ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y080_MYCPN (P75613) Hypothetical protein MG064 homolog (R02_orf1... 29 6.3
2RL15_PSEPK (Q88QL6) 50S ribosomal protein L15 28 8.2
3RL15_PSEF5 (Q4K552) 50S ribosomal protein L15 28 8.2

>Y080_MYCPN (P75613) Hypothetical protein MG064 homolog (R02_orf1386)|
          Length = 1386

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262 RRLAAYLTAPAVESVIARLPSWRHALDFF-RWA 357
           R  +++LT P    ++ARLP+  H LD   +WA
Sbjct: 440 RTASSFLTNPTETGIVARLPNLNHDLDVINQWA 472



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>RL15_PSEPK (Q88QL6) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 99  ESHRDGRILRSGVGAEGGRYAVGDTGGLSG 10
           E HR GR + SG+G  GGR   G T    G
Sbjct: 15  EKHRPGRGIGSGLGKTGGRGHKGQTSRSGG 44



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>RL15_PSEF5 (Q4K552) 50S ribosomal protein L15|
          Length = 144

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 99  ESHRDGRILRSGVGAEGGRYAVGDTGGLSG 10
           E HR GR + SG+G  GGR   G T    G
Sbjct: 15  EKHRPGRGIGSGLGKTGGRGHKGQTSRSGG 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,979,306
Number of Sequences: 219361
Number of extensions: 591256
Number of successful extensions: 2153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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