ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28d10 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.8 bits (229), Expect = 3e-19 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Frame = +2 Query: 116 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 292 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 293 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 424 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYR 106
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.8 bits (229), Expect = 3e-19 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Frame = +2 Query: 116 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 292 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 293 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 424 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYR 106
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.8 bits (229), Expect = 3e-19 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Frame = +2 Query: 116 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 292 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 293 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 424 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYR 106
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 92.8 bits (229), Expect = 3e-19 Identities = 43/99 (43%), Positives = 64/99 (64%) Frame = +2 Query: 128 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 307 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 308 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 424 P ++HTI+KLLL++ EI+ K A G++L EMIL+C R Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYR 104
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/99 (35%), Positives = 58/99 (58%) Frame = +2 Query: 131 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 310 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 311 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRN 427 S + ++KLL Y E+ K + G + EMIL C + RN Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRN 101
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 59.7 bits (143), Expect = 3e-09 Identities = 29/81 (35%), Positives = 52/81 (64%) Frame = +2 Query: 185 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 364 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 365 KRDAAGRVLPEMILICQNLRN 427 K G++ EMIL+C +++ Sbjct: 89 KLAEDGKLRHEMILVCNAIQH 109
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 89 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 268 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 269 LPTLFITVVRYVLPSED 319 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 184 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 11 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 3.2 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +2 Query: 152 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 322 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 323 TIQKLLL--LYLEIIDKRDAAGR 385 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +3 Query: 6 HSPPLPAPRSRSTS------AADPTTD 68 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +3 Query: 6 HSPPLPAPRSRSTS------AADPTTD 68 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 367 ARCRWPRPPGDDPHLPESPQH 429 AR P PPG DP LP+S Q+ Sbjct: 350 ARLGLPSPPGHDPRLPQSRQY 370
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 5.5 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +2 Query: 248 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 409 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 28.9 bits (63), Expect = 5.5 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +2 Query: 224 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 403 E++ + V LL N + LFI V + H + L+LE++ KRD G + +M+ Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332 Query: 404 LIC 412 IC Sbjct: 333 WIC 335
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 7.2 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +2 Query: 119 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 289 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 290 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 382 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 76 CGVSVVGSAAEVDRDLGAGRGGEWL 2 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 191 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 322 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 191 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 322 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -2 Query: 118 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 11 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 9.4 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 294 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 130 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 129 GLSMAPDLP 103 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 9.4 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 294 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 130 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 129 GLSMAPDLP 103 GL PD P Sbjct: 314 GLHSNPDSP 322
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 5 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 100 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) Length = 3169 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +2 Query: 248 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 409 L L+ T L + + Y PSED ++L L LE++D AA M+++ Sbjct: 378 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEVVDLEGAASDPFAFMVVV 431
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +3 Query: 6 HSPPLPAPRSRSTSAADPTTDTPHAVALR 92 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 219 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 82 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,746,054 Number of Sequences: 219361 Number of extensions: 821108 Number of successful extensions: 3486 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3483 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
