ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 31 1.7
2PATL2_ARATH (Q56ZI2) Patellin-2 30 2.9
3Y2912_DESPS (Q6AJ39) UPF0316 protein DP2912 30 4.9
4PSG1_HUMAN (P11464) Pregnancy-specific beta-1-glycoprotein 1 pre... 30 4.9
5NOS2_CHICK (Q90703) Nitric oxide synthase, inducible (EC 1.14.13... 29 6.4
6PLCB1_RAT (P10687) 1-phosphatidylinositol-4,5-bisphosphate phosp... 29 8.3

>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 602

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 222 GCAFMLSSIITIYSQVIKLRDLLDFTNFRALLDFTSI*KRIINLGAIRPMHLYLRATWP 46
           G AF L  I+T+ +    +RD++ F   +   D  +     ++   +R +H+ LRAT P
Sbjct: 540 GLAFGLDRIVTMMAGADSIRDVIAFPKTQRAQDLLTQAPSAVDEKQLRELHIRLRATEP 598



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>PATL2_ARATH (Q56ZI2) Patellin-2|
          Length = 683

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
 Frame = +1

Query: 238 PPPAKAPLSEEAKDARKALAT--------IYDKVLVVDTVESARSVVQLLTTKYKSFIHA 393
           PPP  AP+ EE  + +K   T          +K L  +T E  +S         K  I A
Sbjct: 117 PPPPPAPVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAPATVETKKEEILA 176

Query: 394 CDTEVSNIDVKQETPVGHGDV 456
               +     K+ETPV    V
Sbjct: 177 APAPIVAETKKEETPVAPAPV 197



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>Y2912_DESPS (Q6AJ39) UPF0316 protein DP2912|
          Length = 318

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 227 QRCSLLQLKPPCLRRLKMHGRLL 295
           QRC L +L PPC+ +  +HG  L
Sbjct: 288 QRCGLARLTPPCISQRALHGTSL 310



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>PSG1_HUMAN (P11464) Pregnancy-specific beta-1-glycoprotein 1 precursor|
           (PSBG-1) (Pregnancy-specific beta-1 glycoprotein C/D)
           (PS-beta-C/D) (Fetal liver non-specific cross-reactive
           antigen 1/2) (FL-NCA-1/2) (PSG95) (CD66f antigen)
          Length = 419

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 PPCLRRLKMHGRLLLPSTTKFWWLTRSNQL 343
           PPC +R+K  G LL  S   FW L  + Q+
Sbjct: 7   PPCTQRIKWKGLLLTASLLNFWNLPTTAQV 36



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>NOS2_CHICK (Q90703) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type|
           II) (Inducible NO synthase) (Inducible NOS) (iNOS)
           (Macrophage NOS)
          Length = 1136

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 370 KYKSFIHACDTEVSNIDVKQETPVGHGD 453
           ++ +F HA D ++S +   Q TPVG GD
Sbjct: 630 EFCAFAHAIDQKLSQLGALQLTPVGEGD 657



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>PLCB1_RAT (P10687) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154)
          Length = 1216

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +1

Query: 196  NGAEHECTAKTAVQPPPAKAPLSEEAKDARKALATIYDKVLVVDTVESARSVVQLLTTKY 375
            NG  H  T       PP++AP S+ A  + KA A   D +  V T   A+++ +L   + 
Sbjct: 862  NGVNHTATL---APKPPSQAPHSQPAPGSVKAPAKTEDLIQSVLTEVEAQTIEEL--KQQ 916

Query: 376  KSFI 387
            KSF+
Sbjct: 917  KSFV 920


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,397,208
Number of Sequences: 219361
Number of extensions: 1201343
Number of successful extensions: 2583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2579
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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