ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28e02 |
|---|---|
| Clone Library Name | barley_pub |
>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC| 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) Length = 762 Score = 244 bits (623), Expect = 8e-65 Identities = 122/125 (97%), Positives = 123/125 (98%) Frame = +2 Query: 101 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEE 280 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAA GAKNGYGDYLIEEEE Sbjct: 1 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAAAGAKNGYGDYLIEEEE 60 Query: 281 GLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTXGQP 460 GLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFST GQP Sbjct: 61 GLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTKGQP 120 Query: 461 CTYSR 475 CTYS+ Sbjct: 121 CTYSK 125
>AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC| 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) Length = 764 Score = 181 bits (459), Expect = 9e-46 Identities = 91/125 (72%), Positives = 103/125 (82%), Gaps = 1/125 (0%) Frame = +2 Query: 104 AILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGA-ASAATGAKNGYGDYLIEEEE 280 AIL +LGTEILIPVC VIGI FA+ QW +VSKVK++ AS AKNGY DYLIEEEE Sbjct: 3 AILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEE 62 Query: 281 GLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTXGQP 460 G+NDHNVVVKCAEIQ AISEGATSFLFT Y+YVG+FMV FA +IFLFLGS+EGFST Q Sbjct: 63 GINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQA 122 Query: 461 CTYSR 475 C+Y + Sbjct: 123 CSYDK 127
>AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane proton pump 1| (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3) Length = 770 Score = 181 bits (458), Expect = 1e-45 Identities = 88/130 (67%), Positives = 109/130 (83%), Gaps = 4/130 (3%) Frame = +2 Query: 92 LTAMAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTP--GAASA--ATGAKNGYGD 259 + A A+L EL TEIL+P+C VIGI F++ QW++VS+VK+T GA+S+ A KNGYGD Sbjct: 1 MVAPALLPELWTEILVPICAVIGIAFSLFQWYVVSRVKLTSDLGASSSGGANNGKNGYGD 60 Query: 260 YLIEEEEGLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEG 439 YLIEEEEG+ND +VV KCAEIQTAISEGATSFLFT Y+YVG+FM+ FAA+IF+FLGS+EG Sbjct: 61 YLIEEEEGVNDQSVVAKCAEIQTAISEGATSFLFTEYKYVGVFMIFFAAVIFVFLGSVEG 120 Query: 440 FSTXGQPCTY 469 FST +PCTY Sbjct: 121 FSTDNKPCTY 130
>HPPA_LEPIN (Q8F641) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 704 Score = 37.7 bits (86), Expect = 0.015 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Frame = +2 Query: 155 IGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEEGLNDHNVVVKCAEIQTAI 334 + I+ A++ IV+ V T S G G E+E K EI +AI Sbjct: 4 VTIIIAMSILAIVTAVVYTLKVTSIKVGTLGG------NEKE-------TKKLLEISSAI 50 Query: 335 SEGATSFLFTMYQYVGMFMVVFAAIIFLFLGS--IEGFS 445 SEGA +FL Y+ + +F+ A +I L L + EGF+ Sbjct: 51 SEGAMAFLVREYKVISLFIAFMAVLIVLLLDNPGSEGFN 89
>HPPA_LEPIC (Q72Q29) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 704 Score = 37.7 bits (86), Expect = 0.015 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Frame = +2 Query: 155 IGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEEGLNDHNVVVKCAEIQTAI 334 + I+ A++ IV+ V T S G G E+E K EI +AI Sbjct: 4 VTIIIAMSILAIVTAVVYTLKVTSIKVGTLGG------NEKE-------TKKLLEISSAI 50 Query: 335 SEGATSFLFTMYQYVGMFMVVFAAIIFLFLGS--IEGFS 445 SEGA +FL Y+ + +F+ A +I L L + EGF+ Sbjct: 51 SEGAMAFLVREYKVISLFIAFMAVLIVLLLDNPGSEGFN 89
>HPPA2_RHOPA (Q8KY01) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 725 Score = 33.1 bits (74), Expect = 0.37 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +2 Query: 317 EIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSI 433 EI AI +GA ++L Y+ + + V A +IF FLG + Sbjct: 40 EIAGAIQQGAAAYLARQYKTIAIVGAVLAILIFFFLGGL 78
>HPPA_BRAJA (Q89K83) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 706 Score = 32.7 bits (73), Expect = 0.49 Identities = 25/98 (25%), Positives = 40/98 (40%) Frame = +2 Query: 134 LIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEEGLNDHNVVVKC 313 LI +CGV+ +V+A+ W T SA G+ + Sbjct: 6 LIVLCGVLSVVYAI--W-------ATSSVLSADAGSP---------------------RM 35 Query: 314 AEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLG 427 EI A+ EGA ++L Y +G+ +V ++ FLG Sbjct: 36 QEIAAAVREGAQAYLRRQYTTIGIVGIVIFVLLVYFLG 73
>HPPA_CLOTE (Q898Q9) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 673 Score = 32.3 bits (72), Expect = 0.64 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +2 Query: 317 EIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLG 427 EI I +GA +FL T Y+Y+ F+V+ I+ +F+G Sbjct: 38 EIAGHIHDGAMAFLKTEYKYLTGFIVIVTVILAIFVG 74
>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing| protein 1) (Beta-interferon gene positive-regulatory domain I-binding factor) (BLIMP-1) (Positive regulatory domain I-binding factor 1) (PRDI-binding factor 1) (PRDI-BF1) Length = 789 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 456 WPXVLNPSIDPRKRKIIAAKTTMNIPTYWYMVKRNDVAPSEMAVW 322 W +NP+ PR++ + A + MNI Y+Y +K A E+ VW Sbjct: 122 WMRYVNPAHSPREQNLAACQNGMNI--YFYTIKPIP-ANQELLVW 163
>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5037 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = +2 Query: 221 ASAATGAKNGYGDYLIEEEEGLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVV 397 A A +G +G+G EE EG D N+V E T E A L ++ V ++ Sbjct: 4601 AGAGSGGGSGWGSGAGEEAEGDEDENMVYYFLEESTGYMEPALWCLSLLHTLVAFLCII 4659
>HPPA_RHORT (O68460) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 702 Score = 29.3 bits (64), Expect = 5.4 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +2 Query: 227 AATGAKNGYGDYLIEEEEGLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAA 406 AA A GYG I+ + + EI A+ EGA++FL Y+ + + V Sbjct: 10 AAALAALGYGALTIKTIMAADAGTA--RMQEISGAVQEGASAFLNRQYKTIAVVGAVVFV 67 Query: 407 IIFLFLGSIEGF 442 I+ LG GF Sbjct: 68 ILTALLGISVGF 79
>TRUB_MYCLE (Q9Z5I4) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 320 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 221 ASAATGAKNGYGDYLIEEEEGLNDHNVVVKCAEI 322 + ++TGA G G +I++ G+ H+VV +C I Sbjct: 2 SESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRI 35
>HPPA1_RHOPA (P60363) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 706 Score = 29.3 bits (64), Expect = 5.4 Identities = 25/98 (25%), Positives = 39/98 (39%) Frame = +2 Query: 134 LIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEEGLNDHNVVVKC 313 +I +CG + IV+A+ W A S+ A G + Sbjct: 6 VIVLCGALSIVYAI--W-----------ATSSVLAADQGNA-----------------RM 35 Query: 314 AEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLG 427 EI A+ EGA ++L Y + + VV A++ FLG Sbjct: 36 QEIAGAVREGAQAYLKRQYMTIAIVGVVIFALLAYFLG 73
>ACOD_PIG (O02858) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA| desaturase) (Fatty acid desaturase) (Delta(9)-desaturase) (Fragment) Length = 334 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +2 Query: 92 LTAMAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGA 220 L ++ LG L ILIP C + +++A A ++++S V VT GA Sbjct: 67 LMSLLHLGALYGIILIPTCKIYTLLWAFA-YYLLSAVGVTAGA 108
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +2 Query: 221 ASAATGAKNGYGDYLIEEEEGLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVV 397 + A +G +G+G EE EG D N+V E T E A L ++ V ++ Sbjct: 4599 SGAGSGGGSGWGSGAGEEVEGDEDENMVYYFLEESTGYMEPALRCLSLLHTLVAFLCII 4657
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +2 Query: 221 ASAATGAKNGYGDYLIEEEEGLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVV 397 + A +G +G+G EE EG D N+V E T E A L ++ V ++ Sbjct: 4602 SGAGSGGSSGWGLGAGEEAEGDEDENMVYYFLEESTGYMEPALRCLSLLHTLVAFLCII 4660
>HPPA1_METMA (Q8PYZ8) Pyrophosphate-energized proton pump 1 (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase 1) (H+-PPase 1) (Membrane-bound proton-translocating pyrophosphatase 1) Length = 676 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/97 (24%), Positives = 38/97 (39%) Frame = +2 Query: 134 LIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEEGLNDHNVVVKC 313 L P+C +IG++FA S G G+ LI+ Sbjct: 7 LTPICALIGLIFA---------------GISYKNVRNEGEGNELIK-------------- 37 Query: 314 AEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFL 424 +I AI GA +L Y+ + +F+V A ++ L L Sbjct: 38 -KITAAIHGGAMVYLNRQYRAIAVFVVFIAIVLALVL 73
>HPPA1_METAC (Q8TJA9) Pyrophosphate-energized proton pump 1 (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase 1) (H+-PPase 1) (Membrane-bound proton-translocating pyrophosphatase 1) Length = 676 Score = 28.5 bits (62), Expect = 9.2 Identities = 25/97 (25%), Positives = 38/97 (39%) Frame = +2 Query: 134 LIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAATGAKNGYGDYLIEEEEGLNDHNVVVKC 313 L P+C +IG++FA S G G+ LI+ Sbjct: 7 LAPICALIGLIFA---------------GISYKNVQNEGAGNDLIK-------------- 37 Query: 314 AEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFL 424 +I +I GA +L Y+ + +F+V A II L L Sbjct: 38 -KITASIHGGAMVYLNRQYRAIAVFVVFLAIIIALIL 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,723,456 Number of Sequences: 219361 Number of extensions: 585315 Number of successful extensions: 2443 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2437 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
