ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28e07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 129 bits (323), Expect(2) = 5e-35 Identities = 63/83 (75%), Positives = 73/83 (87%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 +FGATV+DG+ E LG+GVTCQLISST VD NNG RGKVGAEA+LEQW L ++LP +TTGE Sbjct: 34 DFGATVIDGLGEFLGKGVTCQLISSTAVDPNNGNRGKVGAEASLEQW-LTSSLPSLTTGE 92 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 ++F VTFDW VDKLGVPGAIIVK Sbjct: 93 SRFGVTFDWDVDKLGVPGAIIVK 115 Score = 37.7 bits (86), Expect(2) = 5e-35 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALE 163 +GGI+ +TG + + LKG+VVLMRKN L+ Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLD 31
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 126 bits (317), Expect(2) = 9e-35 Identities = 59/82 (71%), Positives = 72/82 (87%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 +FGAT++DG+ E LG+GVTCQLISST VD +NGGRGKVGAEA LEQW+ T+LP +TTGE Sbjct: 35 DFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWV--TSLPSLTTGE 92 Query: 349 NKFAVTFDWSVDKLGVPGAIIV 414 +KF +TFDW V+KLGVPGAI+V Sbjct: 93 SKFGLTFDWEVEKLGVPGAIVV 114 Score = 39.3 bits (90), Expect(2) = 9e-35 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALE 163 +GG++ LTG + A LKG+VVLMRKN L+ Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLD 32
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 125 bits (314), Expect(3) = 2e-34 Identities = 58/83 (69%), Positives = 73/83 (87%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 +FGATV+DG++E LGRGVTCQL+SS+ VD NNG RG+VG EA+LEQWL T+LP +TTGE Sbjct: 33 DFGATVIDGISEFLGRGVTCQLVSSSLVDPNNGNRGRVGTEASLEQWL--TSLPSLTTGE 90 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 +KF VTF+W V+K+G+PGAIIVK Sbjct: 91 SKFGVTFEWEVEKMGIPGAIIVK 113 Score = 38.1 bits (87), Expect(3) = 2e-34 Identities = 19/30 (63%), Positives = 24/30 (80%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALE 163 +GGI+ LTG + A LKGS+VLMRKNAL+ Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALD 30 Score = 21.2 bits (43), Expect(3) = 2e-34 Identities = 7/10 (70%), Positives = 10/10 (100%) Frame = +3 Query: 417 DNHASEFFLR 446 +NHA+EFFL+ Sbjct: 114 NNHAAEFFLK 123
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 95.5 bits (236), Expect(2) = 2e-20 Identities = 46/83 (55%), Positives = 62/83 (74%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 +F A+++D V E+ G +TCQL+S+T D NN GRG VG+EANLEQ L T+LP ++ GE Sbjct: 33 DFTASLLDNVHEVFGNSITCQLVSATVADQNNEGRGIVGSEANLEQGL--TDLPSVSQGE 90 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 +K V F+W +DK GVPGAII+K Sbjct: 91 SKLTVRFNWEMDKHGVPGAIIIK 113 Score = 22.3 bits (46), Expect(2) = 2e-20 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALE 163 +GG+ LTG G +KG VLM + L+ Sbjct: 2 LGGLKDKLTGK-NGNKIKGLAVLMSRKLLD 30
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 78.6 bits (192), Expect(2) = 5e-17 Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLIS-STNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTG 345 N GA+V+DG+++LLG+ V+ QLIS S N D G GK+ A LE WL T++ IT G Sbjct: 35 NIGASVVDGISDLLGQKVSIQLISGSVNYD---GLEGKLSNPAYLESWL--TDITPITAG 89 Query: 346 ENKFAVTFDWSVDKLGVPGAIIVK 417 E+ F+VTFDW D+ GVPGA I+K Sbjct: 90 ESTFSVTFDWDRDEFGVPGAFIIK 113 Score = 27.7 bits (60), Expect(2) = 5e-17 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALE 163 +GGIV + G +KG V+LM+KN L+ Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLD 32
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 70.1 bits (170), Expect(2) = 2e-13 Identities = 34/83 (40%), Positives = 52/83 (62%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 +F A+ +D + E LG +T +L+SS D NG +GK+G A+LE W+ T + +T GE Sbjct: 37 DFNASFLDRLHEFLGNKITLRLVSSDVTDSENGSKGKLGKAAHLEDWI--TTITSLTAGE 94 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 + F VTFD+ D G PGA +++ Sbjct: 95 SAFKVTFDYETD-FGYPGAFLIR 116 Score = 23.9 bits (50), Expect(2) = 2e-13 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Frame = +2 Query: 95 LTGG---LRGAHLKGSVVLMRKNALE 163 LTGG +KG+VVLM+KN L+ Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLD 34
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 60.1 bits (144), Expect(2) = 2e-12 Identities = 35/83 (42%), Positives = 49/83 (59%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 + ++ D + E LG+ V+ QLISS D NG +GK A LE +LL L + GE Sbjct: 35 DLAGSLTDKIFEALGQKVSFQLISSVQSDPANGLQGKHSNPAYLENFLL--TLTPLAAGE 92 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 F VTFDW+ ++ GVPGA ++K Sbjct: 93 TAFGVTFDWN-EEFGVPGAFVIK 114 Score = 30.8 bits (68), Expect(2) = 2e-12 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 5/32 (15%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALE 163 ++ L GGL G H +KG+VV+M+KNAL+ Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALD 32
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 62.0 bits (149), Expect(2) = 8e-12 Identities = 35/83 (42%), Positives = 51/83 (61%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 N + +DG+T LGR V+ QLIS+T D N G+GKVG + LE L +LP + GE Sbjct: 49 NIIGSTLDGLTAFLGRSVSLQLISATKSDAN--GKGKVGKDTFLEGVL--ASLPTLGAGE 104 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 + F + F+W ++G+PGA +K Sbjct: 105 SAFNIHFEWD-HEMGIPGAFYIK 126 Score = 26.6 bits (57), Expect(2) = 8e-12 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%) Frame = +2 Query: 92 DLTGGLRGAH-LKGSVVLMRKNALE 163 ++TG L H ++G+VVLMRKN L+ Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLD 28
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 56.2 bits (134), Expect(2) = 3e-11 Identities = 32/83 (38%), Positives = 49/83 (59%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 N + +D +T LGR V QLIS+T N G+GKVG + LE ++ +LP + GE Sbjct: 53 NVVGSTLDNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLEGIIV--SLPTLGAGE 108 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 + F + F+W + +G+PGA +K Sbjct: 109 SAFNIQFEWD-ESMGIPGAFYIK 130 Score = 30.4 bits (67), Expect(2) = 3e-11 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 65 MFGVGGIVSDLTGGLRGAH-LKGSVVLMRKNALE 163 MF V G+ L G G H +KG+VVLMRKN L+ Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLD 32
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 55.5 bits (132), Expect(2) = 1e-10 Identities = 33/81 (40%), Positives = 50/81 (61%) Frame = +1 Query: 175 GATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENK 354 G+TV D +T LGR V+ QLIS+T D G+GK+G LE + ++LP + G++ Sbjct: 47 GSTV-DNLTAFLGRSVSLQLISATKPDAT--GKGKLGKATFLEG--IISSLPTLGAGQSA 101 Query: 355 FAVTFDWSVDKLGVPGAIIVK 417 F + F+W D +G+PGA +K Sbjct: 102 FKIHFEWD-DDMGIPGAFYIK 121 Score = 29.3 bits (64), Expect(2) = 1e-10 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Frame = +2 Query: 89 SDLTGGL-RGAHLKGSVVLMRKNALE 163 S +TG L RG +KG+VVLMRKN L+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLD 28
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 64.7 bits (156), Expect = 1e-10 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Frame = +1 Query: 169 NFGATVMDGVTELLGR--GVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITT 342 +F A+++DGV +LG GV +L+S+T D +NGGRGK+G A+LE+ L + Sbjct: 39 DFHASLLDGVHNILGHKEGVAFRLVSATARDPSNGGRGKLGKPAHLEE--LVVTMKSTAA 96 Query: 343 GENKFAVTFDWSVDKLGVPGAIIV 414 GE+ F V F+W + G+PGA++V Sbjct: 97 GESVFRVAFEWD-ESQGIPGAVVV 119
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 53.1 bits (126), Expect(2) = 6e-10 Identities = 31/79 (39%), Positives = 47/79 (59%) Frame = +1 Query: 181 TVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFA 360 + +D +T LGR V+ QLIS+T D N G+GK+G LE + T+LP + G++ F Sbjct: 45 STLDTLTAFLGRPVSLQLISATKADAN--GKGKLGKATFLEG--IITSLPTLGAGQSAFK 100 Query: 361 VTFDWSVDKLGVPGAIIVK 417 + F+W D G+ GA +K Sbjct: 101 INFEWD-DGSGILGAFYIK 118 Score = 28.9 bits (63), Expect(2) = 6e-10 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Frame = +2 Query: 95 LTGGL--RGAHLKGSVVLMRKNAL 160 + GGL RG +KG+VVLMRKN L Sbjct: 1 MLGGLLHRGHKIKGTVVLMRKNVL 24
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 57.0 bits (136), Expect(2) = 1e-09 Identities = 32/83 (38%), Positives = 49/83 (59%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 N + +D + LGR V+ QLIS+T D + G+GKVG + LE + T+LP + GE Sbjct: 23 NPDGSAVDNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTFLEG--INTSLPTLGAGE 78 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 + F + F+W +G+PGA +K Sbjct: 79 SAFNIHFEWD-GSMGIPGAFYIK 100 Score = 24.3 bits (51), Expect(2) = 1e-09 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +2 Query: 113 GAHLKGSVVLMRKNALE 163 G +KG+VVLM KN LE Sbjct: 5 GHKIKGTVVLMPKNELE 21
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 56.2 bits (134), Expect(2) = 1e-09 Identities = 33/78 (42%), Positives = 46/78 (58%) Frame = +1 Query: 184 VMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 363 V+D T LGR ++ QLIS+T D G GKVG E LE+ LPT LP + ++ F++ Sbjct: 54 VIDTATSFLGRNISMQLISATQTD--GSGNGKVGKEVYLEKH-LPT-LPTLGARQDAFSI 109 Query: 364 TFDWSVDKLGVPGAIIVK 417 F+W G+PGA +K Sbjct: 110 FFEWDA-SFGIPGAFYIK 126 Score = 24.6 bits (52), Expect(2) = 1e-09 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALE 163 +G +KG+VVLM KN L+ Sbjct: 7 KGQKIKGTVVLMPKNVLD 24
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 50.4 bits (119), Expect(2) = 1e-08 Identities = 30/83 (36%), Positives = 48/83 (57%) Frame = +1 Query: 169 NFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGE 348 + +++D T LGR V +LIS+T D + G+GKV EA LE L T++P + + Sbjct: 48 SIAGSIIDTATAFLGRSVRLRLISATVADAS--GKGKVSKEAFLEGLL--TSIPTLGDKQ 103 Query: 349 NKFAVTFDWSVDKLGVPGAIIVK 417 + F+V F+W +G PGA ++ Sbjct: 104 SAFSVHFEWD-SNMGTPGAFYIE 125 Score = 27.3 bits (59), Expect(2) = 1e-08 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALE 163 RG LKG+V+LM+KN L+ Sbjct: 8 RGQKLKGTVILMQKNVLD 25
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 54.7 bits (130), Expect = 1e-07 Identities = 33/74 (44%), Positives = 43/74 (58%) Frame = +1 Query: 196 VTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDW 375 + ++LG+ V+ QLISS D NG +GK A LE L T P E F VTFDW Sbjct: 44 IFDVLGQKVSFQLISSVQGDPTNGLQGKHSNPAYLENSLF-TLTPLTAGSETAFGVTFDW 102 Query: 376 SVDKLGVPGAIIVK 417 + ++ GVPGA I+K Sbjct: 103 N-EEFGVPGAFIIK 115
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 47.8 bits (112), Expect(2) = 3e-07 Identities = 26/66 (39%), Positives = 37/66 (56%) Frame = +1 Query: 220 VTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVP 399 ++ QLIS+T D GG+GK+G NL + LP + GE + V F+W D G+P Sbjct: 56 ISIQLISATKAD---GGKGKIGKSTNLRGKI---TLPTLGAGEQAYDVNFEWDSD-FGIP 108 Query: 400 GAIIVK 417 GA +K Sbjct: 109 GAFYIK 114 Score = 25.0 bits (53), Expect(2) = 3e-07 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = +2 Query: 104 GLRGAHLKGSVVLMRKNALE 163 G +G +KG++V+M+KN L+ Sbjct: 5 GQKGQKIKGTMVVMQKNVLD 24
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 47.8 bits (112), Expect(2) = 5e-07 Identities = 28/78 (35%), Positives = 43/78 (55%) Frame = +1 Query: 184 VMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 363 ++DG T + R + QLIS+T D G GKVG + LE+ L +LP + ++ F V Sbjct: 54 IVDGATAIFSRNIAIQLISATKTD--GLGNGKVGKQTFLEKHL--PSLPNLGDRQDAFNV 109 Query: 364 TFDWSVDKLGVPGAIIVK 417 F+W + G+P A +K Sbjct: 110 YFEWD-ENFGIPEAFYIK 126 Score = 24.3 bits (51), Expect(2) = 5e-07 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALE 163 RG +KG+VVLM KN + Sbjct: 7 RGHKIKGTVVLMTKNVFD 24
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = -3 Query: 446 SEEELGGVVVLTMMAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRP 267 +++++ +V +APGTP + ++S++T + HCS + P P Sbjct: 2515 AQKQVELIVDTGTVAPGTPQVQVEESELT--------LEAGHTATLHCSATGNPP----P 2562 Query: 266 PLLWSTLVELMSWQ 225 + WS L + WQ Sbjct: 2563 TIHWSKLRAPLPWQ 2576
>PEPP2_HUMAN (Q9BQY4) Paired-like homeobox protein PEPP-2 (Testis homeobox gene| 1) Length = 288 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -3 Query: 419 VLTMMAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFA-SAPTFPRPPL 261 +L MA G P + T +TA LF + + F SH S P FP P L Sbjct: 201 MLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSL 254
>TLP_PRUAV (P50694) Thaumatin-like protein precursor| Length = 245 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 10/51 (19%) Frame = -3 Query: 410 MMAPGT------PSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 288 M+ PGT P LST S+ + L +PV NGRF R+ CS AS Sbjct: 35 MVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 85
>SIPD_SALTY (Q56026) Cell invasion protein sipD (Salmonella invasion protein D)| Length = 343 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Frame = +1 Query: 229 QLISSTNVDHNNGGRG-KVGAEANLEQWLLPTNLP--FITTGENKFAVTFDWS------- 378 Q+ S+T + G G KV EA QWL NLP + + + + VT D + Sbjct: 207 QINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQ 266 Query: 379 -VDKLGVPG 402 +D LG PG Sbjct: 267 DIDGLGAPG 275
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 115 APEAPRQVAHDAADAKHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,922,337 Number of Sequences: 219361 Number of extensions: 828514 Number of successful extensions: 3103 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3082 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
