ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl28d04 |
|---|---|
| Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 239 bits (610), Expect = 3e-63 Identities = 115/136 (84%), Positives = 126/136 (92%) Frame = +2 Query: 53 MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRGIRLFDRRDYCTAHGENATFIA 232 M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPR +RLFDRRDY TAHGENATFIA Sbjct: 1 MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA 60 Query: 233 KAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTK 412 + YYHTM+ALRQLG +SDGI S SVS+AMFETIARN+LL+RTD TLELYEGSGS+WRLTK Sbjct: 61 RTYYHTMSALRQLGSSSDGILSASVSKAMFETIARNILLERTDCTLELYEGSGSNWRLTK 120 Query: 413 SGTPGNIGSFEDILFA 460 SGTPGNIGSFEDILFA Sbjct: 121 SGTPGNIGSFEDILFA 136
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 202 bits (515), Expect = 3e-52 Identities = 95/128 (74%), Positives = 111/128 (86%) Frame = +2 Query: 77 EGGKLPELKLDARQAQGFISFFKKLPKDPRGIRLFDRRDYCTAHGENATFIAKAYYHTMT 256 E KLPELKLDA+QAQGF+SF+K LP D R +R FDR+DY TAHGEN+ FIAK YYHT T Sbjct: 7 EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTT 66 Query: 257 ALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSGTPGNIG 436 ALRQLG S+ +SSVS+SR MFETIAR+LLL+R DHT+ELYEGSGS+WRL K+G+PGNIG Sbjct: 67 ALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNIG 126 Query: 437 SFEDILFA 460 SFED+LFA Sbjct: 127 SFEDVLFA 134
>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2| Length = 937 Score = 83.2 bits (204), Expect = 3e-16 Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 4/125 (3%) Frame = +2 Query: 92 PELKLDARQAQGFISFFKKLPK-DPRGIRLFDRRDYCTAHGENATFIAKAYYHTMTALRQ 268 PELK+D GFI F+K LP+ IR+FDR D+ TAHG++ATFIA+ Y T + +RQ Sbjct: 5 PELKVD--DEHGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62 Query: 269 LG-GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGS--SWRLTKSGTPGNIGS 439 LG + G+ SV+++ +F R L + +E++ +W++ K +PGN+ Sbjct: 63 LGRSDHTGLPSVTMTVTVFRQFLREALF-KLGKRIEIWASPSGRMNWKVVKQASPGNLQD 121 Query: 440 FEDIL 454 ED L Sbjct: 122 VEDEL 126
>MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 81.3 bits (199), Expect = 1e-15 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 9/129 (6%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRG-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L++ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127 Query: 431 IGSFEDILF 457 + FEDILF Sbjct: 128 LSQFEDILF 136
>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 935 Score = 80.9 bits (198), Expect = 2e-15 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 9/129 (6%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRG-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L+ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 S + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNKAGNKASKENEWYLAFKASPGN 127 Query: 431 IGSFEDILF 457 + FEDILF Sbjct: 128 LSQFEDILF 136
>MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 80.5 bits (197), Expect = 2e-15 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 9/129 (6%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRG-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L++ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127 Query: 431 IGSFEDILF 457 + FEDILF Sbjct: 128 LSQFEDILF 136
>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 77.4 bits (189), Expect = 2e-14 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 9/129 (6%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRG-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+LD+ GF+ FF+ +P+ P +RLFDR D+ TAH E+A A+ + T ++ +G Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAFKASPGN 127 Query: 431 IGSFEDILF 457 + FEDILF Sbjct: 128 LSQFEDILF 136
>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 75.5 bits (184), Expect = 7e-14 Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 9/129 (6%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRG-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L+ GF+ FF+ +P+ P + LFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + +V +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYKNKAGNKASKENDWYLAYKASPGN 127 Query: 431 IGSFEDILF 457 + FEDILF Sbjct: 128 LSQFEDILF 136
>MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1| Length = 917 Score = 71.2 bits (173), Expect = 1e-12 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Frame = +2 Query: 92 PELKLDARQAQGFISFFKKLPKDPRG-IRLFDRRDYCTAHG-ENATFIAKAYYHTMTALR 265 P L +D + FI F KL + P +R FD D T HG ++ +AK Y + + Sbjct: 12 PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71 Query: 266 QL--GGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSGTPGNIGS 439 L + + VS+S+ FE R LLL R ++ +E+Y + S W + G+PGN+ Sbjct: 72 ALLPDDKKETLQFVSMSKGNFELAVRELLLVR-NYRVEVYVKNSSDWEIEYRGSPGNLLQ 130 Query: 440 FEDILFA 460 FEDILF+ Sbjct: 131 FEDILFS 137
>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2| Length = 964 Score = 62.8 bits (151), Expect = 5e-10 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 11/132 (8%) Frame = +2 Query: 92 PELKL-DARQAQGFISFFKKLPKDP-RGIRLFDRRDYCTAHGENATFIAKAYYHTMTALR 265 PELK D + + F + LPK P + IRL D+ DY T G +A F+A + YHT + L+ Sbjct: 6 PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65 Query: 266 QLGGNSDGISS---------VSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSG 418 D +++ V+VS + T+ + LLD + +E+Y+ W+L KS Sbjct: 66 NC--QLDPVTAKNFHEPTKYVTVSLQVLATLLKLCLLD-LGYKVEIYD---KGWKLIKSA 119 Query: 419 TPGNIGSFEDIL 454 +PGNI +++ Sbjct: 120 SPGNIEQVNELM 131
>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2| Length = 982 Score = 61.2 bits (147), Expect = 1e-09 Identities = 34/109 (31%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Frame = +2 Query: 134 SFFKKLPKDPRGIRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSR 313 +F++K+PKD +R+FDR ++ A GE+A+F+A+ YHT + L+ N S ++S Sbjct: 20 NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKH--HNVSNTSYCNLSP 77 Query: 314 AMFETIARNLLLDRTDHTLELY--EGSGSSWRLTKSGTPGNIGSFEDIL 454 ++F A ++L + +E++ + + + L K +PGN+ ED+L Sbjct: 78 SLFIKFAEDVLSNLAKR-VEIWGANSAKTGFELLKQASPGNMQMLEDLL 125
>GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor independence 1)| Length = 422 Score = 32.7 bits (73), Expect = 0.53 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +1 Query: 19 PALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 126 PA P PA LYG +R A GG GA C A G Sbjct: 157 PAPEPGHPAALYGPKR--AAGGAGAGAPGSCSAGAG 190
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 32.3 bits (72), Expect = 0.69 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123 SP+RSP LPP+ L AG G+ P + + SP Sbjct: 356 SPNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESP 395
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 256 CLKATGR*L*WNLKCQC*QGYV*DHCPQPFVR 351 CL G + +CQC QG+ HC P+VR Sbjct: 198 CLNLPG-----SYRCQCGQGFTGQHCDSPYVR 224
>YEB0_YEAST (P40000) Hypothetical 13.5 kDa protein in GLC3-GCN4 intergenic| region Length = 116 Score = 30.0 bits (66), Expect = 3.4 Identities = 21/83 (25%), Positives = 33/83 (39%) Frame = +2 Query: 212 ENATFIAKAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG 391 EN+ ++ YY T R + GISS S ++F I + + E + + Sbjct: 22 ENSIYLVSLYYSFSTKCRAISMQEPGISSDSKFFSLFLIIRKVSVASDCRQLYECKKSNE 81 Query: 392 SSWRLTKSGTPGNIGSFEDILFA 460 + W K + SF IL A Sbjct: 82 NIWEYFKRRLETRLSSFSIILSA 104
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123 SP+RSP +PP+ L AG GK P + + SP Sbjct: 356 SPNRSPCVPPAPEVALPRPVTQGAGPGKCPSPNLQTQESP 395
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 30.0 bits (66), Expect = 3.4 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +1 Query: 16 SPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLFLQEVAE 156 SPAL S+PA G R +GG P Q++ A+PG L++V E Sbjct: 194 SPALTRSSPAPGSGYSR--SGGRSTPSTQSQRRAAPGEGGLLKDVLE 238
>RASH_MSVHA (P01115) Transforming protein p29 precursor [Contains: Transforming| protein p21] Length = 241 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +1 Query: 1 ISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHL 135 ++P R+PALP P G +GG +APG A EA + L Sbjct: 18 VAPVRAPALPRPAP----GAVAPASGGARAPGLAAPVEAMTEYKL 58
>FRPA_NEIMC (P55126) Iron-regulated protein frpA| Length = 1115 Score = 28.9 bits (63), Expect = 7.6 Identities = 23/86 (26%), Positives = 39/86 (45%) Frame = +2 Query: 203 AHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382 ++G+N A A + T+ + L N DGIS + R + E ++L L D L Sbjct: 386 SNGDNIINAADAAFQTLRVWQDL--NQDGISQANELRTLEELGIQSLDLAYKDVNKNLGN 443 Query: 383 GSGSSWRLTKSGTPGNIGSFEDILFA 460 G+ + + + + T G D+L A Sbjct: 444 GNTLAQQGSYTKTDGTTAKMGDLLLA 469
>MTHR1_MAIZE (Q9SE94) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (ZmMTHFR1) Length = 593 Score = 28.9 bits (63), Expect = 7.6 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Frame = +2 Query: 86 KLPELKLDARQAQGFISFFKKLPKDPRGIR-LFDRRDYCTAHGENATFIA-KAYYHTMTA 259 K+ E D R A F F PK G+ LF+R D AHG + I A T Sbjct: 6 KILEAAGDGRTAFSFEYF---PPKTEEGVENLFERMDRMVAHGPSFCDITWGAGGSTADL 62 Query: 260 LRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSGTP 424 ++ + V M N+ +++ DH LE + +G L G P Sbjct: 63 TLEIANRMQNMVCVET---MMHLTCTNMPVEKIDHALETIKSNGIQNVLALRGDP 114
>FRPC_NEIMC (P55127) Iron-regulated protein frpC| Length = 1829 Score = 28.9 bits (63), Expect = 7.6 Identities = 23/86 (26%), Positives = 39/86 (45%) Frame = +2 Query: 203 AHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382 ++G+N A A + T+ + L N DGIS + R + E ++L L D L Sbjct: 500 SNGDNIINAADAAFQTLRVWQDL--NQDGISQANELRTLEELGIQSLDLAYKDVNKNLGN 557 Query: 383 GSGSSWRLTKSGTPGNIGSFEDILFA 460 G+ + + + + T G D+L A Sbjct: 558 GNTLAQQGSYTKTDGTTAKMGDLLLA 583
>FRPC_NEIMB (Q9JYV5) Iron-regulated protein frpC| Length = 1829 Score = 28.9 bits (63), Expect = 7.6 Identities = 23/86 (26%), Positives = 39/86 (45%) Frame = +2 Query: 203 AHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 382 ++G+N A A + T+ + L N DGIS + R + E ++L L D L Sbjct: 500 SNGDNIINAADAAFQTLRVWQDL--NQDGISQANELRTLEELGIQSLDLAYKDVNKNLGN 557 Query: 383 GSGSSWRLTKSGTPGNIGSFEDILFA 460 G+ + + + + T G D+L A Sbjct: 558 GNTLAQQGSYTKTDGTTAKMGDLLLA 583
>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)| (dPKC53E(EY)) (Protein INAC) (Inactivation no after-potential C protein) (Photoreceptor-specific PKC) (Eye-PKC) Length = 700 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 25 LPPSTPAGLYGQRRLLAGGGKAPG 96 LPPS P+ G + AG GK PG Sbjct: 14 LPPSVPSAAPGAKAPAAGAGKGPG 37
>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein| matotopetli) Length = 814 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -2 Query: 299 HLRFHQSYRPVALRQSLCD-SMPLQ*RLHSHHEQCN 195 HLRFHQ +P ++ CD ++ L+ H +C+ Sbjct: 529 HLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCH 564
>ROM2_YEAST (P51862) RHO1 GDP-GTP exchange protein 2| Length = 1356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/44 (36%), Positives = 17/44 (38%) Frame = +1 Query: 7 PSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLF 138 P R P+LP AGL Q G QAR GF F Sbjct: 188 PKRKPSLPQLALAGLKKQSSFSTGSASTTPTQARKSPLQGFGFF 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,529,408 Number of Sequences: 219361 Number of extensions: 1438059 Number of successful extensions: 4176 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4152 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
