>ref|XM_483801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score =  113 bits (57), Expect = 4e-22
 Identities = 124/145 (85%), Gaps = 1/145 (0%)
 Strand = Plus / Plus

                                                                       
Query: 213 ccgaagaaccagagatggaccttccgaaggagatattcttgaaagactacaaaaaacccg 272
           ||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| || |
Sbjct: 268 ccgaagaaccagagatggatcttccaaaggagatattcctgaaagaatacaaaaagcctg 327

                                                                       
Query: 273 actacttgtttgacacggtggatttagaatttcaacttggtgatgaaaagaccatagtca 332
           | ||||| |||||| ||||  |||| |||||||||||||| || || || || ||||| |
Sbjct: 328 attacttatttgactcggtcaatttggaatttcaacttggcgaagacaaaacaatagtta 387

                                    
Query: 333 cttct-acatagctgtatctccagg 356
           | ||| | |||||||||||||||||
Sbjct: 388 catctaaaatagctgtatctccagg 412

>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full
           insert sequence
          Length = 3181

 Score =  113 bits (57), Expect = 4e-22
 Identities = 124/145 (85%), Gaps = 1/145 (0%)
 Strand = Plus / Plus

                                                                       
Query: 213 ccgaagaaccagagatggaccttccgaaggagatattcttgaaagactacaaaaaacccg 272
           ||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| || |
Sbjct: 268 ccgaagaaccagagatggatcttccaaaggagatattcctgaaagaatacaaaaagcctg 327

                                                                       
Query: 273 actacttgtttgacacggtggatttagaatttcaacttggtgatgaaaagaccatagtca 332
           | ||||| |||||| ||||  |||| |||||||||||||| || || || || ||||| |
Sbjct: 328 attacttatttgactcggtcaatttggaatttcaacttggcgaagacaaaacaatagtta 387

                                    
Query: 333 cttct-acatagctgtatctccagg 356
           | ||| | |||||||||||||||||
Sbjct: 388 catctaaaatagctgtatctccagg 412

>gb|AY105426.1| Zea mays PCO146438 mRNA sequence
          Length = 3165

 Score =  103 bits (52), Expect = 4e-19
 Identities = 121/144 (84%)
 Strand = Plus / Plus

                                                                       
Query: 187 tgcaacagagccacctactgctgcagccgaagaaccagagatggaccttccgaaggagat 246
           |||||||||||| ||  |||||||  | ||||||||||  |||||  | || ||||||||
Sbjct: 315 tgcaacagagccgccgcctgctgccactgaagaaccaggcatggatgtccccaaggagat 374

                                                                       
Query: 247 attcttgaaagactacaaaaaacccgactacttgtttgacacggtggatttagaatttca 306
           |||||||||||| |||||   ||| || || |  |||||||||||||||||| |||||||
Sbjct: 375 attcttgaaagattacaaggcacctgattattattttgacacggtggatttacaatttca 434

                                   
Query: 307 acttggtgatgaaaagaccatagt 330
           ||||||||| ||||||||||||||
Sbjct: 435 acttggtgaagaaaagaccatagt 458

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                            
Query: 213      ccgaagaaccagagatggaccttccgaaggagatattcttgaaagactacaaaaaacccg 272
                ||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| || |
Sbjct: 28173363 ccgaagaaccagagatggatcttccaaaggagatattcctgaaagaatacaaaaagcctg 28173304

                                   
Query: 273      actacttgtttgacacggt 291
                | ||||| |||||| ||||
Sbjct: 28173303 attacttatttgactcggt 28173285



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 54/64 (84%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 294      atttagaatttcaacttggtgatgaaaagaccatagtcacttctaca-tagctgtatctc 352
                |||| |||||||||||||| || || || || ||||| || |||| | ||||||||||||
Sbjct: 28173045 atttggaatttcaacttggcgaagacaaaacaatagttacatctaaaatagctgtatctc 28172986

                    
Query: 353      cagg 356
                ||||
Sbjct: 28172985 cagg 28172982

>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                         
Query: 213   ccgaagaaccagagatggaccttccgaaggagatattcttgaaagactacaaaaaacccg 272
             ||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| || |
Sbjct: 56836 ccgaagaaccagagatggatcttccaaaggagatattcctgaaagaatacaaaaagcctg 56777

                                
Query: 273   actacttgtttgacacggt 291
             | ||||| |||||| ||||
Sbjct: 56776 attacttatttgactcggt 56758



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 54/64 (84%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 294   atttagaatttcaacttggtgatgaaaagaccatagtcacttctaca-tagctgtatctc 352
             |||| |||||||||||||| || || || || ||||| || |||| | ||||||||||||
Sbjct: 56518 atttggaatttcaacttggcgaagacaaaacaatagttacatctaaaatagctgtatctc 56459

                 
Query: 353   cagg 356
             ||||
Sbjct: 56458 cagg 56455

>emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on chromosome 1, complete
              sequence
          Length = 250586

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 294    atttagaatttcaacttggtga 315
              ||||||||||||||||||||||
Sbjct: 178373 atttagaatttcaacttggtga 178352

>emb|AL663047.15| Mouse DNA sequence from clone RP23-146J17 on chromosome 1 Contains the
             gene for a dynein cytoplasmic light polypeptide 1 (DNCL1)
             pseudogene, the gene for a ribosomal protein L18 (RPL18)
             pseudogene and the Ctla4 gene for cytotoxic
             T-lymphocyte-associated protein 4, complete sequence
          Length = 77653

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 294   atttagaatttcaacttggtga 315
             ||||||||||||||||||||||
Sbjct: 52215 atttagaatttcaacttggtga 52236

>emb|AL596283.10| Mouse DNA sequence from clone DN-257N2 on chromosome 1, complete
             sequence
          Length = 162143

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 294   atttagaatttcaacttggtga 315
             ||||||||||||||||||||||
Sbjct: 89615 atttagaatttcaacttggtga 89636

>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete
              sequence
          Length = 358943

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     caagtatcaaagattgccttt 33
              |||||||||||||||||||||
Sbjct: 203010 caagtatcaaagattgccttt 202990

>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome II, complete sequence
          Length = 350181

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     caagtatcaaagattgccttt 33
              |||||||||||||||||||||
Sbjct: 201198 caagtatcaaagattgccttt 201178

>gb|AC005215.2| Homo sapiens chromosome 5, BAC clone 89K19 (LBNL H179), complete
             sequence
          Length = 110312

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   ttcacactggacaggaacaaggtc 126
             |||||| |||||||||||||||||
Sbjct: 33004 ttcacagtggacaggaacaaggtc 33027

>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0024M06, complete sequence
          Length = 51144

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   acacggtggatttagaattt 304
             ||||||||||||||||||||
Sbjct: 22597 acacggtggatttagaattt 22578

>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24,
              complete sequence
          Length = 137721

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    acacggtggatttagaattt 304
              ||||||||||||||||||||
Sbjct: 123285 acacggtggatttagaattt 123266

>gb|AC084391.1| Mus musculus BAC clone RP23-294I17 from 1, complete sequence
          Length = 166182

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    ggttccccagggaacaaggactct 73
             |||||||||||| |||||||||||
Sbjct: 49940 ggttccccagggcacaaggactct 49917

>gb|AC183921.2| Pan troglodytes BAC clone CH251-617M1 from chromosome unknown, complete
             sequence
          Length = 188195

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   ttcacactggacaggaacaaggtc 126
             |||||| |||||||||||||||||
Sbjct: 44519 ttcacagtggacaggaacaaggtc 44542

>gb|AC160021.3| Pan troglodytes BAC clone CH251-564M21 from chromosome unknown, complete
              sequence
          Length = 201789

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    ttcacactggacaggaacaaggtc 126
              |||||| |||||||||||||||||
Sbjct: 195213 ttcacagtggacaggaacaaggtc 195236

>gb|AC016933.20| Homo sapiens 3 BAC RP11-166D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153763

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    tctcctcttcaaagaggggttccc 56
             |||| |||||||||||||||||||
Sbjct: 93915 tctcatcttcaaagaggggttccc 93892

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 140      tcattacatagttcaaagtc 159
                ||||||||||||||||||||
Sbjct: 27391527 tcattacatagttcaaagtc 27391546

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     acacggtggatttagaattt 304
               ||||||||||||||||||||
Sbjct: 7693670 acacggtggatttagaattt 7693689

>gb|AC010489.4|AC010489 Homo sapiens chromosome 5 clone CTD-2332G20, complete sequence
          Length = 146437

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   ttcacactggacaggaacaaggtc 126
             |||||| |||||||||||||||||
Sbjct: 57779 ttcacagtggacaggaacaaggtc 57756

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     ggtgatgaaaagaccatagt 330
               ||||||||||||||||||||
Sbjct: 2388691 ggtgatgaaaagaccatagt 2388672

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     acacggtggatttagaattt 304
               ||||||||||||||||||||
Sbjct: 7763757 acacggtggatttagaattt 7763776

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 140      tcattacatagttcaaagtc 159
                ||||||||||||||||||||
Sbjct: 27317127 tcattacatagttcaaagtc 27317146

>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124605

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   tcattacatagttcaaagtc 159
             ||||||||||||||||||||
Sbjct: 59847 tcattacatagttcaaagtc 59866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,246,326
Number of Sequences: 3902068
Number of extensions: 3246326
Number of successful extensions: 56766
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56671
Number of HSP's gapped (non-prelim): 91
length of query: 359
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 337
effective length of database: 17,147,199,772
effective search space: 5778606323164
effective search space used: 5778606323164
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)