ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28e07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 710 bits (358), Expect = 0.0 Identities = 446/465 (95%), Gaps = 9/465 (1%) Strand = Plus / Plus Query: 1 acacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgagc 60 |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 4 acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc 60 Query: 61 gaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccca 120 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 61 -aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccca 119 Query: 121 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgag--cagccaacttcggcg 178 |||||||||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct: 120 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacga-cttcggcg 178 Query: 179 ccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatca 238 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 cccacgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatca 238 Query: 239 gctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 gctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacc 298 Query: 299 tggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcg 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 tggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcg 358 Query: 359 ccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcatcgtcaag- 417 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 359 ccgtcaccttcgactggtcggtggacaagctgggggtgccgggggccatcatcgtcaaga 418 Query: 418 acaaccacgcctccgagttcttcctc-agaccatcaccctcgaca 461 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 419 acaaccacgcctccgagttcttcctcaagaccatcaccctcgaca 463
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 178 bits (90), Expect = 1e-41 Identities = 244/293 (83%), Gaps = 8/293 (2%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||| | ||| || ||| |||| |||||||| || |||||||||| Sbjct: 101 acttcggcgccaccgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgcc 160 Query: 230 agctcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgg 289 ||||||||||||||||| ||||||| ||||||||| |||||| ||| || |||| Sbjct: 161 agctcatcagctccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcgg 220 Query: 290 aggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgaga 349 |||||||||||||||||||||| ||||| |||||||| | || ||||||||| Sbjct: 221 aggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggcgagt 274 Query: 350 acaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatca 409 |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| || Sbjct: 275 ccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcg 334 Query: 410 tcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctcgac 460 ||||||||| |||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 335 tcgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgac 387
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 178 bits (90), Expect = 1e-41 Identities = 244/293 (83%), Gaps = 8/293 (2%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||| | ||| || ||| |||| |||||||| || |||||||||| Sbjct: 163 acttcggcgccaccgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgcc 222 Query: 230 agctcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgg 289 ||||||||||||||||| ||||||| ||||||||| |||||| ||| || |||| Sbjct: 223 agctcatcagctccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcgg 282 Query: 290 aggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgaga 349 |||||||||||||||||||||| ||||| |||||||| | || ||||||||| Sbjct: 283 aggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggcgagt 336 Query: 350 acaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatca 409 |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| || Sbjct: 337 ccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcg 396 Query: 410 tcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctcgac 460 ||||||||| |||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 397 tcgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgac 449
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 159 bits (80), Expect = 1e-35 Identities = 171/199 (85%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgagcagcca--act 172 ||||| ||||||||||||| |||||||||||||||||||||| ||||| || | | ||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcga-catcaacgact 100 Query: 173 tcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagc 232 |||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 101 tcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagc 160 Query: 233 tcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggagg 292 || |||||||| || |||||||| |||||| || | |||| |||||| |||||| Sbjct: 161 tcgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggagg 220 Query: 293 cgaacctggagcagtggct 311 ||| ||||||||||||||| Sbjct: 221 cgagcctggagcagtggct 239 Score = 87.7 bits (44), Expect = 3e-14 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctc 457 ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 381 Query: 458 gaca 461 |||| Sbjct: 382 gaca 385
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 159 bits (80), Expect = 1e-35 Identities = 171/199 (85%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgagcagcca--act 172 ||||| ||||||||||||| |||||||||||||||||||||| ||||| || | | ||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcga-catcaacgact 215 Query: 173 tcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagc 232 |||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 216 tcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagc 275 Query: 233 tcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggagg 292 || |||||||| || |||||||| |||||| || | |||| |||||| |||||| Sbjct: 276 tcgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggagg 335 Query: 293 cgaacctggagcagtggct 311 ||| ||||||||||||||| Sbjct: 336 cgagcctggagcagtggct 354 Score = 87.7 bits (44), Expect = 3e-14 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctc 457 ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 496 Query: 458 gaca 461 |||| Sbjct: 497 gaca 500
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 1e-31 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgagcagcca--act 172 ||||| ||||||||||||| |||||||||||||||||||||| ||||| || | | ||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcga-catcaacgact 30023359 Query: 173 tcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagc 232 |||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 30023360 tcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagc 30023419 Query: 233 tcatcagctccaccaacgtcgacc 256 || |||||||| || |||||||| Sbjct: 30023420 tcgtcagctcctccctcgtcgacc 30023443 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 27798806 acttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgcc 27798865 Query: 230 agctcatcagctccaccaacgtcgacc 256 ||||||||||||||||| |||||||| Sbjct: 27798866 agctcatcagctccaccgccgtcgacc 27798892 Score = 87.7 bits (44), Expect = 3e-14 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctc 457 ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30023718 Query: 458 gaca 461 |||| Sbjct: 30023719 gaca 30023722 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/81 (87%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaag-acaaccacgcctccgagttcttc 440 |||||||| || |||||||| ||||||||||||||| || ||||| | |||||||||| Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27799472 Query: 441 ctc-agaccatcaccctcgac 460 ||| ||||||||||||||||| Sbjct: 27799473 ctcaagaccatcaccctcgac 27799493 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 145 bits (73), Expect = 1e-31 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Minus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgagcagcca--act 172 ||||| ||||||||||||| |||||||||||||||||||||| ||||| || | | ||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcga-catcaacgact 84392 Query: 173 tcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagc 232 |||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 84391 tcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagc 84332 Query: 233 tcatcagctccaccaacgtcgacc 256 || |||||||| || |||||||| Sbjct: 84331 tcgtcagctcctccctcgtcgacc 84308 Score = 87.7 bits (44), Expect = 3e-14 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 400 ggcgccatcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctc 457 ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 84033 Query: 458 gaca 461 |||| Sbjct: 84032 gaca 84029 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 1e-31 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgagcagcca--act 172 ||||| ||||||||||||| |||||||||||||||||||||| ||||| || | | ||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcga-catcaacgact 30114781 Query: 173 tcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagc 232 |||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 30114782 tcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagc 30114841 Query: 233 tcatcagctccaccaacgtcgacc 256 || |||||||| || |||||||| Sbjct: 30114842 tcgtcagctcctccctcgtcgacc 30114865 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 27890130 acttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgcc 27890189 Query: 230 agctcatcagctccaccaacgtcgacc 256 ||||||||||||||||| |||||||| Sbjct: 27890190 agctcatcagctccaccgccgtcgacc 27890216 Score = 87.7 bits (44), Expect = 3e-14 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctc 457 ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30115140 Query: 458 gaca 461 |||| Sbjct: 30115141 gaca 30115144 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/81 (87%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaag-acaaccacgcctccgagttcttc 440 |||||||| || |||||||| ||||||||||||||| || ||||| | |||||||||| Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27890796 Query: 441 ctc-agaccatcaccctcgac 460 ||| ||||||||||||||||| Sbjct: 27890797 ctcaagaccatcaccctcgac 27890817 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 143 bits (72), Expect = 6e-31 Identities = 169/199 (84%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgagcagcca--act 172 ||||| ||||||||||||| |||||||||||||||||||||| ||||| || | | ||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcga-catcaacgact 197 Query: 173 tcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagc 232 |||||||||||||||| || || || ||||| ||||||||||||||||||||||||||| Sbjct: 198 tcggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagc 257 Query: 233 tcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggagg 292 || |||||||| || |||||||| |||||| || | |||| |||||| |||||| Sbjct: 258 tcgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggagg 317 Query: 293 cgaacctggagcagtggct 311 ||| ||||||||||||||| Sbjct: 318 cgagcctggagcagtggct 336 Score = 87.7 bits (44), Expect = 3e-14 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctc 457 ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 478 Query: 458 gaca 461 |||| Sbjct: 479 gaca 482
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 |||||||||||||| |||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 172 acttcggcgccaccatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgcc 231 Query: 230 agctcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgg 289 |||| |||||||||||| ||||||||| ||||||| || ||||||||||||||||||| Sbjct: 232 agcttatcagctccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcgg 291 Query: 290 aggcgaacctggagcagtgg 309 ||||| | |||||||||||| Sbjct: 292 aggcggagctggagcagtgg 311 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 410 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 411 cgtcaa 416 |||||| Sbjct: 407 cgtcaa 412
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 131 bits (66), Expect = 2e-27 Identities = 123/142 (86%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 101 acttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgcc 160 Query: 230 agctcatcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgg 289 ||||||||||||||||| |||||||| |||||||| || ||||||||||| |||| Sbjct: 161 agctcatcagctccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcgg 220 Query: 290 aggcgaacctggagcagtggct 311 |||||| ||||||||||||||| Sbjct: 221 aggcgagcctggagcagtggct 242 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/81 (87%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaag-acaaccacgcctccgagttcttc 440 |||||||| || |||||||| ||||||||||||||| || ||||| | |||||||||| Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 369 Query: 441 ctc-agaccatcaccctcgac 460 ||| ||||||||||||||||| Sbjct: 370 ctcaagaccatcaccctcgac 390
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 201 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 260 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 261 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263 Score = 119 bits (60), Expect = 8e-24 Identities = 104/116 (89%), Gaps = 2/116 (1%) Strand = Plus / Plus Query: 344 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcg 403 |||||||| ||||| |||||||||||||||| |||||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 404 ccatcatcgtcaag-acaaccacgcctccgagttcttcctc-agaccatcaccctc 457 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 405
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 123 bits (62), Expect = 5e-25 Identities = 150/177 (84%), Gaps = 8/177 (4%) Strand = Plus / Plus Query: 286 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 345 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 346 gagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgcc 405 ||| |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggcc 1058 Query: 406 atcatcgtcaaga-caaccacgcctccgagttcttcctc-agaccatcaccctcgac 460 || ||||||||| |||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 1059 gtcgtcgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgac 1115 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||| | ||| || ||| |||| |||||||| || |||||||||| Sbjct: 249 acttcggcgccaccgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgcc 308 Query: 230 agctcatcagctccaccaacgtcgac 255 ||||||||||||||||| ||||||| Sbjct: 309 agctcatcagctccaccctcgtcgac 334
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 107 bits (54), Expect = 3e-20 Identities = 107/122 (87%), Gaps = 2/122 (1%) Strand = Plus / Plus Query: 341 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgg 400 |||||||| || ||||| |||||||||||||||| |||||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 401 gcgccatcatcgtcaag-acaaccacgcctccgagttcttcctc-agaccatcaccctcg 458 ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagttcttcctcaagaccatcaccatcg 2927 Query: 459 ac 460 || Sbjct: 2928 ac 2929 Score = 79.8 bits (40), Expect = 7e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 185 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 244 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 245 ccaacgtcgacc 256 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 271 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 316 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 42936 acttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgcc 42995 Query: 230 agctcatcagctccaccaacgtcgacc 256 ||||||||||||||||| |||||||| Sbjct: 42996 agctcatcagctccaccgccgtcgacc 43022 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/81 (87%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaag-acaaccacgcctccgagttcttc 440 |||||||| || |||||||| ||||||||||||||| || ||||| | |||||||||| Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 43602 Query: 441 ctc-agaccatcaccctcgac 460 ||| ||||||||||||||||| Sbjct: 43603 ctcaagaccatcaccctcgac 43623 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 15087 acttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgcc 15028 Query: 230 agctcatcagctccaccaacgtcgacc 256 ||||||||||||||||| |||||||| Sbjct: 15027 agctcatcagctccaccgccgtcgacc 15001 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/81 (87%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaag-acaaccacgcctccgagttcttc 440 |||||||| || |||||||| ||||||||||||||| || ||||| | |||||||||| Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 14421 Query: 441 ctc-agaccatcaccctcgac 460 ||| ||||||||||||||||| Sbjct: 14420 ctcaagaccatcaccctcgac 14400 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 ||||||||||||||||| | | ||||| ||||| |||||||||||||||||||||||| Sbjct: 26 acttcggcgccaccgtcctcgggcgcgtctccgagttcctcggccgcggcgtcacctgcc 85 Query: 230 agctcatcagctcc 243 ||||| |||||||| Sbjct: 86 agctcgtcagctcc 99
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 410 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 411 cgtcaa 416 |||||| Sbjct: 4400 cgtcaa 4405 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 170 acttcggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgcc 229 |||||||||||||| |||| |||||| || |||| |||||||| ||||||||||||| Sbjct: 3615 acttcggcgccaccatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgcc 3674 Query: 230 agctcatcagctccacc 246 |||| |||||||||||| Sbjct: 3675 agcttatcagctccacc 3691 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 260 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 309 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 cggcgccaccgtcatggacggcgtcaccg 202 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 357 cgccgtcaccttcgactggtcggtggac 384 ||||| ||||||||| |||||||||||| Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gctcctgccgacgaacctgc 328 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 acctgccgttcatcaccaccggcg 346 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 acctgccgttcatcaccaccggcg 346 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ggtgccgggcgccatcatcg 412 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agctcctcggccgcggcgtc 222 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 agctcatcagctccaccaac 249 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 caccaacgtcgaccacaaca 262 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gccgttcatcaccaccggcg 346 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>gb|AC159716.6| Mus musculus 6 BAC RP23-80P15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 239739 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cttcctcagaccatcaccct 456 |||||||||||||||||||| Sbjct: 38382 cttcctcagaccatcaccct 38363
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 acctggagcagtggctcctg 315 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 tcggcgccaccgtcatggacggcg 196 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 189 ggacggcgtcaccgagctcctcggccgcggcg 220 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756
>gb|AY561867.1| Chondrilla australiensis 28S large subunit ribosomal RNA gene, partial sequence Length = 1021 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccaacttcggcgccaccgtc 186 |||||||||||||||||||| Sbjct: 566 ccaacttcggcgccaccgtc 547 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,699,519 Number of Sequences: 3902068 Number of extensions: 2699519 Number of successful extensions: 58026 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56667 Number of HSP's gapped (non-prelim): 1324 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
