ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472552.1| Oryza sativa (japonica cultivar-group), predic... 367 2e-98
2emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 190 3e-45
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
4ref|XM_647191.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 48 0.026
5ref|XM_392900.2| PREDICTED: Apis mellifera similar to HECT, C2 a... 48 0.026
6dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 46 0.10
7gb|AC034231.6|AC034231 Homo sapiens chromosome 5 clone CTD-2203K... 44 0.41
8gb|AC104231.10| Homo sapiens chromosome 15, clone RP11-96H23, co... 42 1.6
9ref|XM_722206.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.6
10gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, com... 42 1.6
11emb|BX248985.6| Zebrafish DNA sequence from clone CH211-192N18 i... 42 1.6
12dbj|AP001023.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.6
13dbj|AP000673.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.6
14ref|NM_122778.1| Arabidopsis thaliana unknown protein AT5G28940 ... 40 6.3
15gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosom... 40 6.3
16gb|AC024778.1| Caenorhabditis elegans cosmid Y42H9B, complete se... 40 6.3
17gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, com... 40 6.3
18gb|AF399919.3| Escherichia coli 0113:H21 large virulence plasmid... 40 6.3
19gb|AC148008.2| Mus musculus BAC clone RP23-253C14 from chromosom... 40 6.3
20gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome... 40 6.3
21gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, compl... 40 6.3
22gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome... 40 6.3
23gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 genom... 40 6.3
24gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosom... 40 6.3
25emb|BX294437.2| Human DNA sequence from clone RP11-478I12 on chr... 40 6.3
26emb|AL049697.9|HSJ382I10 Human DNA sequence from clone RP3-382I1... 40 6.3
27gb|AC073856.17| Homo sapiens 3 BAC RP11-938G16 (Roswell Park Can... 40 6.3
28gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence 40 6.3
29gb|AC018632.1|AC018632 Genomic Sequence For Arabidopsis thaliana... 40 6.3
30gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complet... 40 6.3
31gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 6.3
32gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complet... 40 6.3
33gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complet... 40 6.3
34gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 40 6.3
35gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 40 6.3
36dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 6.3
37emb|AL845279.4| Mouse DNA sequence from clone RP23-2E13 on chrom... 40 6.3

>ref|XM_472552.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4320

 Score =  367 bits (185), Expect = 2e-98
 Identities = 349/403 (86%), Gaps = 3/403 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgccaaaagctattctacagaagttctgtcaaaaacttggttgggaagcaccgaagtata 60
            ||||||| ||| |||| || || |||||||| ||||||||||||||||| || || || |
Sbjct: 1136 tgccaaaggctgttctgcaaaaattctgtcagaaacttggttgggaagcgccaaaataca 1195

                                                                        
Query: 61   gtaaaacatcagaaaaagctggtaaatttatatatgctgttaatgtattgcgtggttcta 120
            |||||| ||| ||||| | | ||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 1196 gtaaaatatctgaaaaggatcgtaaattcatatatgctgttaatgtactgcgtggctcta 1255

                                                                        
Query: 121  ctggccgtggtaaaagtcggaaggctggaggtttgacaaaaattgagttacctgaaaaag 180
            |||| |||||||||||||||||||||||||| ||||||||| | |||||| ||||| |||
Sbjct: 1256 ctggtcgtggtaaaagtcggaaggctggaggcttgacaaaagtcgagttaactgaacaag 1315

                                                                        
Query: 181  atgaagaatatgtatctgttcaggaagcacaaagtagagtggcgacatttgctctatatc 240
            || ||||||||| ||||||| ||||||||||||  ||||||||  | |||||||||||||
Sbjct: 1316 ataaagaatatgcatctgttgaggaagcacaaaacagagtggcagcttttgctctatatc 1375

                                                                        
Query: 241  aactgtttgctgatcttccactacgtcaattgcttattgaaccatatgcatcacttgttt 300
            || | || ||||||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct: 1376 aatttttcgctgatctttcattgcgccaattgcttattgaaccatatgcatcacttgttt 1435

                                                                        
Query: 301  taagatggcaagaaggtgaattagaagcttcatcaacatcaagggtgctggataccgagg 360
            |||||||||||||||| || ||   | | |||||| | ||||||||  ||||||| ||||
Sbjct: 1436 taagatggcaagaaggggagtt---atcatcatcatcttcaagggttatggatactgagg 1492

                                                       
Query: 361  atagtcgaagagctgggtttgtggatatgttattggatatgga 403
            |||||||||||||||| |||||||||| ||| |||||||||||
Sbjct: 1493 atagtcgaagagctggttttgtggataagttgttggatatgga 1535



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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
              complete sequence
          Length = 144811

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Minus

                                                                          
Query: 1      tgccaaaagctattctacagaagttctgtcaaaaacttggttgggaagcaccgaagtata 60
              ||||||| ||| |||| || || |||||||| ||||||||||||||||| || || || |
Sbjct: 100661 tgccaaaggctgttctgcaaaaattctgtcagaaacttggttgggaagcgccaaaataca 100602

                                                                          
Query: 61     gtaaaacatcagaaaaagctggtaaatttatatatgctgttaatgtattgcgtggttcta 120
              |||||| ||| ||||| | | ||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 100601 gtaaaatatctgaaaaggatcgtaaattcatatatgctgttaatgtactgcgtggctcta 100542

                                                                          
Query: 121    ctggccgtggtaaaagtcggaaggctggaggtttgacaaaaattgagttacctgaaaaag 180
              |||| |||||||||||||||||||||||||| ||||||||| | |||||| ||||| |||
Sbjct: 100541 ctggtcgtggtaaaagtcggaaggctggaggcttgacaaaagtcgagttaactgaacaag 100482

                                  
Query: 181    atgaagaatatgtatctgtt 200
              || ||||||||| |||||||
Sbjct: 100481 ataaagaatatgcatctgtt 100462



 Score =  137 bits (69), Expect = 4e-29
 Identities = 105/117 (89%)
 Strand = Plus / Minus

                                                                          
Query: 201    caggaagcacaaagtagagtggcgacatttgctctatatcaactgtttgctgatcttcca 260
              |||||||||||||  ||||||||  | ||||||||||||||| | || ||||||||| ||
Sbjct: 100023 caggaagcacaaaacagagtggcagcttttgctctatatcaatttttcgctgatctttca 99964

                                                                       
Query: 261    ctacgtcaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 317
               | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99963  ttgcgccaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 99907



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                         
Query: 330   tcatcaacatcaagggtgctggataccgaggatagtcgaagagctgggtttgtggatatg 389
             |||||| | ||||||||  ||||||| |||||||||||||||||||| |||||||||| |
Sbjct: 99805 tcatcatcttcaagggttatggatactgaggatagtcgaagagctggttttgtggataag 99746

                           
Query: 390   ttattggatatgga 403
             || |||||||||||
Sbjct: 99745 ttgttggatatgga 99732



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  190 bits (96), Expect = 3e-45
 Identities = 174/200 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgccaaaagctattctacagaagttctgtcaaaaacttggttgggaagcaccgaagtata 60
                ||||||| ||| |||| || || |||||||| ||||||||||||||||| || || || |
Sbjct: 21450911 tgccaaaggctgttctgcaaaaattctgtcagaaacttggttgggaagcgccaaaataca 21450852

                                                                            
Query: 61       gtaaaacatcagaaaaagctggtaaatttatatatgctgttaatgtattgcgtggttcta 120
                |||||| ||| ||||| | | ||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 21450851 gtaaaatatctgaaaaggatcgtaaattcatatatgctgttaatgtactgcgtggctcta 21450792

                                                                            
Query: 121      ctggccgtggtaaaagtcggaaggctggaggtttgacaaaaattgagttacctgaaaaag 180
                |||| |||||||||||||||||||||||||| ||||||||| | |||||| ||||| |||
Sbjct: 21450791 ctggtcgtggtaaaagtcggaaggctggaggcttgacaaaagtcgagttaactgaacaag 21450732

                                    
Query: 181      atgaagaatatgtatctgtt 200
                || ||||||||| |||||||
Sbjct: 21450731 ataaagaatatgcatctgtt 21450712



 Score =  137 bits (69), Expect = 4e-29
 Identities = 105/117 (89%)
 Strand = Plus / Minus

                                                                            
Query: 201      caggaagcacaaagtagagtggcgacatttgctctatatcaactgtttgctgatcttcca 260
                |||||||||||||  ||||||||  | ||||||||||||||| | || ||||||||| ||
Sbjct: 21450273 caggaagcacaaaacagagtggcagcttttgctctatatcaatttttcgctgatctttca 21450214

                                                                         
Query: 261      ctacgtcaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 317
                 | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21450213 ttgcgccaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 21450157



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                            
Query: 330      tcatcaacatcaagggtgctggataccgaggatagtcgaagagctgggtttgtggatatg 389
                |||||| | ||||||||  ||||||| |||||||||||||||||||| |||||||||| |
Sbjct: 21450055 tcatcatcttcaagggttatggatactgaggatagtcgaagagctggttttgtggataag 21449996

                              
Query: 390      ttattggatatgga 403
                || |||||||||||
Sbjct: 21449995 ttgttggatatgga 21449982



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>ref|XM_647191.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (124.t00009)
            partial mRNA
          Length = 1809

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 272  gcttattgaaccatatgcatcacttgttttaa 303
            ||||||||||||||||| ||||||||| ||||
Sbjct: 1770 gcttattgaaccatatgaatcacttgtattaa 1739



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>ref|XM_392900.2| PREDICTED: Apis mellifera similar to HECT, C2 and WW domain
            containing E3 ubiquitin protein ligase 2 (LOC409385),
            mRNA
          Length = 3697

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 317  tgaattagaagcttcatcaacatc 340
            ||||||||||||||||||||||||
Sbjct: 1266 tgaattagaagcttcatcaacatc 1243



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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 160   aaattgagttacctgaaaaagat 182
             |||||||||||||||||||||||
Sbjct: 42108 aaattgagttacctgaaaaagat 42130



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>gb|AC034231.6|AC034231 Homo sapiens chromosome 5 clone CTD-2203K17, complete sequence
          Length = 34136

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 54   aagtatagtaaaacatcagaaaaagc 79
            ||||||||| ||||||||||||||||
Sbjct: 6690 aagtatagtcaaacatcagaaaaagc 6715



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>gb|AC104231.10| Homo sapiens chromosome 15, clone RP11-96H23, complete sequence
          Length = 81256

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    ttctgtcaaaaacttggttgg 44
             |||||||||||||||||||||
Sbjct: 55053 ttctgtcaaaaacttggttgg 55073



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>ref|XM_722206.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06619)
           partial mRNA
          Length = 972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  tcagaaaaagctggtaaattt 89
           |||||||||||||||||||||
Sbjct: 565 tcagaaaaagctggtaaattt 585



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>gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, complete sequence
          Length = 163533

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    ttctgtcaaaaacttggttgg 44
             |||||||||||||||||||||
Sbjct: 16444 ttctgtcaaaaacttggttgg 16464



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>emb|BX248985.6| Zebrafish DNA sequence from clone CH211-192N18 in linkage group 12,
            complete sequence
          Length = 167140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 90   atatatgctgttaatgtattg 110
            |||||||||||||||||||||
Sbjct: 3116 atatatgctgttaatgtattg 3096



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>dbj|AP001023.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-817I5, complete
             sequence
          Length = 199197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    tcagaaaaagctggtaaattt 89
             |||||||||||||||||||||
Sbjct: 72644 tcagaaaaagctggtaaattt 72664



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>dbj|AP000673.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-88B16, complete
              sequence
          Length = 143353

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     tcagaaaaagctggtaaattt 89
              |||||||||||||||||||||
Sbjct: 105415 tcagaaaaagctggtaaattt 105435



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>ref|NM_122778.1| Arabidopsis thaliana unknown protein AT5G28940 mRNA, complete cds
          Length = 1458

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 24   ttctgtcaaaaacttggttgggaa 47
            |||| |||||||||||||||||||
Sbjct: 1065 ttctatcaaaaacttggttgggaa 1088



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>gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosome 14, complete sequence
          Length = 207430

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 319    aattagaagcttcatcaaca 338
              ||||||||||||||||||||
Sbjct: 102134 aattagaagcttcatcaaca 102115



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>gb|AC024778.1| Caenorhabditis elegans cosmid Y42H9B, complete sequence
          Length = 25297

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tatagtaaaacatcagaaaa 76
             ||||||||||||||||||||
Sbjct: 21789 tatagtaaaacatcagaaaa 21808



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>gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, complete sequence
          Length = 70656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 236  atatcaactgtttgctgatcttcc 259
            ||||| ||||||||||||||||||
Sbjct: 1140 atatccactgtttgctgatcttcc 1163



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>gb|AF399919.3| Escherichia coli 0113:H21 large virulence plasmid pO113 fimbrial
            biosynthesis operon, complete sequence
          Length = 36851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  aaagatgaagaatatgtatc 196
            ||||||||||||||||||||
Sbjct: 2364 aaagatgaagaatatgtatc 2383



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>gb|AC148008.2| Mus musculus BAC clone RP23-253C14 from chromosome 18, complete
             sequence
          Length = 161965

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aattgagttacctgaaaaag 180
             ||||||||||||||||||||
Sbjct: 48306 aattgagttacctgaaaaag 48287



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>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence
          Length = 152588

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    aattgagttacctgaaaaag 180
              ||||||||||||||||||||
Sbjct: 126043 aattgagttacctgaaaaag 126024



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>gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, complete sequence
          Length = 165548

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aaagatgaagaatatgtatc 196
              ||||||||||||||||||||
Sbjct: 139635 aaagatgaagaatatgtatc 139654



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>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete
            sequence
          Length = 149451

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   aaaacatcagaaaaagctgg 82
            ||||||||||||||||||||
Sbjct: 7611 aaaacatcagaaaaagctgg 7630



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>gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete
             sequence
          Length = 108767

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 174   gaaaaagatgaagaatatgtatct 197
             |||||||| |||||||||||||||
Sbjct: 11113 gaaaaagaagaagaatatgtatct 11136



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>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence
          Length = 162676

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 236    atatcaactgtttgctgatcttcc 259
              ||||| ||||||||||||||||||
Sbjct: 113966 atatccactgtttgctgatcttcc 113989



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>emb|BX294437.2| Human DNA sequence from clone RP11-478I12 on chromosome X Contains a
             MraW methylase family pseudogene and the 5' end of a novel
             gene, complete sequence
          Length = 41617

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     caaaagctattctacagaag 23
             ||||||||||||||||||||
Sbjct: 20441 caaaagctattctacagaag 20460



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>emb|AL049697.9|HSJ382I10 Human DNA sequence from clone RP3-382I10 on chromosome 6q14.3-15 Contains
              a novel gene, a TAF13 RNA polymerase II, TATA box binding
              protei (TBP)-associated factor (TAF13) (TAF2K) pseudogene,
              an S-adenosylmethionine decarboxylase 1 (AMD1) pseudogene,
              a suppression of tumorigenicity 13 (colon carcinoma)
              (Hsp70-interacting protein) (ST13) (HIP) pseudogene, the
              SLC35A1 gene for solute carrier family 35 (CMP-sialic acid
              transporter) member 1, the 3' end of the gene for a novel
              protein similar to arginyl-tRNA synthetase (arginine-tRNA
              ligase, EC 6.1.1.19) and two CpG islands, complete sequence
          Length = 141207

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 156    acaaaaattgagttacctgaaaaa 179
              |||||||||||||||||| |||||
Sbjct: 105789 acaaaaattgagttacctaaaaaa 105812



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>gb|AC073856.17| Homo sapiens 3 BAC RP11-938G16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177363

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 275    tattgaaccatatgcatcacttgt 298
              |||||||||| |||||||||||||
Sbjct: 107963 tattgaaccacatgcatcacttgt 107940



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>gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence
          Length = 219626

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   acctgaaaaagatgaagaat 189
             ||||||||||||||||||||
Sbjct: 97696 acctgaaaaagatgaagaat 97677



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>gb|AC018632.1|AC018632 Genomic Sequence For Arabidopsis thaliana Clone F3F24, Chromosome V,
             complete sequence
          Length = 151828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    ttctgtcaaaaacttggttgggaa 47
             |||| |||||||||||||||||||
Sbjct: 93742 ttctatcaaaaacttggttgggaa 93765



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>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence
          Length = 203896

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aaaacatcagaaaaagctgg 82
              ||||||||||||||||||||
Sbjct: 170382 aaaacatcagaaaaagctgg 170401



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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 175     aaaaagatgaagaatatgtatctgttcaggaa 206
               ||||||||||||  |||||| |||||||||||
Sbjct: 4709429 aaaaagatgaagggtatgtacctgttcaggaa 4709398



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>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence
          Length = 218532

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   aaattgagttacctgaaaaa 179
             ||||||||||||||||||||
Sbjct: 98491 aaattgagttacctgaaaaa 98472



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>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence
          Length = 229988

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    aaattgagttacctgaaaaa 179
              ||||||||||||||||||||
Sbjct: 153491 aaattgagttacctgaaaaa 153510



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>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   aaattgagttacctgaaaaa 179
             ||||||||||||||||||||
Sbjct: 32724 aaattgagttacctgaaaaa 32705



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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     cagaaaaagctggtaaattt 89
              ||||||||||||||||||||
Sbjct: 955346 cagaaaaagctggtaaattt 955365



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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 175     aaaaagatgaagaatatgtatctgttcaggaa 206
               ||||||||||||  |||||| |||||||||||
Sbjct: 4640446 aaaaagatgaagggtatgtacctgttcaggaa 4640415



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>emb|AL845279.4| Mouse DNA sequence from clone RP23-2E13 on chromosome X, complete
             sequence
          Length = 29952

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   atatgtatctgttcaggaag 207
             ||||||||||||||||||||
Sbjct: 10903 atatgtatctgttcaggaag 10922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,507,124
Number of Sequences: 3902068
Number of extensions: 4507124
Number of successful extensions: 91096
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90934
Number of HSP's gapped (non-prelim): 162
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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