ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28f02 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 124 bits (312), Expect = 9e-29 Identities = 66/84 (78%), Positives = 66/84 (78%) Frame = +3 Query: 207 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 386 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 387 KRLFGSNVLVSGLQGLGAEIAKTL 458 KRLFGSNVLVSGLQGLGAEIAK L Sbjct: 61 KRLFGSNVLVSGLQGLGAEIAKNL 84
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 122 bits (306), Expect = 5e-28 Identities = 65/84 (77%), Positives = 65/84 (77%) Frame = +3 Query: 207 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 386 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 387 KRLFGSNVLVSGLQGLGAEIAKTL 458 K LFGSNVLVSGLQGLGAEIAK L Sbjct: 61 KPLFGSNVLVSGLQGLGAEIAKNL 84
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 77.0 bits (188), Expect = 2e-14 Identities = 38/44 (86%), Positives = 41/44 (93%) Frame = +3 Query: 330 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTLS 461 EIDEDLHSRQLAVYGRETM+RLF S+VLVSGL GLGAEIAK L+ Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAEIAKNLA 88
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 59.3 bits (142), Expect = 5e-09 Identities = 33/51 (64%), Positives = 39/51 (76%), Gaps = 2/51 (3%) Frame = +3 Query: 312 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+GLG EIAK + Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNI 91
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 59.3 bits (142), Expect = 5e-09 Identities = 33/51 (64%), Positives = 39/51 (76%), Gaps = 2/51 (3%) Frame = +3 Query: 312 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+GLG EIAK + Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNI 91
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 57.4 bits (137), Expect = 2e-08 Identities = 32/51 (62%), Positives = 38/51 (74%), Gaps = 2/51 (3%) Frame = +3 Query: 312 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 MA+ G+E IDE L+SRQL V G E MK L S+VLVSGL+GLG EIAK + Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNI 91
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 55.8 bits (133), Expect = 5e-08 Identities = 27/42 (64%), Positives = 34/42 (80%) Frame = +3 Query: 333 IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 +DE+L+SRQL V G M+R+ G+ VLVSGLQGLGAE+AK L Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVSGLQGLGAEVAKNL 51
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 52.8 bits (125), Expect = 4e-07 Identities = 26/43 (60%), Positives = 33/43 (76%) Frame = +3 Query: 330 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 EIDE L+SRQL V G+E M ++ SNVL+ GL+GLG EIAK + Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNV 55
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 52.4 bits (124), Expect = 6e-07 Identities = 26/44 (59%), Positives = 32/44 (72%) Frame = +3 Query: 327 NEIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 N IDE L+SRQL V G E MK++ SNVL+ G +GLG EIAK + Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNV 56
>ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 350 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/37 (54%), Positives = 27/37 (72%) Frame = +3 Query: 348 HSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 + RQ+ ++G E KRL S VL+ G++GLGAEIAK L Sbjct: 23 YDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNL 59
>ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 346 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/37 (56%), Positives = 27/37 (72%) Frame = +3 Query: 348 HSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKTL 458 + RQ+ ++G E KRL S VL+ GL+GLGAEIAK L Sbjct: 19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNL 55
>UBA3_SCHPO (Q09765) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme E1 3) Length = 444 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +3 Query: 378 ETMKRLFGSNVLVSGLQGLGAEIAKTLS 461 ET+K F S +L+ G GLG EI K L+ Sbjct: 37 ETLKSAFSSKILIIGAGGLGCEILKDLA 64
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -1 Query: 395 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Frame = +2 Query: 344 PAQSPARRLWPRDHEA-----PLRLQRPRLWTSGSRCRD 445 P QSPARR W R H+A P Q +W RD Sbjct: 168 PGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRD 206
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Frame = +2 Query: 344 PAQSPARRLWPRDHEA-----PLRLQRPRLWTSGSRCRD 445 P QSPARR W R H+A P Q +W RD Sbjct: 168 PGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRD 206
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -1 Query: 344 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 344 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 389 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 395 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 395 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>HESA1_ANAVT (P46049) Protein hesA, heterocyst| Length = 267 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 348 HSRQLAV--YGRETMKRLFGSNVLVSGLQGLGAEIAKTLS 461 +SRQ+ + +G KRL + VLV+G+ GLG A L+ Sbjct: 12 YSRQMMLPNFGEAAQKRLKSATVLVTGVGGLGGTAALYLA 51
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 389 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 249 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,215,477 Number of Sequences: 219361 Number of extensions: 919591 Number of successful extensions: 3519 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3516 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
