ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28f04 |
|---|---|
| Clone Library Name | barley_pub |
>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9| Length = 736 Score = 30.8 bits (68), Expect = 1.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +2 Query: 176 PALARGSVGPRSRGGIGPDPPGSG 247 P +RG GP RGG GP P G G Sbjct: 338 PPGSRGGYGPPGRGGYGPGPNGRG 361
>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)| Length = 1000 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 2 SHPTQAPPHATQNPDPSASASPGIPSTVGR 91 +HPT+APPHA P A P P + R Sbjct: 7 AHPTRAPPHALPTPRAPPRAPPPSPRSARR 36
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1104 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = +2 Query: 2 SHPTQAPPHATQNPDPSASASPGIPSTVG 88 S PT PP A PDP + P P G Sbjct: 21 SDPTDQPPAAHAKPDPGSGGQPAGPGAAG 49
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -1 Query: 252 RRPDPGGSGPMPPRERGPTEPR 187 R+P GG GP PPR TE R Sbjct: 903 RKPARGGQGPPPPRRENRTETR 924
>CT174_HUMAN (Q5JPB2) Protein C20orf174| Length = 1082 Score = 28.9 bits (63), Expect = 5.5 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 2 SHPTQAPPHATQNPDPSASASP 67 SH T++P H+TQNP PS A P Sbjct: 566 SHSTRSP-HSTQNPFPSLKAEP 586
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/66 (33%), Positives = 23/66 (34%) Frame = -1 Query: 243 DPGGSGPMPPRERGPTEPRASAGTHEXXXXXXXXXXXXXXXXXXGCEGAGGRPTVEGIPG 64 +PGGSGPM P RGP P G G GRP G PG Sbjct: 199 EPGGSGPMGP--RGPPGPPGKNGDDGEA-------------------GKPGRPGERGPPG 237 Query: 63 EAEAEG 46 A G Sbjct: 238 PQGARG 243
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.5 bits (62), Expect = 7.2 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Frame = -1 Query: 249 RPDPGGSGPM-PPRERGPTEPRASAGTHEXXXXXXXXXXXXXXXXXXGCEGAGGRPTVEG 73 R +PGG+GP+ PP ERG R G + G +GA G P G Sbjct: 426 RGEPGGAGPIGPPGERGAPGNRGFPG-QDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG 484 Query: 72 IPGEAEAEG 46 PG A G Sbjct: 485 EPGLPGARG 493
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = +2 Query: 2 SHPTQAPPHATQNPDPSASASPGIPSTVG 88 S PT PP A PDP + P P G Sbjct: 21 SDPTGQPPAAHAKPDPGSGGQPAGPGAAG 49
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 28.5 bits (62), Expect = 7.2 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Frame = -1 Query: 249 RPDPGGSGPM-PPRERGPTEPRASAGTHEXXXXXXXXXXXXXXXXXXGCEGAGGRPTVEG 73 R +PGG+GP+ PP ERG R G + G +GA G P G Sbjct: 466 RGEPGGAGPIGPPGERGAPGNRGFPG-QDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG 524 Query: 72 IPGEAEAEG 46 PG A G Sbjct: 525 EPGLPGARG 533
>CD1B1_SHEEP (Q28565) T-cell surface glycoprotein CD1b-1 precursor (CD1b-1| antigen) (SCD1A25) Length = 333 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -1 Query: 327 TSTPNLYVAI-ASGDVAVYCTALWSWRR 247 TST ++VAI S + + C ALW WRR Sbjct: 299 TSTGLIFVAIIVSSLILLICLALWFWRR 326
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 Query: 102 GAGGRPTVEGIPGEAEAEG 46 G GG+P +G+PGEA A G Sbjct: 606 GEGGKPGDQGVPGEAGAPG 624
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 234 GSGPMPPRERGPTEPRASAGTHE 166 G+GP+PP + GP P A G E Sbjct: 443 GAGPVPPGKVGPATPSAQVGKWE 465
>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9| Length = 705 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%) Frame = +2 Query: 176 PALARGSVGP--RSRGGIGPDPPGSG 247 P RG GP R RGG GP P G G Sbjct: 350 PQNGRGGYGPPGRGRGGYGPPPRGYG 375
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 Query: 102 GAGGRPTVEGIPGEAEAEG 46 G GG+P +G+PGEA A G Sbjct: 490 GEGGKPGDQGVPGEAGAPG 508 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,269,779 Number of Sequences: 219361 Number of extensions: 1054527 Number of successful extensions: 5235 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4223 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5210 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
