ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28f03 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 84.0 bits (206), Expect = 8e-17 Identities = 44/62 (70%), Positives = 44/62 (70%) Frame = +3 Query: 207 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEGLHSRQLAVYGRETM 386 MLPRKREIVAGEVEDLQKK MA RGNEIDE LHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 387 KR 392 KR Sbjct: 61 KR 62
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 82.4 bits (202), Expect = 2e-16 Identities = 43/61 (70%), Positives = 43/61 (70%) Frame = +3 Query: 207 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEGLHSRQLAVYGRETM 386 MLPRKREIVAGEVEDLQKK MA RGNEIDE LHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 387 K 389 K Sbjct: 61 K 61
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = +3 Query: 330 EIDEGLHSRQLAVYGRETMKR 392 EIDE LHSRQLAVYGRETM+R Sbjct: 45 EIDEDLHSRQLAVYGRETMRR 65
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 36.2 bits (82), Expect = 0.019 Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 2/29 (6%) Frame = +3 Query: 312 MARRGNE--IDEGLHSRQLAVYGRETMKR 392 MA+ G+E IDEGL+SRQL V G E MKR Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKR 69
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 36.2 bits (82), Expect = 0.019 Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 2/29 (6%) Frame = +3 Query: 312 MARRGNE--IDEGLHSRQLAVYGRETMKR 392 MA+ G+E IDEGL+SRQL V G E MKR Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKR 69
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 32.7 bits (73), Expect = 0.21 Identities = 15/22 (68%), Positives = 17/22 (77%) Frame = +3 Query: 327 NEIDEGLHSRQLAVYGRETMKR 392 N IDEGL+SRQL V G E MK+ Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQ 34
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 32.0 bits (71), Expect = 0.37 Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Frame = +3 Query: 312 MARRGNE--IDEGLHSRQLAVYGRETMK 389 MA+ G+E IDE L+SRQL V G E MK Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMK 68
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +2 Query: 344 PAQSPARRLWPRDHEA 391 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +2 Query: 344 PAQSPARRLWPRDHEA 391 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDL+ + PG +PLPG G LLQV Sbjct: 21 LVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +3 Query: 330 EIDEGLHSRQLAVYGRETM 386 EIDE L+SRQL V G+E M Sbjct: 13 EIDESLYSRQLYVLGKEAM 31
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDLV + PG +PLPG G LLQV Sbjct: 22 LVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = -1 Query: 389 LHGLAAIDGELATVQALVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 L L + +A LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 73 VASGKEAGEGRSV*GFWDGTGGPD 2 V +GK G+G++V GF DGT D Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = -1 Query: 389 LHGLAAIDGELATVQALVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 L L + +A LVDL+ + PG LPLPG G LL V Sbjct: 3 LEALVPLAVIVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +3 Query: 9 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 101 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +3 Query: 9 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 101 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 258 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 48 SPASFPDATGESKVSRRSHALDLT 119 +P DATGE V+R SHA D+T Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195
>CP2DQ_MOUSE (Q8CIM7) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26)| Length = 500 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDLV + PG +P PG G LLQV Sbjct: 22 LVDLVHRRQRWTACYPPGPVPFPGLGNLLQV 52
>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5| Length = 187 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -1 Query: 200 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 30 R+ + D R R E D + R + V+ + GFA V G +RG V G Sbjct: 4 RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 389 LHGLAAIDGELATVQALVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 L L + +A LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDL+ + PG LPLPG G LL V Sbjct: 19 LVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDL+ + PG LPLPG G LL V Sbjct: 19 LVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DR_MESAU (Q9QYG6) Cytochrome P450 2D27 (EC 1.14.14.-) (CYPIID27)| Length = 500 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDL+ + PG +PLPG G LLQV Sbjct: 22 LVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>CP2DK_MESAU (Q9QYG5) Cytochrome P450 2D20 (EC 1.14.14.-) (CYPIID20)| Length = 500 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDL+ + PG +PLPG G LLQV Sbjct: 22 LVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>CP2DG_CAVPO (Q64403) Cytochrome P450 2D16 (EC 1.14.14.1) (CYPIID16)| Length = 500 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 341 LVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 LVDL+ + PG +P+PG G LLQV Sbjct: 22 LVDLMHRRQRWAARYPPGPVPVPGLGNLLQV 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,611,146 Number of Sequences: 219361 Number of extensions: 711919 Number of successful extensions: 2600 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2599 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
