ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 184 9e-44
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 184 9e-44
3gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 0.83
4gb|AC024794.1| Caenorhabditis elegans cosmid Y48G1BM, complete s... 40 3.3
5gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... 40 3.3
6gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, com... 40 3.3

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
           sequence
          Length = 2863

 Score =  184 bits (93), Expect = 9e-44
 Identities = 111/117 (94%)
 Strand = Plus / Plus

                                                                       
Query: 74  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 133
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                    
Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190
           |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117



 Score = 46.1 bits (23), Expect = 0.053
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 223 cgcctctttgcccccgccttcgccgtcgccg 253
           |||||||| |||||||||||||| |||||||
Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccg 180



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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit
           mRNA, complete cds
          Length = 2887

 Score =  184 bits (93), Expect = 9e-44
 Identities = 111/117 (94%)
 Strand = Plus / Plus

                                                                       
Query: 74  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 133
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                    
Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190
           |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117



 Score = 46.1 bits (23), Expect = 0.053
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 223 cgcctctttgcccccgccttcgccgtcgccg 253
           |||||||| |||||||||||||| |||||||
Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccg 180



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 230     ttgcccccgccttcgccgtcgccgt 254
               |||||| ||||||||||||||||||
Sbjct: 1991866 ttgccctcgccttcgccgtcgccgt 1991890



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>gb|AC024794.1| Caenorhabditis elegans cosmid Y48G1BM, complete sequence
          Length = 35030

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cccgccttcgccgtcgccgt 254
             ||||||||||||||||||||
Sbjct: 17487 cccgccttcgccgtcgccgt 17468



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>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence
          Length = 147107

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gacagaccagccagtgatca 181
             ||||||||||||||||||||
Sbjct: 15395 gacagaccagccagtgatca 15376



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>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence
          Length = 142102

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    gacagaccagccagtgatca 181
              ||||||||||||||||||||
Sbjct: 106152 gacagaccagccagtgatca 106133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,246,356
Number of Sequences: 3902068
Number of extensions: 1246356
Number of successful extensions: 23814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23779
Number of HSP's gapped (non-prelim): 35
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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