Length = 1626 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cgcggcggcggctgccgccac 53 ||||||||||||||||||||| Sbjct: 999 cgcggcggcggctgccgccac 979
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gcggcggcggaggagatgcgg 111 ||||||||||||||||||||| Sbjct: 21117037 gcggcggcggaggagatgcgg 21117017
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagcg 234 ||||||||||||||||||||| Sbjct: 24826855 gccgcggcggcggccgcagcg 24826835
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 ctgctccagcttctccgggag 203 ||||||||||||||||||||| Sbjct: 30358682 ctgctccagcttctccgggag 30358702 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggcggcggccgcagcggatg 238 |||||||||||||||||||| Sbjct: 10849386 ggcggcggccgcagcggatg 10849367
>emb|BX004974.21| Zebrafish DNA sequence from clone CH211-74A16 in linkage group 18, complete sequence Length = 186303 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cgcggcggcggctgccgccac 53 ||||||||||||||||||||| Sbjct: 154868 cgcggcggcggctgccgccac 154888
>dbj|AP005882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0069D16 Length = 14774 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gcggcggcggaggagatgcgg 111 ||||||||||||||||||||| Sbjct: 191 gcggcggcggaggagatgcgg 171
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 216 cgcggcggcggccgcagcggatgcg 240 ||||||||||||||| ||||||||| Sbjct: 62212 cgcggcggcggccgcggcggatgcg 62188
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 ggccgcggcggcggccgcagc 233 ||||||||||||||||||||| Sbjct: 2105716 ggccgcggcggcggccgcagc 2105736
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagcg 234 ||||||||||||||||||||| Sbjct: 37938 gccgcggcggcggccgcagcg 37918
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagcg 234 ||||||||||||||||||||| Sbjct: 160536 gccgcggcggcggccgcagcg 160516
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 ctgctccagcttctccgggag 203 ||||||||||||||||||||| Sbjct: 39542 ctgctccagcttctccgggag 39562
>dbj|AK066566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O18, full insert sequence Length = 3520 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 gccgcggcggcggccgcagcg 234 ||||||||||||||||||||| Sbjct: 85 gccgcggcggcggccgcagcg 105
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0478E02 Length = 140715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gcggcggcggaggagatgcgg 111 ||||||||||||||||||||| Sbjct: 138337 gcggcggcggaggagatgcgg 138317
>gb|AC006443.1|AC006443 Homo sapiens chromosome 9, clone hRPK.494_N_15, complete sequence Length = 210636 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 gtgccggccggggcggcggcg 99 ||||||||||||||||||||| Sbjct: 183129 gtgccggccggggcggcggcg 183109
>gb|DQ154260.1| Chlamydomonas reinhardtii copper responsive regulator 1 (CRR1) mRNA, complete cds Length = 5847 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gaggccgcggcggcggccgcagcgg 235 |||||||||||||||||||| |||| Sbjct: 759 gaggccgcggcggcggccgcggcgg 735
>gb|AY484394.1| Chlamydomonas reinhardtii copper responsive regulator 1 (CRR1) gene, complete cds Length = 6096 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gaggccgcggcggcggccgcagcgg 235 |||||||||||||||||||| |||| Sbjct: 2084 gaggccgcggcggcggccgcggcgg 2060
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 gccgccgtgccggccggggcggcgg 97 |||||| |||||||||||||||||| Sbjct: 2689304 gccgccctgccggccggggcggcgg 2689280
>ref|XM_475092.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2172 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggccggggcggcggcggaggaga 106 |||| ||||||||||||||||||| Sbjct: 24 cggcgggggcggcggcggaggaga 47
>ref|XM_464998.1| Oryza sativa (japonica cultivar-group), mRNA Length = 519 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ggcggcggccgcagcggatg 238 |||||||||||||||||||| Sbjct: 150 ggcggcggccgcagcggatg 169
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgcggcggcggccgcagcgg 235 |||||||||||||||||||| Sbjct: 970179 cgcggcggcggccgcagcgg 970160
>ref|NM_190333.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1323 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 tcctccgccatcgtctccaccaaccccc 316 |||||||||| |||| |||||||||||| Sbjct: 1187 tcctccgccaccgtcaccaccaaccccc 1214
>ref|NM_185176.1| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 184 ggcggaggagatgcggtcgc 203
>ref|NM_193019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 741 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 ggccgcggcggcggccgcagcgga 236 |||||||||||||||||| ||||| Sbjct: 6 ggccgcggcggcggccgcggcgga 29
>ref|NM_002220.1| Homo sapiens inositol 1,4,5-trisphosphate 3-kinase A (ITPKA), mRNA Length = 1782 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgcggcggcggccgcagcg 234 |||||||||||||||||||| Sbjct: 165 ccgcggcggcggccgcagcg 146
>ref|XM_473228.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 390 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcgga 236 |||||||||||||||||||| Sbjct: 46 gcggcggcggccgcagcgga 65
>gb|AE017142.1| Yersinia pestis biovar Medievalis str. 91001 section 16 of 16 of the complete genome Length = 229338 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagc 233 |||||||||||||||||||| Sbjct: 110874 gccgcggcggcggccgcagc 110855
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 cgactccgaggccgcggcggcggccgca 231 |||| |||||||||||| |||||||||| Sbjct: 2684554 cgacgccgaggccgcggtggcggccgca 2684527
>ref|XM_425866.1| PREDICTED: Gallus gallus similar to KIAA0904 protein (LOC428306), mRNA Length = 3297 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcggatgcgaagg 244 ||||||||||| ||||||| |||||||| Sbjct: 1321 gcggcggcggcggcagcggctgcgaagg 1348
>ref|XM_414411.1| PREDICTED: Gallus gallus similar to fez-like (LOC416074), mRNA Length = 669 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggggcggcggcggaggag 105 |||||||||||||||||||| Sbjct: 471 ccggggcggcggcggaggag 452
>gb|DQ356948.1| Crocodilepox virus, complete genome Length = 190054 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcgcgcggcggcggctgccg 49 |||||||||||||||||||| Sbjct: 160540 gcgcgcggcggcggctgccg 160559
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagc 233 |||||||||||||||||||| Sbjct: 273792 gccgcggcggcggccgcagc 273773
>gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0628H02, complete sequence Length = 65115 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cggccggggcggcggcggaggaga 106 |||| ||||||||||||||||||| Sbjct: 6092 cggcgggggcggcggcggaggaga 6069
>gb|AY277957.1| Takifugu rubripes transcription factor Sox21 (Sox21) gene, complete cds Length = 3619 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcggatgcg 240 ||||||||||||||||||| |||| Sbjct: 1584 gcggcggcggccgcagcggctgcg 1607
>gb|AY364645.1| Chlamydomonas reinhardtii NIMA-related kinase 3 mRNA, complete cds Length = 2736 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgcggcggcggccgcagcgg 235 |||||||||||||||||||| Sbjct: 960 cgcggcggcggccgcagcgg 979
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gttcgccgccgtgccggccg 88 |||||||||||||||||||| Sbjct: 1653960 gttcgccgccgtgccggccg 1653941
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ggcgcgcttctgctccagcttctc 197 |||||||||| ||||||||||||| Sbjct: 1374189 ggcgcgcttcagctccagcttctc 1374212
>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes Length = 5940 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ggcggcggcggaggagatgcggtc 113 |||||||||||||||| ||||||| Sbjct: 15 ggcggcggcggaggagctgcggtc 38
>gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's Hospital Oakland Research Institute) complete sequence Length = 211076 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagc 233 |||||||||||||||||||| Sbjct: 156717 gccgcggcggcggccgcagc 156698
>gb|AF083975.2| Fowl adenovirus 9, complete genome Length = 45063 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 19 cccctcatgctgcgcgcggcggcggctgccgc 50 ||||||| ||||| |||||||||||| ||||| Sbjct: 7477 cccctcaggctgctcgcggcggcggcggccgc 7446
>emb|AL121789.38|HSJ493H23 Human DNA sequence from clone RP3-493H23 on chromosome 6q26-27 Contains the 5' end of the PDE10A gene for phosphodiesterase 10A and a CpG island, complete sequence Length = 74227 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgcgcgcggcggcggctgc 47 |||||||||||||||||||| Sbjct: 67922 ctgcgcgcggcggcggctgc 67903
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagc 233 |||||||||||||||||||| Sbjct: 4301855 gccgcggcggcggccgcagc 4301836
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cgcgcggcggcggctgccgc 50 |||||||||||||||||||| Sbjct: 57023 cgcgcggcggcggctgccgc 57042
>gb|BC026331.1| Homo sapiens inositol 1,4,5-trisphosphate 3-kinase A, mRNA (cDNA clone MGC:26387 IMAGE:4792595), complete cds Length = 1837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgcggcggcggccgcagcg 234 |||||||||||||||||||| Sbjct: 208 ccgcggcggcggccgcagcg 189
>emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065J09, complete sequence Length = 117443 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcgga 236 |||||||||||||||||||| Sbjct: 14290 gcggcggcggccgcagcgga 14309
>emb|AJ414158.1| Yersinia pestis strain CO92 complete genome; segment 18/20 Length = 235050 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gccgcggcggcggccgcagc 233 |||||||||||||||||||| Sbjct: 13514 gccgcggcggcggccgcagc 13533
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065G12 Length = 165006 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 tcctccgccatcgtctccaccaaccccc 316 |||||||||| |||| |||||||||||| Sbjct: 127216 tcctccgccaccgtcaccaccaaccccc 127243
>dbj|AB110181.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, partial cds, clone: 13YPR054 Length = 1092 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 195 ggcggaggagatgcggtcgc 214
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 atgctgcgcgcggcggcggc 44 |||||||||||||||||||| Sbjct: 4274999 atgctgcgcgcggcggcggc 4275018
>gb|AE011773.1| Xanthomonas axonopodis pv. citri str. 306, section 151 of 469 of the complete genome Length = 10242 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gttcgccgccgtgccggccg 88 |||||||||||||||||||| Sbjct: 3206 gttcgccgccgtgccggccg 3187
>gb|AC087721.4| Homo sapiens chromosome 15 clone RP11-16O9 map 15q15, complete sequence Length = 196603 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgcggcggcggccgcagcg 234 |||||||||||||||||||| Sbjct: 181152 ccgcggcggcggccgcagcg 181133
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gcgggcgcgcttctgctcca 190 |||||||||||||||||||| Sbjct: 3757576 gcgggcgcgcttctgctcca 3757595
>gb|AC148705.1| Macaca mulatta Major Histocompatibility Complex MMU348N13, complete sequence Length = 186491 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcgcgcggcggcggctgccg 49 |||||||||||||||||||| Sbjct: 170737 gcgcgcggcggcggctgccg 170756
>gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex BAC MMU337E21, complete sequence Length = 147539 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gcgcgcggcggcggctgccg 49 |||||||||||||||||||| Sbjct: 72207 gcgcgcggcggcggctgccg 72226
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcgga 236 |||||||||||||||||||| Sbjct: 26127105 gcggcggcggccgcagcgga 26127124
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gaggccgcggcggcggccgc 230 |||||||||||||||||||| Sbjct: 22568399 gaggccgcggcggcggccgc 22568380
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cggccggggcggcggcggaggaga 106 |||| ||||||||||||||||||| Sbjct: 12472554 cggcgggggcggcggcggaggaga 12472531
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gcgcgcggcggcggctgccg 49 |||||||||||||||||||| Sbjct: 1555316 gcgcgcggcggcggctgccg 1555297
>dbj|AB041798.2| Homo sapiens HSPDE10A gene for phosphodiesterase 10A1 (PDE10A1), phosphodiesterase 10A7 (PDE10A7), partial cds Length = 19594 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgcgcgcggcggcggctgc 47 |||||||||||||||||||| Sbjct: 245 ctgcgcgcggcggcggctgc 264
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 19523 ggcggaggagatgcggtcgc 19542
>ref|XM_343825.2| PREDICTED: Rattus norvegicus similar to Trim1 alpha (LOC363502), mRNA Length = 2680 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcgga 236 |||||||||||||||||||| Sbjct: 178 gcggcggcggccgcagcgga 197
>ref|XM_573089.1| PREDICTED: Rattus norvegicus similar to hypothetical protein A830006N08 (LOC497903), mRNA Length = 2361 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgcggcggcggccgcagc 233 |||||||||||||||||||| Sbjct: 41 gccgcggcggcggccgcagc 22
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 1066 ggcggaggagatgcggtcgc 1047
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551C06 Length = 149829 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 tcctccgccatcgtctccaccaaccccc 316 |||||||||| |||| |||||||||||| Sbjct: 106756 tcctccgccaccgtcaccaccaaccccc 106783
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcgccgccgtgccggccggg 90 |||||||||||||||||||| Sbjct: 1333410 tcgccgccgtgccggccggg 1333429
>gb|AY892958.1| Synthetic construct Homo sapiens clone FLH139890.01L inositol 145-trisphosphate 3-kinase A (ITPKA) mRNA, partial cds Length = 1386 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgcggcggcggccgcagcg 234 |||||||||||||||||||| Sbjct: 154 ccgcggcggcggccgcagcg 135
>gb|AY890496.1| Synthetic construct Homo sapiens clone FLH139894.01X inositol 145-trisphosphate 3-kinase A (ITPKA) mRNA, complete cds Length = 1386 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgcggcggcggccgcagcg 234 |||||||||||||||||||| Sbjct: 154 ccgcggcggcggccgcagcg 135
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggcggcggccgcagcggatg 238 |||||||||||||||||||| Sbjct: 55585 ggcggcggccgcagcggatg 55566
>gb|AY008620.1| Cattleya granulosa 'Bahia' isolate MWC1156 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 615 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgcggcggcggctgccgcc 51 |||||||||||||||||||| Sbjct: 44 gcgcggcggcggctgccgcc 63
>gb|AY008619.1| Cattleya elongata isolate MWC1170 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 614 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgcggcggcggctgccgcc 51 |||||||||||||||||||| Sbjct: 44 gcgcggcggcggctgccgcc 63
>gb|AF260207.1| Cattleya acklandiae internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 637 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgcggcggcggctgccgcc 51 |||||||||||||||||||| Sbjct: 44 gcgcggcggcggctgccgcc 63
>gb|AF260205.1| Cattleya walkeriana internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 645 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgcggcggcggctgccgcc 51 |||||||||||||||||||| Sbjct: 44 gcgcggcggcggctgccgcc 63
>dbj|AK110389.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-E02, full insert sequence Length = 3744 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 cgcggcggcggctgccgcca 52 |||||||||||||||||||| Sbjct: 2475 cgcggcggcggctgccgcca 2456
>ref|XM_310639.2| Anopheles gambiae str. PEST ENSANGP00000020814 (ENSANGG00000018325), partial mRNA Length = 3273 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcggatgcgaagg 244 ||||||||||| ||||| |||||||||| Sbjct: 1864 gcggcggcggcggcagccgatgcgaagg 1891
>dbj|AK105776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F08, full insert sequence Length = 1200 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 185 ggcggaggagatgcggtcgc 204
>dbj|AK100478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095B21, full insert sequence Length = 2683 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggccggggcggcggcggaggaga 106 |||| ||||||||||||||||||| Sbjct: 103 cggcgggggcggcggcggaggaga 126
>dbj|AK068201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146E23, full insert sequence Length = 1084 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcggaggagatgcggtcgc 115 |||||||||||||||||||| Sbjct: 182 ggcggaggagatgcggtcgc 201
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 ggccgcggcggcggccgcagcgga 236 |||||||||||||||||| ||||| Sbjct: 35258 ggccgcggcggcggccgcggcgga 35281
>gb|AY109376.1| Zea mays CL7359_1 mRNA sequence Length = 641 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gcggcggccgcagcggatgc 239 |||||||||||||||||||| Sbjct: 455 gcggcggccgcagcggatgc 474
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 atgctgcgcgcggcggcggc 44 |||||||||||||||||||| Sbjct: 4281789 atgctgcgcgcggcggcggc 4281808
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 ggccgcggcggcggccgcag 232 |||||||||||||||||||| Sbjct: 1172996 ggccgcggcggcggccgcag 1173015
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cgtgccggccggggcggcgg 97 |||||||||||||||||||| Sbjct: 1691634 cgtgccggccggggcggcgg 1691653
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gaggccgcggcggcggccgc 230 |||||||||||||||||||| Sbjct: 22496744 gaggccgcggcggcggccgc 22496725
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gcggcggcggccgcagcgga 236 |||||||||||||||||||| Sbjct: 161432 gcggcggcggccgcagcgga 161451
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gaggccgcggcggcggccgc 230 |||||||||||||||||||| Sbjct: 70978 gaggccgcggcggcggccgc 70959
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gaggccgcggcggcggccgc 230 |||||||||||||||||||| Sbjct: 13673 gaggccgcggcggcggccgc 13654
>gb|AF058302.1|AF058302 Streptomyces roseofulvus frenolicin biosynthetic gene cluster, complete sequence Length = 25306 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tgctgcgcgcggcggcggctgccg 49 ||||||||||||||||||| |||| Sbjct: 22105 tgctgcgcgcggcggcggcggccg 22082
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete sequence Length = 242530 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggggcggcggcggaggag 105 |||||||||||||||||||| Sbjct: 152249 ccggggcggcggcggaggag 152230
>emb|X54938.1|HSHIP3K Human mRNA for inositol 1,4,5-triphosphate 3-kinase Length = 1782 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgcggcggcggccgcagcg 234 |||||||||||||||||||| Sbjct: 165 ccgcggcggcggccgcagcg 146
>dbj|AU066542.1| Chlamydomonas sp. HS-5 mRNA for hypothetical protein, NaCl+paraquat inducible, complete cds, clone:M28 Length = 506 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 cggcggcggccgcagcggatgcga 241 |||||||||| ||||||||||||| Sbjct: 166 cggcggcggcggcagcggatgcga 189
>dbj|D12583.1|RERALN Rhodococcus rhodochrous aliphatic nitrilase gene, complete cds Length = 1653 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 atgcggtcgtcgcggagggtgagg 274 ||||||||||||| |||||||||| Sbjct: 585 atgcggtcgtcgccgagggtgagg 562 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,094,340 Number of Sequences: 3902068 Number of extensions: 4094340 Number of successful extensions: 136431 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130480 Number of HSP's gapped (non-prelim): 5951 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
