>MMP9_HUMAN (P14780) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB) [Contains: 67 kDa matrix
           metalloproteinase-9; 82 kDa matrix metalloproteinase-9]
          Length = 707

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 21  IRKITSAQIQPDPIP--TRIPRPVADPTVHPTAP 116
           IR +   + +P+P P  T  P+P A PTV PT P
Sbjct: 439 IRHLYGPRPEPEPRPPTTTTPQPTAPPTVCPTGP 472

>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 1) (OsGME-1)
          Length = 378

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 193 LTICMIGAGGSIGSHLCEKLMAETQHVV 276
           L I + GAGG IGSH+  +L +E  +++
Sbjct: 30  LRISITGAGGFIGSHIARRLKSEGHYII 57

>MUTS_THIDA (Q3SJP0) DNA mismatch repair protein mutS|
          Length = 850

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 3   HRHRRRIRKITSAQIQPDP----IPTRIPRPVADPTVHP 107
           H  RRR+R++  AQ+QP P        +PR  A P  HP
Sbjct: 781 HAARRRLRELEDAQLQPGPQGDLFAAHLPRDEAPP--HP 817

>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  SAQIQPDPIPTRIPRPVADPTVHPTAP 116
           +A + P P   + PRPVA   V P+AP
Sbjct: 161 AAPVTPPPAAPQAPRPVAQAPVAPSAP 187

>CAPD_STAAU (P39853) Capsular polysaccharide biosynthesis protein capD|
          Length = 599

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196 TICMIGAGGSIGSHLCEKLMA-ETQHVVL 279
           TI + GAGGSIGS +C ++   + Q ++L
Sbjct: 283 TILVTGAGGSIGSEICRQVSKFDPQKIIL 311

>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 2)
          Length = 371

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 193 LTICMIGAGGSIGSHLCEKLMAETQHVV 276
           L I + GAGG I SH+  +L +E  +++
Sbjct: 23  LRISITGAGGFIASHIARRLKSEGHYII 50

>XKR4_MOUSE (Q5GH67) XK-related protein 4|
          Length = 647

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 139 ESMASGGRVDLDGGAVAPLTICMIGAGGSIGS 234
           ++ A+GG    DGG  +    C  G+GGS GS
Sbjct: 46  DTEAAGGGCCPDGGGCSRCCCCCAGSGGSAGS 77

>MTRB_MYCTU (Q50496) Sensor histidine kinase mtrB (EC 2.7.13.3)|
          Length = 567

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  RIRKITSAQIQPDPIPTRIPRPVADPTVHPTAP 116
           R  K+T++ +   PIP  + +PVA P   P  P
Sbjct: 519 RGHKVTTSPLPMKPIPQPVLQPVAQPNPQPMPP 551

>MTRB_MYCBO (P59963) Sensor histidine kinase mtrB (EC 2.7.13.3)|
          Length = 567

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  RIRKITSAQIQPDPIPTRIPRPVADPTVHPTAP 116
           R  K+T++ +   PIP  + +PVA P   P  P
Sbjct: 519 RGHKVTTSPLPMKPIPQPVLQPVAQPNPQPMPP 551

>DFRA_GERHY (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 366

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 187 APLTICMIGAGGSIGSHLCEKLMAETQHVVLA 282
           +P T+C+ GA G IGS L  +L+ E  +VV A
Sbjct: 5   SPATVCVTGAAGFIGSWLVMRLL-ERGYVVHA 35

>XKR4_HUMAN (Q5GH76) XK-related protein 4|
          Length = 650

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 148 ASGGRVDLDGGAVAPLTICMIGAGGSIGS 234
           A+GG    DGG  +    C  G+GGS GS
Sbjct: 49  AAGGGCCPDGGGCSRCCCCCAGSGGSAGS 77

>MCPT6_MOUSE (P21845) Mast cell protease 6 precursor (EC 3.4.21.59) (MMCP-6)|
           (Tryptase)
          Length = 276

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 275 TTCWVSAMSFSQRWEPMEPPAPIMQM 198
           T+CWV+        EP+ PP P+ Q+
Sbjct: 154 TSCWVTGWGDIDNDEPLPPPYPLKQV 179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,841,742
Number of Sequences: 219361
Number of extensions: 409122
Number of successful extensions: 2673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2640
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)