Clone Name | bastl28d05 |
---|---|
Clone Library Name | barley_pub |
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 184 bits (93), Expect = 9e-44 Identities = 111/117 (94%) Strand = Plus / Plus Query: 74 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 133 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 46.1 bits (23), Expect = 0.053 Identities = 29/31 (93%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccg 253 |||||||| |||||||||||||| ||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccg 180
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 184 bits (93), Expect = 9e-44 Identities = 111/117 (94%) Strand = Plus / Plus Query: 74 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 133 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 46.1 bits (23), Expect = 0.053 Identities = 29/31 (93%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccg 253 |||||||| |||||||||||||| ||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccg 180
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 ttgcccccgccttcgccgtcgccgt 254 |||||| |||||||||||||||||| Sbjct: 1991866 ttgccctcgccttcgccgtcgccgt 1991890
>gb|AC024794.1| Caenorhabditis elegans cosmid Y48G1BM, complete sequence Length = 35030 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cccgccttcgccgtcgccgt 254 |||||||||||||||||||| Sbjct: 17487 cccgccttcgccgtcgccgt 17468
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 15395 gacagaccagccagtgatca 15376
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 106152 gacagaccagccagtgatca 106133 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,246,356 Number of Sequences: 3902068 Number of extensions: 1246356 Number of successful extensions: 23814 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23779 Number of HSP's gapped (non-prelim): 35 length of query: 254 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 232 effective length of database: 17,147,199,772 effective search space: 3978150347104 effective search space used: 3978150347104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)