ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189435.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1197 Score = 145 bits (73), Expect = 9e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 164 tggatctggacggcggcgccgtggcgccgctcaccatctgcatgatcggcgccggcggct 223 |||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||| Sbjct: 47 tggatctggacggcaaccccatcgcgcccctcaccatctgcatgatcggcgccggcggct 106 Query: 224 ccatcggctcccacctctgcgagaagctcatggccgagacc 264 |||||||||||||||||||||||||||||||||||||||| Sbjct: 107 tcatcggctcccacctctgcgagaagctcatggccgagacc 147
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 9e-32 Identities = 94/101 (93%) Strand = Plus / Minus Query: 164 tggatctggacggcggcgccgtggcgccgctcaccatctgcatgatcggcgccggcggct 223 |||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||| Sbjct: 42734319 tggatctggacggcaaccccatcgcgcccctcaccatctgcatgatcggcgccggcggct 42734260 Query: 224 ccatcggctcccacctctgcgagaagctcatggccgagacc 264 |||||||||||||||||||||||||||||||||||||||| Sbjct: 42734259 tcatcggctcccacctctgcgagaagctcatggccgagacc 42734219
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1656_A11 Length = 148887 Score = 145 bits (73), Expect = 9e-32 Identities = 94/101 (93%) Strand = Plus / Minus Query: 164 tggatctggacggcggcgccgtggcgccgctcaccatctgcatgatcggcgccggcggct 223 |||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||| Sbjct: 67084 tggatctggacggcaaccccatcgcgcccctcaccatctgcatgatcggcgccggcggct 67025 Query: 224 ccatcggctcccacctctgcgagaagctcatggccgagacc 264 |||||||||||||||||||||||||||||||||||||||| Sbjct: 67024 tcatcggctcccacctctgcgagaagctcatggccgagacc 66984
>dbj|AK070623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063F13, full insert sequence Length = 1823 Score = 145 bits (73), Expect = 9e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 164 tggatctggacggcggcgccgtggcgccgctcaccatctgcatgatcggcgccggcggct 223 |||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||| Sbjct: 215 tggatctggacggcaaccccatcgcgcccctcaccatctgcatgatcggcgccggcggct 274 Query: 224 ccatcggctcccacctctgcgagaagctcatggccgagacc 264 |||||||||||||||||||||||||||||||||||||||| Sbjct: 275 tcatcggctcccacctctgcgagaagctcatggccgagacc 315
>gb|BT016798.1| Zea mays clone Contig631 mRNA sequence Length = 1534 Score = 129 bits (65), Expect = 5e-27 Identities = 83/89 (93%) Strand = Plus / Plus Query: 193 ctcaccatctgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctc 252 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 76 ctcaccatctgcatgatcggcgccggcggcttcatcggctcccacctctgcgagaagcta 135 Query: 253 atggccgagacccagcacgtcgtcctcgc 281 ||||||||||| || ||| ||||||||| Sbjct: 136 atggccgagacgcaccacaccgtcctcgc 164
>gb|AY530961.1| Zea mays dTDP-glucose 4,6-dehydratase mRNA, complete cds Length = 1505 Score = 129 bits (65), Expect = 5e-27 Identities = 83/89 (93%) Strand = Plus / Plus Query: 193 ctcaccatctgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctc 252 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 192 ctcaccatctgcatgatcggcgccggcggcttcatcggctcccacctctgcgagaagcta 251 Query: 253 atggccgagacccagcacgtcgtcctcgc 281 ||||||||||| || ||| ||||||||| Sbjct: 252 atggccgagacgcaccacaccgtcctcgc 280
>gb|DQ345778.1| Solanum tuberosum UDP-apiose/xylose synthase (UAXs) mRNA, complete cds Length = 1375 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatg 255 ||||||||||||||||| |||| ||| ||||||||| | ||||||||||||||| Sbjct: 93 tgcatgatcggcgccggtggcttcattggctcccacttatgcgagaagctcatg 146
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144, complete sequence Length = 135217 Score = 65.9 bits (33), Expect = 6e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 208 atcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccga 260 ||||||| ||| |||| |||||| || |||||||||||||||||||||||||| Sbjct: 42424 atcggcggcggaggcttcatcggatctcacctctgcgagaagctcatggccga 42476
>gb|DQ339463.1| Vitis pseudoreticulata UDP-D-apiose/UDP-D-xylose synthase mRNA, complete cds Length = 882 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 205 atgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgagac 263 |||||||||||||| || | ||| || || ||||||||||||||||| ||||||||||| Sbjct: 61 atgatcggcgccggaggattcataggatcgcacctctgcgagaagcttatggccgagac 119
>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence Length = 115175 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 199 atctgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatg 255 |||||||| |||||||| || || | |||||| || |||||||| |||||||||||| Sbjct: 12397 atctgcattatcggcgctggaggtttcatcggttctcacctctgtgagaagctcatg 12453
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 46.1 bits (23), Expect = 0.060 Identities = 44/51 (86%) Strand = Plus / Plus Query: 210 cggcgccggcggctccatcggctcccacctctgcgagaagctcatggccga 260 ||||| || ||||| ||||||||| ||||||||||| ||||| ||||||| Sbjct: 192633 cggcggcgccggcttcatcggctcgcacctctgcgacaagctgttggccga 192683
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 46.1 bits (23), Expect = 0.060 Identities = 26/27 (96%) Strand = Plus / Plus Query: 214 gccggcggctccatcggctcccacctc 240 |||||||||| |||||||||||||||| Sbjct: 53451 gccggcggcttcatcggctcccacctc 53477
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Minus Query: 161 gggtggatctggacggcggcgcc 183 ||||||||||||||||||||||| Sbjct: 1480236 gggtggatctggacggcggcgcc 1480214
>ref|NM_128345.2| Arabidopsis thaliana AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) AT2G27860 (AXS1) mRNA, complete cds Length = 1516 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 116 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 175 Query: 262 ac 263 || Sbjct: 176 ac 177
>gb|AY735589.1| Arabidopsis thaliana hypothetical protein AT2G27860 mRNA, complete cds Length = 1514 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 125 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 184 Query: 262 ac 263 || Sbjct: 185 ac 186
>gb|AY448013.1|AY448010S4 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig SR4 Length = 87724 Score = 44.1 bits (22), Expect = 0.24 Identities = 55/66 (83%) Strand = Plus / Plus Query: 205 atgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgagacc 264 ||||| |||||||| || | ||| || || ||||| ||||||||||||||| | ||||| Sbjct: 11622 atgattggcgccggaggtttcatagggtcgcacctgtgcgagaagctcatgtcggagacg 11681 Query: 265 cagcac 270 |||||| Sbjct: 11682 cagcac 11687
>gb|BT013113.1| Lycopersicon esculentum clone 114400R, mRNA sequence Length = 1541 Score = 44.1 bits (22), Expect = 0.24 Identities = 46/54 (85%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatg 255 ||||||||||||||||| || | ||| ||||| ||| | || |||||||||||| Sbjct: 112 tgcatgatcggcgccggtggattcattggctcgcacttatgtgagaagctcatg 165
>gb|AY442191.1| Arabidopsis thaliana UDP-D-apiose/UDP-D-xylose synthase (AXS1) mRNA, complete cds Length = 1170 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 61 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 120 Query: 262 ac 263 || Sbjct: 121 ac 122
>gb|BT001016.1| Arabidopsis thaliana At2g27860/F15K20.4 mRNA, complete cds Length = 1170 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 61 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 120 Query: 262 ac 263 || Sbjct: 121 ac 122
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete sequence Length = 94884 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 94237 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 94296 Query: 262 ac 263 || Sbjct: 94297 ac 94298
>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete sequence Length = 118196 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 12894 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 12953 Query: 262 ac 263 || Sbjct: 12954 ac 12955
>gb|AF361574.1| Arabidopsis thaliana At2g27860/F15K20.4 mRNA, complete cds Length = 1386 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 113 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 172 Query: 262 ac 263 || Sbjct: 173 ac 174
>gb|AY042880.1| Arabidopsis thaliana similar to dihydroflavonol reductase (T23G18.6) mRNA, complete cds Length = 1561 Score = 44.1 bits (22), Expect = 0.24 Identities = 43/50 (86%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagct 251 ||||||||||| ||||| || | ||| ||||| || |||||||||||||| Sbjct: 145 tgcatgatcggtgccggaggtttcattggctctcatctctgcgagaagct 194
>gb|AY086830.1| Arabidopsis thaliana clone 28205 mRNA, complete sequence Length = 1496 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 119 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 178 Query: 262 ac 263 || Sbjct: 179 ac 180
>gb|AY924751.1| Arabidopsis thaliana hypothetical protein (At2g27860) mRNA, complete cds Length = 1170 Score = 44.1 bits (22), Expect = 0.24 Identities = 52/62 (83%) Strand = Plus / Plus Query: 202 tgcatgatcggcgccggcggctccatcggctcccacctctgcgagaagctcatggccgag 261 ||||||||||||||||| || | |||||| || || ||||| || |||||| || ||||| Sbjct: 61 tgcatgatcggcgccggaggtttcatcggttcacatctctgtgaaaagctcttgaccgag 120 Query: 262 ac 263 || Sbjct: 121 ac 122
>ref|XM_368934.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00310.4) partial mRNA Length = 1629 Score = 42.1 bits (21), Expect = 0.94 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 gcgccggcggctccatcggctccca 236 |||||||||||||||||||| |||| Sbjct: 989 gcgccggcggctccatcggcaccca 1013
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 cgccgctcaccatctgcatga 208 ||||||||||||||||||||| Sbjct: 84767 cgccgctcaccatctgcatga 84747
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 acggcggcgccgtggcgccgc 193 ||||||||||||||||||||| Sbjct: 400391 acggcggcgccgtggcgccgc 400411
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7 Length = 349652 Score = 42.1 bits (21), Expect = 0.94 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 cggcgccggcggctccatcggctcc 234 ||||||||||||||| ||||||||| Sbjct: 118062 cggcgccggcggctcgatcggctcc 118086
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cggcgccggcggctccatcgg 230 ||||||||||||||||||||| Sbjct: 2632843 cggcgccggcggctccatcgg 2632823
>ref|XM_314643.2| Anopheles gambiae str. PEST ENSANGP00000020142 (ENSANGG00000017653), partial mRNA Length = 1353 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cccgtcgcggatccgaccgtc 101 ||||||||||||||||||||| Sbjct: 748 cccgtcgcggatccgaccgtc 768
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 ggcgccggcggctccatcggc 231 ||||||||||||||||||||| Sbjct: 1266777 ggcgccggcggctccatcggc 1266797
>dbj|AB044709.1| Gryllus bimaculatus mRNA for hedgehog protein, partial cds Length = 2963 Score = 42.1 bits (21), Expect = 0.94 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 cggcggcgccgtggcgccgctcacc 198 |||||||| |||||||||||||||| Sbjct: 988 cggcggcgtcgtggcgccgctcacc 1012
>ref|XM_481269.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1374 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tggacggcggcgccgtggcg 189 |||||||||||||||||||| Sbjct: 539 tggacggcggcgccgtggcg 558
>ref|XM_482584.1| Oryza sativa (japonica cultivar-group), mRNA Length = 933 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gacggcggcgccgtggcgcc 191 |||||||||||||||||||| Sbjct: 566 gacggcggcgccgtggcgcc 547
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggtggatctggacggcggcg 181 |||||||||||||||||||| Sbjct: 27544 ggtggatctggacggcggcg 27525
>ref|XM_368949.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00295.4) partial mRNA Length = 2451 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 gagggagagcatggcgagcg 154 |||||||||||||||||||| Sbjct: 507 gagggagagcatggcgagcg 526
>emb|Z49938.1|CEF38A3 Caenorhabditis elegans Cosmid F38A3, complete sequence Length = 20555 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ccggcggctccatcggctcc 234 |||||||||||||||||||| Sbjct: 15214 ccggcggctccatcggctcc 15233
>emb|AL353583.15| Human DNA sequence from clone RP11-144I2 on chromosome 10 Contains part of a novel gene (DKFZp761L0424) (KIAA1217), complete sequence Length = 118906 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 ataacctcagcccaaatccaacca 53 |||||||||||||| ||||||||| Sbjct: 40615 ataacctcagcccacatccaacca 40592
>emb|AL161936.15| Human DNA sequence from clone RP11-48B24 on chromosome 10 Contains the 3' end of the WAC gene for WW domain-containing adapter with a coiled-coil region (PRO1741, FLJ31290, KIAA1844, MGC10753), a CGI-121 protein (CGI-121) pseudogene, the NMA gene for novel protein and two CpG islands, complete sequence Length = 155584 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 agataacctcagcccaaatc 47 |||||||||||||||||||| Sbjct: 14924 agataacctcagcccaaatc 14905
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cggcgccggcggctccatcggctc 233 ||||||||||||| |||||||||| Sbjct: 912162 cggcgccggcggcgccatcggctc 912139
>emb|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to 3213379 Length = 199922 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 atcggctcccacctctgcga 245 |||||||||||||||||||| Sbjct: 142631 atcggctcccacctctgcga 142650
>emb|X90711.1|BPLPSBLOC Bordetella pertussis lipopolysaccharide biosynthesis locus baf gene, waaA, waaB & wlbA,B,C,D,E,F,G,H,I,J & L genes Length = 15389 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ggcgccggcggctccatcgg 230 |||||||||||||||||||| Sbjct: 13957 ggcgccggcggctccatcgg 13976
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ggcgccggcggctccatcgg 230 |||||||||||||||||||| Sbjct: 80602 ggcgccggcggctccatcgg 80583
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcgccgtggcgccgctcacc 198 |||||||||||||||||||| Sbjct: 4887602 gcgccgtggcgccgctcacc 4887583
>gb|AC110611.3| Homo sapiens BAC clone RP11-345F18 from 4, complete sequence Length = 195155 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gggggcagggtggatctgga 173 |||||||||||||||||||| Sbjct: 93716 gggggcagggtggatctgga 93735
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tcggctcccacctctgcgag 246 |||||||||||||||||||| Sbjct: 171945 tcggctcccacctctgcgag 171926
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cggcgccggcggctccatcggctc 233 ||||||||||||||| |||||||| Sbjct: 4197119 cggcgccggcggctcgatcggctc 4197096
>ref|NM_063961.2| Caenorhabditis elegans F38A3.2 (collagen) mRNA, complete cds Length = 1043 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccggcggctccatcggctcc 234 |||||||||||||||||||| Sbjct: 767 ccggcggctccatcggctcc 748
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gacggcggcgccgtggcgcc 191 |||||||||||||||||||| Sbjct: 21234399 gacggcggcgccgtggcgcc 21234380 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tggacggcggcgccgtggcg 189 |||||||||||||||||||| Sbjct: 11123659 tggacggcggcgccgtggcg 11123640
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggtggatctggacggcggcg 181 |||||||||||||||||||| Sbjct: 7749958 ggtggatctggacggcggcg 7749939
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 cggcggcgccgtggcgccgc 193 |||||||||||||||||||| Sbjct: 1445460 cggcggcgccgtggcgccgc 1445479
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 ctgcatgatcggcgccggcg 220 |||||||||||||||||||| Sbjct: 2963771 ctgcatgatcggcgccggcg 2963752
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gcgagcgggggcagggtgga 167 |||||||||||||||||||| Sbjct: 1298657 gcgagcgggggcagggtgga 1298676
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gacggcggcgccgtggcgcc 191 |||||||||||||||||||| Sbjct: 60676 gacggcggcgccgtggcgcc 60657
>dbj|AK112074.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A10, full insert sequence Length = 1701 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tggacggcggcgccgtggcg 189 |||||||||||||||||||| Sbjct: 611 tggacggcggcgccgtggcg 630
>dbj|AK111905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D01, full insert sequence Length = 1705 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tggacggcggcgccgtggcg 189 |||||||||||||||||||| Sbjct: 615 tggacggcggcgccgtggcg 634
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1446H11 Length = 135488 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tggacggcggcgccgtggcg 189 |||||||||||||||||||| Sbjct: 94265 tggacggcggcgccgtggcg 94246
>gb|AC005876.3|AC005876 citb_188_i_5, complete sequence Length = 89817 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 agataacctcagcccaaatc 47 |||||||||||||||||||| Sbjct: 9434 agataacctcagcccaaatc 9415
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0560B10, complete sequence Length = 108295 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tggacggcggcgccgtggcg 189 |||||||||||||||||||| Sbjct: 82175 tggacggcggcgccgtggcg 82156
>dbj|AB070585.1| Bradyrhizobium elkanii gyrB gene for DNA gyrase subunit B, partial cds, strain:USDA94 Length = 909 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 acggcggcgccgtggcgccgctca 196 |||||| ||||||||||||||||| Sbjct: 356 acggcgacgccgtggcgccgctca 379
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcgccgtggcgccgctcacc 198 |||||||||||||||||||| Sbjct: 4890620 gcgccgtggcgccgctcacc 4890601
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gcgcgaccgccgggggagcg 135 |||||||||||||||||||| Sbjct: 916278 gcgcgaccgccgggggagcg 916297
>gb|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region Length = 220060 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 atcggctcccacctctgcga 245 |||||||||||||||||||| Sbjct: 22078 atcggctcccacctctgcga 22059
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 cgcgccgcgcgaccgccgggggagcgag 137 |||||||||||||||||| ||| ||||| Sbjct: 76425 cgcgccgcgcgaccgccgcgggcgcgag 76452
>gb|AC132487.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0499F10, complete sequence Length = 75032 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggtggatctggacggcggcg 181 |||||||||||||||||||| Sbjct: 60466 ggtggatctggacggcggcg 60447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,826,755 Number of Sequences: 3902068 Number of extensions: 1826755 Number of successful extensions: 44631 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43047 Number of HSP's gapped (non-prelim): 1584 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
