Clone Name | bastl28d11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4320 Score = 367 bits (185), Expect = 2e-98 Identities = 349/403 (86%), Gaps = 3/403 (0%) Strand = Plus / Plus Query: 1 tgccaaaagctattctacagaagttctgtcaaaaacttggttgggaagcaccgaagtata 60 ||||||| ||| |||| || || |||||||| ||||||||||||||||| || || || | Sbjct: 1136 tgccaaaggctgttctgcaaaaattctgtcagaaacttggttgggaagcgccaaaataca 1195 Query: 61 gtaaaacatcagaaaaagctggtaaatttatatatgctgttaatgtattgcgtggttcta 120 |||||| ||| ||||| | | ||||||| |||||||||||||||||| ||||||| |||| Sbjct: 1196 gtaaaatatctgaaaaggatcgtaaattcatatatgctgttaatgtactgcgtggctcta 1255 Query: 121 ctggccgtggtaaaagtcggaaggctggaggtttgacaaaaattgagttacctgaaaaag 180 |||| |||||||||||||||||||||||||| ||||||||| | |||||| ||||| ||| Sbjct: 1256 ctggtcgtggtaaaagtcggaaggctggaggcttgacaaaagtcgagttaactgaacaag 1315 Query: 181 atgaagaatatgtatctgttcaggaagcacaaagtagagtggcgacatttgctctatatc 240 || ||||||||| ||||||| |||||||||||| |||||||| | ||||||||||||| Sbjct: 1316 ataaagaatatgcatctgttgaggaagcacaaaacagagtggcagcttttgctctatatc 1375 Query: 241 aactgtttgctgatcttccactacgtcaattgcttattgaaccatatgcatcacttgttt 300 || | || ||||||||| || | || |||||||||||||||||||||||||||||||||| Sbjct: 1376 aatttttcgctgatctttcattgcgccaattgcttattgaaccatatgcatcacttgttt 1435 Query: 301 taagatggcaagaaggtgaattagaagcttcatcaacatcaagggtgctggataccgagg 360 |||||||||||||||| || || | | |||||| | |||||||| ||||||| |||| Sbjct: 1436 taagatggcaagaaggggagtt---atcatcatcatcttcaagggttatggatactgagg 1492 Query: 361 atagtcgaagagctgggtttgtggatatgttattggatatgga 403 |||||||||||||||| |||||||||| ||| ||||||||||| Sbjct: 1493 atagtcgaagagctggttttgtggataagttgttggatatgga 1535
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 190 bits (96), Expect = 3e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 1 tgccaaaagctattctacagaagttctgtcaaaaacttggttgggaagcaccgaagtata 60 ||||||| ||| |||| || || |||||||| ||||||||||||||||| || || || | Sbjct: 100661 tgccaaaggctgttctgcaaaaattctgtcagaaacttggttgggaagcgccaaaataca 100602 Query: 61 gtaaaacatcagaaaaagctggtaaatttatatatgctgttaatgtattgcgtggttcta 120 |||||| ||| ||||| | | ||||||| |||||||||||||||||| ||||||| |||| Sbjct: 100601 gtaaaatatctgaaaaggatcgtaaattcatatatgctgttaatgtactgcgtggctcta 100542 Query: 121 ctggccgtggtaaaagtcggaaggctggaggtttgacaaaaattgagttacctgaaaaag 180 |||| |||||||||||||||||||||||||| ||||||||| | |||||| ||||| ||| Sbjct: 100541 ctggtcgtggtaaaagtcggaaggctggaggcttgacaaaagtcgagttaactgaacaag 100482 Query: 181 atgaagaatatgtatctgtt 200 || ||||||||| ||||||| Sbjct: 100481 ataaagaatatgcatctgtt 100462 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Minus Query: 201 caggaagcacaaagtagagtggcgacatttgctctatatcaactgtttgctgatcttcca 260 ||||||||||||| |||||||| | ||||||||||||||| | || ||||||||| || Sbjct: 100023 caggaagcacaaaacagagtggcagcttttgctctatatcaatttttcgctgatctttca 99964 Query: 261 ctacgtcaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 317 | || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99963 ttgcgccaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 99907 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 330 tcatcaacatcaagggtgctggataccgaggatagtcgaagagctgggtttgtggatatg 389 |||||| | |||||||| ||||||| |||||||||||||||||||| |||||||||| | Sbjct: 99805 tcatcatcttcaagggttatggatactgaggatagtcgaagagctggttttgtggataag 99746 Query: 390 ttattggatatgga 403 || ||||||||||| Sbjct: 99745 ttgttggatatgga 99732
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 190 bits (96), Expect = 3e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 1 tgccaaaagctattctacagaagttctgtcaaaaacttggttgggaagcaccgaagtata 60 ||||||| ||| |||| || || |||||||| ||||||||||||||||| || || || | Sbjct: 21450911 tgccaaaggctgttctgcaaaaattctgtcagaaacttggttgggaagcgccaaaataca 21450852 Query: 61 gtaaaacatcagaaaaagctggtaaatttatatatgctgttaatgtattgcgtggttcta 120 |||||| ||| ||||| | | ||||||| |||||||||||||||||| ||||||| |||| Sbjct: 21450851 gtaaaatatctgaaaaggatcgtaaattcatatatgctgttaatgtactgcgtggctcta 21450792 Query: 121 ctggccgtggtaaaagtcggaaggctggaggtttgacaaaaattgagttacctgaaaaag 180 |||| |||||||||||||||||||||||||| ||||||||| | |||||| ||||| ||| Sbjct: 21450791 ctggtcgtggtaaaagtcggaaggctggaggcttgacaaaagtcgagttaactgaacaag 21450732 Query: 181 atgaagaatatgtatctgtt 200 || ||||||||| ||||||| Sbjct: 21450731 ataaagaatatgcatctgtt 21450712 Score = 137 bits (69), Expect = 4e-29 Identities = 105/117 (89%) Strand = Plus / Minus Query: 201 caggaagcacaaagtagagtggcgacatttgctctatatcaactgtttgctgatcttcca 260 ||||||||||||| |||||||| | ||||||||||||||| | || ||||||||| || Sbjct: 21450273 caggaagcacaaaacagagtggcagcttttgctctatatcaatttttcgctgatctttca 21450214 Query: 261 ctacgtcaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 317 | || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21450213 ttgcgccaattgcttattgaaccatatgcatcacttgttttaagatggcaagaaggt 21450157 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 330 tcatcaacatcaagggtgctggataccgaggatagtcgaagagctgggtttgtggatatg 389 |||||| | |||||||| ||||||| |||||||||||||||||||| |||||||||| | Sbjct: 21450055 tcatcatcttcaagggttatggatactgaggatagtcgaagagctggttttgtggataag 21449996 Query: 390 ttattggatatgga 403 || ||||||||||| Sbjct: 21449995 ttgttggatatgga 21449982
>ref|XM_647191.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (124.t00009) partial mRNA Length = 1809 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 272 gcttattgaaccatatgcatcacttgttttaa 303 ||||||||||||||||| ||||||||| |||| Sbjct: 1770 gcttattgaaccatatgaatcacttgtattaa 1739
>ref|XM_392900.2| PREDICTED: Apis mellifera similar to HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 (LOC409385), mRNA Length = 3697 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 317 tgaattagaagcttcatcaacatc 340 |||||||||||||||||||||||| Sbjct: 1266 tgaattagaagcttcatcaacatc 1243
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 160 aaattgagttacctgaaaaagat 182 ||||||||||||||||||||||| Sbjct: 42108 aaattgagttacctgaaaaagat 42130
>gb|AC034231.6|AC034231 Homo sapiens chromosome 5 clone CTD-2203K17, complete sequence Length = 34136 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 54 aagtatagtaaaacatcagaaaaagc 79 ||||||||| |||||||||||||||| Sbjct: 6690 aagtatagtcaaacatcagaaaaagc 6715
>gb|AC104231.10| Homo sapiens chromosome 15, clone RP11-96H23, complete sequence Length = 81256 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 ttctgtcaaaaacttggttgg 44 ||||||||||||||||||||| Sbjct: 55053 ttctgtcaaaaacttggttgg 55073
>ref|XM_722206.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06619) partial mRNA Length = 972 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 tcagaaaaagctggtaaattt 89 ||||||||||||||||||||| Sbjct: 565 tcagaaaaagctggtaaattt 585
>gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, complete sequence Length = 163533 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 ttctgtcaaaaacttggttgg 44 ||||||||||||||||||||| Sbjct: 16444 ttctgtcaaaaacttggttgg 16464
>emb|BX248985.6| Zebrafish DNA sequence from clone CH211-192N18 in linkage group 12, complete sequence Length = 167140 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 atatatgctgttaatgtattg 110 ||||||||||||||||||||| Sbjct: 3116 atatatgctgttaatgtattg 3096
>dbj|AP001023.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-817I5, complete sequence Length = 199197 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 tcagaaaaagctggtaaattt 89 ||||||||||||||||||||| Sbjct: 72644 tcagaaaaagctggtaaattt 72664
>dbj|AP000673.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-88B16, complete sequence Length = 143353 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 tcagaaaaagctggtaaattt 89 ||||||||||||||||||||| Sbjct: 105415 tcagaaaaagctggtaaattt 105435
>ref|NM_122778.1| Arabidopsis thaliana unknown protein AT5G28940 mRNA, complete cds Length = 1458 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ttctgtcaaaaacttggttgggaa 47 |||| ||||||||||||||||||| Sbjct: 1065 ttctatcaaaaacttggttgggaa 1088
>gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosome 14, complete sequence Length = 207430 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aattagaagcttcatcaaca 338 |||||||||||||||||||| Sbjct: 102134 aattagaagcttcatcaaca 102115
>gb|AC024778.1| Caenorhabditis elegans cosmid Y42H9B, complete sequence Length = 25297 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tatagtaaaacatcagaaaa 76 |||||||||||||||||||| Sbjct: 21789 tatagtaaaacatcagaaaa 21808
>gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, complete sequence Length = 70656 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 atatcaactgtttgctgatcttcc 259 ||||| |||||||||||||||||| Sbjct: 1140 atatccactgtttgctgatcttcc 1163
>gb|AF399919.3| Escherichia coli 0113:H21 large virulence plasmid pO113 fimbrial biosynthesis operon, complete sequence Length = 36851 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aaagatgaagaatatgtatc 196 |||||||||||||||||||| Sbjct: 2364 aaagatgaagaatatgtatc 2383
>gb|AC148008.2| Mus musculus BAC clone RP23-253C14 from chromosome 18, complete sequence Length = 161965 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aattgagttacctgaaaaag 180 |||||||||||||||||||| Sbjct: 48306 aattgagttacctgaaaaag 48287
>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence Length = 152588 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aattgagttacctgaaaaag 180 |||||||||||||||||||| Sbjct: 126043 aattgagttacctgaaaaag 126024
>gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, complete sequence Length = 165548 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aaagatgaagaatatgtatc 196 |||||||||||||||||||| Sbjct: 139635 aaagatgaagaatatgtatc 139654
>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete sequence Length = 149451 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaaacatcagaaaaagctgg 82 |||||||||||||||||||| Sbjct: 7611 aaaacatcagaaaaagctgg 7630
>gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence Length = 108767 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 gaaaaagatgaagaatatgtatct 197 |||||||| ||||||||||||||| Sbjct: 11113 gaaaaagaagaagaatatgtatct 11136
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence Length = 162676 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 atatcaactgtttgctgatcttcc 259 ||||| |||||||||||||||||| Sbjct: 113966 atatccactgtttgctgatcttcc 113989
>emb|BX294437.2| Human DNA sequence from clone RP11-478I12 on chromosome X Contains a MraW methylase family pseudogene and the 5' end of a novel gene, complete sequence Length = 41617 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 caaaagctattctacagaag 23 |||||||||||||||||||| Sbjct: 20441 caaaagctattctacagaag 20460
>emb|AL049697.9|HSJ382I10 Human DNA sequence from clone RP3-382I10 on chromosome 6q14.3-15 Contains a novel gene, a TAF13 RNA polymerase II, TATA box binding protei (TBP)-associated factor (TAF13) (TAF2K) pseudogene, an S-adenosylmethionine decarboxylase 1 (AMD1) pseudogene, a suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) (ST13) (HIP) pseudogene, the SLC35A1 gene for solute carrier family 35 (CMP-sialic acid transporter) member 1, the 3' end of the gene for a novel protein similar to arginyl-tRNA synthetase (arginine-tRNA ligase, EC 6.1.1.19) and two CpG islands, complete sequence Length = 141207 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 acaaaaattgagttacctgaaaaa 179 |||||||||||||||||| ||||| Sbjct: 105789 acaaaaattgagttacctaaaaaa 105812
>gb|AC073856.17| Homo sapiens 3 BAC RP11-938G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177363 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 tattgaaccatatgcatcacttgt 298 |||||||||| ||||||||||||| Sbjct: 107963 tattgaaccacatgcatcacttgt 107940
>gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence Length = 219626 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 acctgaaaaagatgaagaat 189 |||||||||||||||||||| Sbjct: 97696 acctgaaaaagatgaagaat 97677
>gb|AC018632.1|AC018632 Genomic Sequence For Arabidopsis thaliana Clone F3F24, Chromosome V, complete sequence Length = 151828 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ttctgtcaaaaacttggttgggaa 47 |||| ||||||||||||||||||| Sbjct: 93742 ttctatcaaaaacttggttgggaa 93765
>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence Length = 203896 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaaacatcagaaaaagctgg 82 |||||||||||||||||||| Sbjct: 170382 aaaacatcagaaaaagctgg 170401
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 175 aaaaagatgaagaatatgtatctgttcaggaa 206 |||||||||||| |||||| ||||||||||| Sbjct: 4709429 aaaaagatgaagggtatgtacctgttcaggaa 4709398
>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence Length = 218532 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 aaattgagttacctgaaaaa 179 |||||||||||||||||||| Sbjct: 98491 aaattgagttacctgaaaaa 98472
>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence Length = 229988 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aaattgagttacctgaaaaa 179 |||||||||||||||||||| Sbjct: 153491 aaattgagttacctgaaaaa 153510
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence Length = 215490 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 aaattgagttacctgaaaaa 179 |||||||||||||||||||| Sbjct: 32724 aaattgagttacctgaaaaa 32705
>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome Length = 1181404 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cagaaaaagctggtaaattt 89 |||||||||||||||||||| Sbjct: 955346 cagaaaaagctggtaaattt 955365
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 175 aaaaagatgaagaatatgtatctgttcaggaa 206 |||||||||||| |||||| ||||||||||| Sbjct: 4640446 aaaaagatgaagggtatgtacctgttcaggaa 4640415
>emb|AL845279.4| Mouse DNA sequence from clone RP23-2E13 on chromosome X, complete sequence Length = 29952 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 atatgtatctgttcaggaag 207 |||||||||||||||||||| Sbjct: 10903 atatgtatctgttcaggaag 10922 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,507,124 Number of Sequences: 3902068 Number of extensions: 4507124 Number of successful extensions: 91096 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90934 Number of HSP's gapped (non-prelim): 162 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)