ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
2ref|XM_418829.1| PREDICTED: Gallus gallus similar to MLN64 N-ter... 40 3.1
3gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
4gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, com... 40 3.1
5ref|NM_033113.1| Homo sapiens zinc finger protein 628 (ZNF628), ... 40 3.1
6gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 3.1
7gb|AC008735.9| Homo sapiens chromosome 19 clone CTD-2537I9, comp... 40 3.1
8gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete... 40 3.1
9gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, comple... 40 3.1
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
11gb|BC089449.1| Homo sapiens zinc finger protein 628, mRNA (cDNA ... 40 3.1
12dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DN... 40 3.1
13emb|BX935588.1| Gallus gallus finished cDNA, clone ChEST84d7 40 3.1
14dbj|AK102861.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.1
15emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.1
16emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chr... 40 3.1
17emb|AL845257.2| Mouse DNA sequence from clone RP23-280K4 on chro... 40 3.1

>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18,
              complete sequence
          Length = 156643

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     cctcccaccgccgcccccgc 110
              ||||||||||||||||||||
Sbjct: 147819 cctcccaccgccgcccccgc 147800



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>ref|XM_418829.1| PREDICTED: Gallus gallus similar to MLN64 N-terminal homolog; MLN64
           N-terminal domain homolog (LOC420730), mRNA
          Length = 1531

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 100 gccgcccccgcgcctcgcgtcacc 123
           |||||||||||||| |||||||||
Sbjct: 57  gccgcccccgcgccgcgcgtcacc 34



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>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11,
             complete sequence
          Length = 112796

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    cctcccaccgccgcccccgc 110
             ||||||||||||||||||||
Sbjct: 38740 cctcccaccgccgcccccgc 38721



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>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence
          Length = 236143

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ccgccgcccccgcgcctcgc 117
             ||||||||||||||||||||
Sbjct: 51057 ccgccgcccccgcgcctcgc 51038



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>ref|NM_033113.1| Homo sapiens zinc finger protein 628 (ZNF628), mRNA
          Length = 3864

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   cctcccaccgccgcccccgcgcct 114
            |||||| |||||||||||||||||
Sbjct: 1592 cctcccgccgccgcccccgcgcct 1615



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      cccaccgccgcccccgcgcc 113
               ||||||||||||||||||||
Sbjct: 2492772 cccaccgccgcccccgcgcc 2492753



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>gb|AC008735.9| Homo sapiens chromosome 19 clone CTD-2537I9, complete sequence
          Length = 223879

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 91     cctcccaccgccgcccccgcgcct 114
              |||||| |||||||||||||||||
Sbjct: 194114 cctcccgccgccgcccccgcgcct 194091



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>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence
          Length = 102653

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    cccaccgccgcccccgcgcc 113
             ||||||||||||||||||||
Sbjct: 86481 cccaccgccgcccccgcgcc 86462



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>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence
          Length = 79677

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    cccaccgccgcccccgcgcc 113
             ||||||||||||||||||||
Sbjct: 43392 cccaccgccgcccccgcgcc 43411



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       cctcccaccgccgcccccgc 110
                ||||||||||||||||||||
Sbjct: 28720027 cctcccaccgccgcccccgc 28720008



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>gb|BC089449.1| Homo sapiens zinc finger protein 628, mRNA (cDNA clone MGC:105139
            IMAGE:30560806), complete cds
          Length = 3864

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   cctcccaccgccgcccccgcgcct 114
            |||||| |||||||||||||||||
Sbjct: 1592 cctcccgccgccgcccccgcgcct 1615



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>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence
          Length = 94287

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   gcccgcagcgcgcagccgaa 83
            ||||||||||||||||||||
Sbjct: 2914 gcccgcagcgcgcagccgaa 2895



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>emb|BX935588.1| Gallus gallus finished cDNA, clone ChEST84d7
          Length = 1530

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 100 gccgcccccgcgcctcgcgtcacc 123
           |||||||||||||| |||||||||
Sbjct: 57  gccgcccccgcgccgcgcgtcacc 34



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>dbj|AK102861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111I03, full
           insert sequence
          Length = 3066

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  cctcccaccgccgcccccgc 110
           ||||||||||||||||||||
Sbjct: 214 cctcccaccgccgcccccgc 195



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>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 135105

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     cgccgcccccgcgcctcgcg 118
              ||||||||||||||||||||
Sbjct: 126893 cgccgcccccgcgcctcgcg 126874



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>emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete
             sequence
          Length = 132775

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ccgccgcccccgcgcctcgc 117
             ||||||||||||||||||||
Sbjct: 22696 ccgccgcccccgcgcctcgc 22677



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>emb|AL845257.2| Mouse DNA sequence from clone RP23-280K4 on chromosome 2, complete
             sequence
          Length = 169281

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 133   ggggtttgctggtcggcggccgcggcgg 160
             |||||||||||  |||||||||||||||
Sbjct: 52461 ggggtttgctgcacggcggccgcggcgg 52488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,974,111
Number of Sequences: 3902068
Number of extensions: 10974111
Number of successful extensions: 97874
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97792
Number of HSP's gapped (non-prelim): 82
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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