ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28e08 |
|---|---|
| Clone Library Name | barley_pub |
>ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast precursor (EC| 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) Length = 1020 Score = 117 bits (294), Expect = 1e-26 Identities = 58/76 (76%), Positives = 65/76 (85%) Frame = +2 Query: 260 MESYLEENFGGVKGKNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKRGEAQAIKHXHHE 439 MESYL ENFG VK KNSS+EAL+RWRKLC +VKNPKRRFRFTANL KR EA+AI+ + E Sbjct: 1 MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSNQE 60 Query: 440 KLRVAVLVSKAALQLI 487 K RVAVLVS+AALQ I Sbjct: 61 KFRVAVLVSQAALQFI 76
>ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membrane-type (EC| 3.6.3.8) (Ca(2+)-ATPase isoform 2) Length = 1014 Score = 105 bits (261), Expect = 8e-23 Identities = 54/76 (71%), Positives = 60/76 (78%) Frame = +2 Query: 260 MESYLEENFGGVKGKNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKRGEAQAIKHXHHE 439 MESYL ENF VK K+SSEE L +WR LC VVKNPKRRFRFTANL KR EA A++ + E Sbjct: 1 MESYLNENFD-VKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQE 59 Query: 440 KLRVAVLVSKAALQLI 487 KLR+AVLVSKAA Q I Sbjct: 60 KLRIAVLVSKAAFQFI 75
>ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plasma| membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7) Length = 1015 Score = 104 bits (260), Expect = 1e-22 Identities = 54/76 (71%), Positives = 60/76 (78%) Frame = +2 Query: 260 MESYLEENFGGVKGKNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKRGEAQAIKHXHHE 439 MESYL NF VK K+SSEE L +WR LCSVVKNPKRRFRFTANL KR EA A++ + E Sbjct: 1 MESYLNSNFD-VKAKHSSEEVLEKWRNLCSVVKNPKRRFRFTANLSKRYEAAAMRRTNQE 59 Query: 440 KLRVAVLVSKAALQLI 487 KLR+AVLVSKAA Q I Sbjct: 60 KLRIAVLVSKAAFQFI 75
>ACA4_ARATH (O22218) Calcium-transporting ATPase 4, plasma membrane-type (EC| 3.6.3.8) (Ca(2+)-ATPase isoform 4) Length = 1030 Score = 60.8 bits (146), Expect = 2e-09 Identities = 33/65 (50%), Positives = 40/65 (61%) Frame = +2 Query: 293 VKGKNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKRGEAQAIKHXHHEKLRVAVLVSKA 472 V+ KN S EA +RWR S+VKN RRFR +LDK + + KH EK+RVA V KA Sbjct: 10 VEAKNPSLEARQRWRSSVSIVKNRTRRFRNIRDLDKLADYENKKHQIQEKIRVAFFVQKA 69 Query: 473 ALQLI 487 AL I Sbjct: 70 ALHFI 74
>ACA11_ARATH (Q9M2L4) Putative calcium-transporting ATPase 11, plasma| membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11) Length = 1025 Score = 56.2 bits (134), Expect = 5e-08 Identities = 31/65 (47%), Positives = 37/65 (56%) Frame = +2 Query: 293 VKGKNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKRGEAQAIKHXHHEKLRVAVLVSKA 472 V KN S EA +RWR +VKN RRFR +NLDK E + + EK+RV V KA Sbjct: 10 VASKNPSLEARQRWRSSVGLVKNRARRFRMISNLDKLAENEKKRCQIQEKIRVVFYVQKA 69 Query: 473 ALQLI 487 A Q I Sbjct: 70 AFQFI 74
>ACA9_ARATH (Q9LU41) Putative calcium-transporting ATPase 9, plasma| membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) Length = 1073 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Frame = +2 Query: 302 KNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKR---GEAQAIKHXHHEKLRVAVLVSKA 472 KN+S E+LRRWR+ ++V N RRFR+T +L+K + + H + +R A+L A Sbjct: 38 KNASVESLRRWRQ-AALVLNASRRFRYTLDLNKEEHYDNRRRMIRAHAQVIRAALLFKLA 96 Query: 473 ALQLI 487 Q I Sbjct: 97 GEQQI 101
>ACA10_ARATH (Q9SZR1) Putative calcium-transporting ATPase 10, plasma| membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10) Length = 1069 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Frame = +2 Query: 209 GEGARSPPAGEGGREVGMESYLEEN---FGGVKGKNSSEEALRRWRKLCSVVKNPKRRFR 379 G+ SP + E G S+ E F KN+ E LRRWR+ ++V N RRFR Sbjct: 3 GQFNNSPRGEDKDVEAGTSSFTEYEDSPFDIASTKNAPVERLRRWRQ-AALVLNASRRFR 61 Query: 380 FTANLDKRGEAQAI---KHXHHEKLRVAVLVSKAA 475 +T +L + + + + H + +R A L AA Sbjct: 62 YTLDLKREEDKKQMLRKMRAHAQAIRAAHLFKAAA 96
>ACA8_ARATH (Q9LF79) Calcium-transporting ATPase 8, plasma membrane-type (EC| 3.6.3.8) (Ca(2+)-ATPase isoform 8) Length = 1074 Score = 37.7 bits (86), Expect = 0.017 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +2 Query: 293 VKGKNSSEEALRRWRKLCSVVKNPKRRFRFTANLDKRGEAQAIK 424 + KN+S E L++WRK ++V N RRFR+T +L K E + ++ Sbjct: 34 IPSKNASIERLQQWRK-AALVLNASRRFRYTLDLKKEQETREMR 76
>ITB6_MOUSE (Q9Z0T9) Integrin beta-6 precursor| Length = 787 Score = 34.3 bits (77), Expect = 0.18 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGD 87 GL+CG++G+C CG C C D Sbjct: 549 GLLCGDNGDCDCGECVCRD 567 Score = 30.0 bits (66), Expect = 3.5 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGC 93 G++C G+CVCG+C C Sbjct: 588 GVLCSGRGDCVCGKCVC 604
>PAT3_CAEEL (Q27874) Integrin beta pat-3 precursor| Length = 809 Score = 33.5 bits (75), Expect = 0.31 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGD 87 G +C GEC+CGRC C D Sbjct: 614 GKICNGKGECICGRCRCFD 632 Score = 29.3 bits (64), Expect = 5.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 137 VCGEDGECVCGRCGC 93 +C E GEC CG+C C Sbjct: 577 ICAEHGECNCGKCIC 591
>ITB6_CAVPO (P18563) Integrin beta-6 (Fragment)| Length = 577 Score = 33.1 bits (74), Expect = 0.41 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGC 93 GL+CG++G+C CG C C Sbjct: 408 GLLCGDNGDCECGECVC 424 Score = 29.3 bits (64), Expect = 5.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGC 93 G +C G+CVCG+C C Sbjct: 447 GTLCSGRGDCVCGKCVC 463
>ITB8_RABIT (P26013) Integrin beta-8 precursor| Length = 768 Score = 32.7 bits (73), Expect = 0.53 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGD 87 G VC G CVCGRC C D Sbjct: 598 GQVCSGRGTCVCGRCECSD 616
>ITB1_BOVIN (P53712) Integrin beta-1 (Fibronectin receptor beta subunit)| (Integrin VLA-4 beta subunit) (CD29 antigen) (Fragment) Length = 773 Score = 32.3 bits (72), Expect = 0.70 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +GECVCG+C C NE+ Sbjct: 501 ICSNNGECVCGQCVCRKRDNTNEI 524
>ITB1_RAT (P49134) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 799 Score = 32.3 bits (72), Expect = 0.70 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +GECVCG+C C NE+ Sbjct: 525 ICSNNGECVCGQCVCRKRENTNEI 548
>ITB1_MOUSE (P09055) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 32.3 bits (72), Expect = 0.70 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +GECVCG+C C NE+ Sbjct: 524 ICSNNGECVCGQCVCRKRDNTNEI 547
>ITB1_HUMAN (P05556) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 32.3 bits (72), Expect = 0.70 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +GECVCG+C C NE+ Sbjct: 524 ICSNNGECVCGQCVCRKRDNTNEI 547
>ITB1_FELCA (P53713) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 32.3 bits (72), Expect = 0.70 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +GECVCG+C C NE+ Sbjct: 524 ICSNNGECVCGQCVCRKRDNTNEI 547
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 32.0 bits (71), Expect = 0.91 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGD 87 G VC G CVCGRC C D Sbjct: 598 GQVCSGRGTCVCGRCECTD 616 Score = 29.3 bits (64), Expect = 5.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSL 78 VC G CVCG+C C + L Sbjct: 519 VCSGRGVCVCGKCSCHKIKL 538
>ITB5_HUMAN (P18084) Integrin beta-5 precursor| Length = 799 Score = 32.0 bits (71), Expect = 0.91 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGDLSLANEM 66 G +C E G C+CG+C C + EM Sbjct: 599 GQICSERGHCLCGQCQCTEPGAFGEM 624
>ITB1_CHICK (P07228) Integrin beta-1 precursor (CSAT antigen) (JG22 antigen)| (RGD-receptor) Length = 803 Score = 32.0 bits (71), Expect = 0.91 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +GEC+CG+C C NE+ Sbjct: 529 ICSNNGECICGQCVCKKRENTNEV 552
>ITB5_PAPCY (Q07441) Integrin beta-5 (Fragment)| Length = 655 Score = 32.0 bits (71), Expect = 0.91 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGDLSLANEM 66 G +C E G C+CG+C C + EM Sbjct: 455 GQICSERGHCLCGQCQCTEPGAFGEM 480
>ITB6_HUMAN (P18564) Integrin beta-6 precursor| Length = 788 Score = 31.2 bits (69), Expect = 1.6 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGC 93 GL+CG +G+C CG C C Sbjct: 549 GLLCGGNGDCDCGECVC 565 Score = 30.0 bits (66), Expect = 3.5 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGC 93 G++C G+CVCG+C C Sbjct: 588 GVLCSGRGDCVCGKCVC 604
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Frame = +3 Query: 30 DPTTPRASERASHLIGQAQVATPAAPAHTLPILPANQPNQRV-----NPGRLVRAGA 185 D T E + + P A H +P+LP QP V N G+L+R GA Sbjct: 730 DDHTKAQRENSPAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGKLIRTGA 786
>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| (Flamingo homolog 2) (hFmi2) Length = 3014 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/58 (32%), Positives = 23/58 (39%) Frame = +3 Query: 9 LRALCSFDPTTPRASERASHLIGQAQVATPAAPAHTLPILPANQPNQRVNPGRLVRAG 182 LR LC+ + R + A TP+A P LP N P R P R R G Sbjct: 181 LRLLCALRRAA--GAVRVGLALEAATAGTPSASPSPSPPLPPNLPEARAGPARRARRG 236
>ITB5_MOUSE (O70309) Integrin beta-5 precursor| Length = 798 Score = 30.4 bits (67), Expect = 2.7 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGC 93 G +C + G CVCG+C C Sbjct: 599 GQICSDRGRCVCGQCQC 615
>ITB1B_XENLA (P12607) Integrin beta-1-B precursor (Integrin beta-1*)| Length = 798 Score = 30.4 bits (67), Expect = 2.7 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +G+C+CG+C C NE+ Sbjct: 524 ICSNNGDCICGQCVCKKRDNPNEV 547
>ITB1A_XENLA (P12606) Integrin beta-1-A precursor| Length = 798 Score = 30.4 bits (67), Expect = 2.7 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 137 VCGEDGECVCGRCGCGDLSLANEM 66 +C +G+C+CG+C C NE+ Sbjct: 524 ICSNNGDCICGQCVCKKRDNPNEV 547
>PLIN_HUMAN (O60240) Perilipin (PERI) (Lipid droplet-associated protein)| Length = 522 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%) Frame = +3 Query: 42 PRASERASHLIG-------QAQVATPAAPAHTLPILPANQPNQRVN 158 PR S R++ G + +VATPAAP P +P +P +RV+ Sbjct: 452 PRRSLRSAQSPGAPPGPGLEDEVATPAAPRPGFPAVPREKPKRRVS 497
>FRZF_MYXXA (P31759) Protein methyltransferase frzF (EC 2.1.1.80)| Length = 593 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 72 IGQAQVATPAAPAHTLPILPANQPNQRVNPGRL 170 + + VA P +P+ TLP L A+ + V PGRL Sbjct: 329 VSASSVAAPGSPSVTLPALGASSSPRSVVPGRL 361
>ITB3_HUMAN (P05106) Integrin beta-3 precursor (Platelet membrane glycoprotein| IIIa) (GPIIIa) (CD61 antigen) Length = 788 Score = 29.6 bits (65), Expect = 4.5 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -1 Query: 137 VCGEDGECVCGRCGC 93 VC + GEC+CG+C C Sbjct: 520 VCSQRGECLCGQCVC 534
>IDD_HUMAN (P98153) Integral membrane protein DGCR2/IDD precursor| Length = 550 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +2 Query: 2 AVTSGALLV*PDDSASERAREPSHWPGSGRHTRS 103 A +S ALLV PD + S PG GRH+RS Sbjct: 511 ADSSSALLVPPDPAQSGSTPAAEALPGGGRHSRS 544
>RIMM_VIBCH (Q9KUF9) 16S rRNA-processing protein rimM| Length = 182 Score = 29.6 bits (65), Expect = 4.5 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +2 Query: 257 GMESYLEENFGGVKGKNSSEEALRRWRKLCSVVKNPKRRFRFTA-NLDKRGE 409 G E+ ++N V GK S +R W K+ S NP+ F ++ +D++GE Sbjct: 3 GKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGE 54
>ITB3_MOUSE (O54890) Integrin beta-3 precursor (Platelet membrane glycoprotein| IIIa) (GPIIIa) (CD61 antigen) Length = 787 Score = 29.3 bits (64), Expect = 5.9 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -1 Query: 137 VCGEDGECVCGRCGC 93 +C + GEC+CG+C C Sbjct: 519 ICSQRGECLCGQCVC 533
>3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)| Length = 601 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 91 PHPQRPHTH--SPSSPQTNPTSASIPAGSCAPG 183 P P RP PSS +++P + S+P GS +PG Sbjct: 480 PAPARPTMPPPQPSSTRSSPPAPSLPPGSVSPG 512
>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1822 Score = 28.9 bits (63), Expect = 7.7 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -1 Query: 143 GLVCGEDGECVCGRCGCGDLSL 78 G +C G C CGRC C SL Sbjct: 587 GGICNGRGHCECGRCHCHQQSL 608
>ITB7_HUMAN (P26010) Integrin beta-7 precursor| Length = 798 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/33 (39%), Positives = 14/33 (42%) Frame = -1 Query: 179 GAHEPAGIDALVGLVCGEDGECVCGRCGCGDLS 81 G P G G +C G C CGRC C S Sbjct: 526 GCRAPNG----TGPLCSGKGHCQCGRCSCSGQS 554
>ITB7_MOUSE (P26011) Integrin beta-7 precursor (Integrin beta-P) (M290 IEL| antigen) Length = 806 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/33 (39%), Positives = 14/33 (42%) Frame = -1 Query: 179 GAHEPAGIDALVGLVCGEDGECVCGRCGCGDLS 81 G P G G +C G C CGRC C S Sbjct: 526 GCRAPNG----TGPLCSGKGRCQCGRCSCSGQS 554
>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)| Length = 637 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +2 Query: 212 EGARSPPAGEGGREVGMESYLEENFGGVKGKNSSEEA 322 EGA P+GEG EE GG G+ + E+A Sbjct: 40 EGAAKAPSGEGAGAAAKAGATEEASGGRDGEGAGEQA 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.134 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,038,951 Number of Sequences: 219361 Number of extensions: 941176 Number of successful extensions: 4271 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4259 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
