ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoa... 35 0.059
2AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoa... 35 0.059
3AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1) 29 3.2
4EURM1_EURMA (P25780) Mite group 1 allergen Eur m 1 precursor (EC... 29 3.2
5RL5_THEVO (Q97BW3) 50S ribosomal protein L5P 28 4.2
6RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-ass... 27 9.4

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
           hydrolase)
          Length = 869

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 233 LPKEIFLKDYKKPDYLFDTVDLEFQLGDEKTIVTS 337
           L K  + KDYK+PD+    + L+FQL  + T+VT+
Sbjct: 2   LAKAKYRKDYKQPDFTVTDIYLDFQLDPKHTVVTA 36



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>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
           hydrolase)
          Length = 869

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 236 PKEIFLKDYKKPDYLFDTVDLEFQLGDEKTIVTS 337
           P+  +  DY+ PDY    +DL F L  +KT+VT+
Sbjct: 4   PQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTA 37



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>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 236 PKEIFLKDYKKPDYLFDTVDLEFQLGDEKTIVTS 337
           PK  + KDYK   ++ + V L   + D +TIV S
Sbjct: 196 PKIHYRKDYKPSGFIINNVTLNINIHDNETIVRS 229



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>EURM1_EURMA (P25780) Mite group 1 allergen Eur m 1 precursor (EC 3.4.22.-) (Eur|
           m I)
          Length = 321

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 106 TLDRNKVQFLVVIT*FKVCQQEDSLFDCNRATYCCSRRTRDGPSEGDI 249
           +LD  K QFL+    F   +Q  + FD N  TY CS  +   PSE D+
Sbjct: 71  SLDEFKNQFLMNANAF---EQLKTQFDLNAETYACSINSVSLPSELDL 115



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>RL5_THEVO (Q97BW3) 50S ribosomal protein L5P|
          Length = 170

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 233 LPKEIFLKDYKKPDYLFD 286
           L K +++KDYK PDY FD
Sbjct: 75  LNKALYVKDYKIPDYSFD 92



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>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 12   PSIKDCLSPLQRGVPQGTRTLATALI*QRRVHTGQEQGPIPC 137
            P + D   PL+  VP GT+  + +L  +      QE+ P+PC
Sbjct: 1103 PGLGDTSFPLRHPVPHGTQDFSASLSIEMS-KGPQEEPPVPC 1143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,609,108
Number of Sequences: 219361
Number of extensions: 868834
Number of successful extensions: 1920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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