ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28d12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114H16, full insert sequence Length = 3013 Score = 285 bits (144), Expect = 4e-74 Identities = 195/212 (91%) Strand = Plus / Plus Query: 110 tggatccggagctcaccgtcgccaggatctacctcgggagaatcggtgctggtctgcaaa 169 ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 204 tggatccggagctcagcgtcgccaggatctacctcgggagaattggtgctggcctgcaaa 263 Query: 170 atcttgggaacacttgctacctcaactcggttctgcaatgcttgacgtacaccgagccgt 229 |||||||||||||||||||||| |||||||| |||||||||||||||||||| || || | Sbjct: 264 atcttgggaacacttgctacctgaactcggtgctgcaatgcttgacgtacacagaaccat 323 Query: 230 tcgcagcctacttgcagagtggaaggcacaagtcttcatgccgtactgctggattttgtg 289 | || ||||| |||||||| || | ||||||||||||||| ||||||||||||||||||| Sbjct: 324 ttgcggcctatttgcagagcgggaagcacaagtcttcatgtcgtactgctggattttgtg 383 Query: 290 cactgtgtgctcttcagaaccatgttaagact 321 |||| ||||||||||| ||||||||||||||| Sbjct: 384 cactatgtgctcttcaaaaccatgttaagact 415
>gb|AY224488.1| Oryza sativa (japonica cultivar-group) isolate 30843 putative ubiquitin-specific protease mRNA, partial cds Length = 2529 Score = 214 bits (108), Expect = 1e-52 Identities = 153/168 (91%) Strand = Plus / Plus Query: 154 ggtgctggtctgcaaaatcttgggaacacttgctacctcaactcggttctgcaatgcttg 213 |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1 ggtgctggcctgcaaaatcttgggaacacttgctacctgaactcggtgctgcaatgcttg 60 Query: 214 acgtacaccgagccgttcgcagcctacttgcagagtggaaggcacaagtcttcatgccgt 273 |||||||| || || || || ||||| |||||||| || | ||||||||||||||| ||| Sbjct: 61 acgtacacagaaccatttgcggcctatttgcagagcgggaagcacaagtcttcatgtcgt 120 Query: 274 actgctggattttgtgcactgtgtgctcttcagaaccatgttaagact 321 |||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 121 actgctggattttgtgcactatgtgctcttcaaaaccatgttaagact 168
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 154 ggtgctggtctgcaaaatcttgggaacacttgctacctcaactcggttctgcaatgcttg 213 |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 4228583 ggtgctggcctgcaaaatcttgggaacacttgctacctgaactcggtgctgcaatgcttg 4228524 Query: 214 acgtacaccgagccgttcgcagcctacttgcagagtggaaggcacaagtcttcatg 269 |||||||| || || || || ||||| |||||||| || | ||||||||||||||| Sbjct: 4228523 acgtacacagaaccatttgcggcctatttgcagagcgggaagcacaagtcttcatg 4228468 Score = 85.7 bits (43), Expect = 8e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 271 cgtactgctggattttgtgcactgtgtgctcttcagaaccatgttaagact 321 ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 4227754 cgtactgctggattttgtgcactatgtgctcttcaaaaccatgttaagact 4227704 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 110 tggatccggagctcaccgtcgccaggatctacctcgggagaat 152 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 4228914 tggatccggagctcagcgtcgccaggatctacctcgggagaat 4228872
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 154 ggtgctggtctgcaaaatcttgggaacacttgctacctcaactcggttctgcaatgcttg 213 |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 73804 ggtgctggcctgcaaaatcttgggaacacttgctacctgaactcggtgctgcaatgcttg 73745 Query: 214 acgtacaccgagccgttcgcagcctacttgcagagtggaaggcacaagtcttcatg 269 |||||||| || || || || ||||| |||||||| || | ||||||||||||||| Sbjct: 73744 acgtacacagaaccatttgcggcctatttgcagagcgggaagcacaagtcttcatg 73689 Score = 85.7 bits (43), Expect = 8e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 271 cgtactgctggattttgtgcactgtgtgctcttcagaaccatgttaagact 321 ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 72975 cgtactgctggattttgtgcactatgtgctcttcaaaaccatgttaagact 72925 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 110 tggatccggagctcaccgtcgccaggatctacctcgggagaat 152 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 74135 tggatccggagctcagcgtcgccaggatctacctcgggagaat 74093
>ref|XM_468249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3944 Score = 123 bits (62), Expect = 4e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 146 ggagaatcggtgctggtctgcaaaatcttgggaacacttgctacctcaactcggttctgc 205 ||||||| || ||||| |||||||| |||| || || |||||||||||||||||||||| Sbjct: 364 ggagaattggagctggcttgcaaaattttggcaatacctgctacctcaactcggttctgc 423 Query: 206 aatgcttgacgtacaccgagccgttcgcagcctacttgcagagtgg 251 ||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 424 aatgcttgacgtataccgagccgttcgtggcctacttgcagagtgg 469
>dbj|AK120097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022C03, full insert sequence Length = 3942 Score = 123 bits (62), Expect = 4e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 146 ggagaatcggtgctggtctgcaaaatcttgggaacacttgctacctcaactcggttctgc 205 ||||||| || ||||| |||||||| |||| || || |||||||||||||||||||||| Sbjct: 363 ggagaattggagctggcttgcaaaattttggcaatacctgctacctcaactcggttctgc 422 Query: 206 aatgcttgacgtacaccgagccgttcgcagcctacttgcagagtgg 251 ||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 423 aatgcttgacgtataccgagccgttcgtggcctacttgcagagtgg 468
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 119 bits (60), Expect = 6e-24 Identities = 81/88 (92%) Strand = Plus / Plus Query: 164 tgcaaaatcttgggaacacttgctacctcaactcggttctgcaatgcttgacgtacaccg 223 |||||||| |||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct: 33816628 tgcaaaattttggcaatacctgctacctcaactcggttctgcaatgcttgacgtataccg 33816687 Query: 224 agccgttcgcagcctacttgcagagtgg 251 ||||||||| ||||||||||||||||| Sbjct: 33816688 agccgttcgtggcctacttgcagagtgg 33816715
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 119 bits (60), Expect = 6e-24 Identities = 81/88 (92%) Strand = Plus / Plus Query: 164 tgcaaaatcttgggaacacttgctacctcaactcggttctgcaatgcttgacgtacaccg 223 |||||||| |||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct: 33206 tgcaaaattttggcaatacctgctacctcaactcggttctgcaatgcttgacgtataccg 33265 Query: 224 agccgttcgcagcctacttgcagagtgg 251 ||||||||| ||||||||||||||||| Sbjct: 33266 agccgttcgtggcctacttgcagagtgg 33293
>ref|XM_742746.1| Aspergillus fumigatus Af293 ubiquitin C-terminal hydrolase (Afu6g02380) partial mRNA Length = 1716 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 156 tgctggtctgcaaaatcttgggaacacttgctacctcaactc 197 ||||||||| || |||||||| || ||||||||||||||||| Sbjct: 324 tgctggtctacagaatcttggaaatacttgctacctcaactc 365
>dbj|AK073840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H15, full insert sequence Length = 2549 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 294 gtgtgctcttcagaaccatgttaagact 321 |||||||||||| ||||||||||||||| Sbjct: 1 gtgtgctcttcaaaaccatgttaagact 28
>gb|AF288062.1| Coccidioides posadasii ubiquitin carboxyl-terminal hydrolase mRNA, partial cds Length = 396 Score = 44.1 bits (22), Expect = 0.27 Identities = 37/42 (88%) Strand = Plus / Plus Query: 157 gctggtctgcaaaatcttgggaacacttgctacctcaactcg 198 ||||| || ||||| |||||||||||||||||| | |||||| Sbjct: 322 gctggcctccaaaaccttgggaacacttgctacttgaactcg 363
>gb|AF402311.1| Toxoplasma gondii DNA repair enzyme mRNA, complete cds Length = 1401 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 87 ggagaaggccgaggctctgggc 108 |||||||||||||||||||||| Sbjct: 432 ggagaaggccgaggctctgggc 453
>gb|AF402310.1| Toxoplasma gondii DNA repair enzyme gene, complete cds Length = 4248 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 87 ggagaaggccgaggctctgggc 108 |||||||||||||||||||||| Sbjct: 1165 ggagaaggccgaggctctgggc 1186
>ref|XM_483440.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2610 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 aatcttgggaacacttgctac 189 ||||||||||||||||||||| Sbjct: 919 aatcttgggaacacttgctac 939
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aatcttgggaacacttgctac 189 ||||||||||||||||||||| Sbjct: 26235818 aatcttgggaacacttgctac 26235798
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aatcttgggaacacttgctac 189 ||||||||||||||||||||| Sbjct: 68743 aatcttgggaacacttgctac 68723
>gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, complete sequence Length = 148738 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tgctggattttgtgcactgt 295 |||||||||||||||||||| Sbjct: 142216 tgctggattttgtgcactgt 142235
>gb|AC018371.10| Homo sapiens chromosome 18, clone RP11-552O4, complete sequence Length = 170123 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tgctggattttgtgcactgt 295 |||||||||||||||||||| Sbjct: 141686 tgctggattttgtgcactgt 141667
>gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, complete sequence Length = 196090 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gaggctctgggcttggatcc 116 |||||||||||||||||||| Sbjct: 134558 gaggctctgggcttggatcc 134577
>gb|AC105335.27| Mus musculus chromosome 5, clone RP23-377H14, complete sequence Length = 171789 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gaggctctgggcttggatcc 116 |||||||||||||||||||| Sbjct: 163654 gaggctctgggcttggatcc 163635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,638,379 Number of Sequences: 3902068 Number of extensions: 1638379 Number of successful extensions: 28687 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28640 Number of HSP's gapped (non-prelim): 47 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
