ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome... 327 2e-86
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
3emb|AJ238785.1|ZMA238785 Zea mays mus1 gene, exons 1-13 260 4e-66
4gb|AY110865.1| Zea mays CL588_1 mRNA sequence 190 3e-45
5gb|DQ117988.1| Physcomitrella patens DNA mismatch repair protein... 60 7e-06
6ref|NM_113607.3| Arabidopsis thaliana MSH2 (MUTS HOMOLOG 2); ATP... 50 0.007
7dbj|AP001303.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 50 0.007
8gb|AF109243.1|AF109243 Arabidopsis thaliana mismatch repair prot... 50 0.007
9gb|AF003005.1|AF003005 Arabidopsis thaliana MutS homolog 2 (atMS... 50 0.007
10gb|AF002706.1|AF002706 Arabidopsis thaliana MutS homolog 2 (MSH2... 50 0.007
11gb|AF026549.1|AF026549 Arabidopsis thaliana DNA mismatch repair ... 50 0.007
12gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome... 42 1.7
13ref|NM_074018.3| Caenorhabditis elegans C.Elegans Homeobox famil... 42 1.7
14emb|Z79757.1|CEF55B12 Caenorhabditis elegans Cosmid F55B12, comp... 42 1.7
15gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, com... 42 1.7
16gb|AF026056.1|AF026056 Caenorhabditis elegans NK-2 class homeodo... 42 1.7
17gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, com... 40 6.6
18gb|AC159998.6| Mus musculus BAC clone RP24-576J22 from chromosom... 40 6.6
19gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, co... 40 6.6
20gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, com... 40 6.6
21gb|AY650007.1| Petunia x hybrida DNA mismatch repair protein (MS... 40 6.6
22gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosom... 40 6.6
23emb|AL023655.1|HS242N11 Human DNA sequence from clone RP1-242N11... 40 6.6
24emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in l... 40 6.6
25gb|AC010526.7| Homo sapiens chromosome 19 clone LLNLR-301A8, com... 40 6.6
26gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosom... 40 6.6
27dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.6
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
29dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.6 
>gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0522C01,
              complete sequence
          Length = 136120

 Score =  327 bits (165), Expect = 2e-86
 Identities = 256/285 (89%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                          
Query: 190    ggattattgcactgctcatggtgagaatgcaacctttattgcaaaggcatactatcacac 249
              |||||||| |||||||||||| |||||||| || || ||||||||   ||||||||||||
Sbjct: 117890 ggattattacactgctcatggagagaatgccacattcattgcaaaaatatactatcacac 117949

                                                                          
Query: 250    aatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtgtcagtgttag 309
              |||| |||||||| | ||| | ||  | |||||||||||| |||||||||||||||| ||
Sbjct: 117950 aatgtctgccttacgccaattaggtagcaactctgatggactctcaagtgtcagtgtgag 118009

                                                                          
Query: 310    cagggctatgtttgagaccattgcccgcaaccttttgttagataggacggaccatacact 369
              || | |||||||||||||||| |||||||||||||||||||| ||||| |||| |||| |
Sbjct: 118010 caagactatgtttgagaccatcgcccgcaaccttttgttagagaggacagaccgtacatt 118069

                                                                          
Query: 370    ggagctctatgagggaagtgggtcaagttggaggttaacaaaatctggaacacctggaaa 429
              ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 118070 ggaactctatgagggaagtgggtctagttggaggttaacaaaatctggaacacctggaaa 118129

                                                           
Query: 430    cattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
               ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 118130 tattggcagttttgaagatattctgtttgcaaacaatgacatgca 118174



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                         
Query: 105    tagatgcgaggcaagcccagggtttcatctctttcttcaagaa 147
              |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 116653 tagatgcgaggcaagcgcagggcttcatctctttcttcaagaa 116695



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 60     gcgaagacttcttgccggaggggggaaagctcccggagctcaagctag 107
              |||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 116533 gcgacgacttcttgccggagggcggcaagctccccgagctcaagctag 116580
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  327 bits (165), Expect = 2e-86
 Identities = 256/285 (89%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                            
Query: 190      ggattattgcactgctcatggtgagaatgcaacctttattgcaaaggcatactatcacac 249
                |||||||| |||||||||||| |||||||| || || ||||||||   ||||||||||||
Sbjct: 11090600 ggattattacactgctcatggagagaatgccacattcattgcaaaaatatactatcacac 11090659

                                                                            
Query: 250      aatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtgtcagtgttag 309
                |||| |||||||| | ||| | ||  | |||||||||||| |||||||||||||||| ||
Sbjct: 11090660 aatgtctgccttacgccaattaggtagcaactctgatggactctcaagtgtcagtgtgag 11090719

                                                                            
Query: 310      cagggctatgtttgagaccattgcccgcaaccttttgttagataggacggaccatacact 369
                || | |||||||||||||||| |||||||||||||||||||| ||||| |||| |||| |
Sbjct: 11090720 caagactatgtttgagaccatcgcccgcaaccttttgttagagaggacagaccgtacatt 11090779

                                                                            
Query: 370      ggagctctatgagggaagtgggtcaagttggaggttaacaaaatctggaacacctggaaa 429
                ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11090780 ggaactctatgagggaagtgggtctagttggaggttaacaaaatctggaacacctggaaa 11090839

                                                             
Query: 430      cattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
                 ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11090840 tattggcagttttgaagatattctgtttgcaaacaatgacatgca 11090884



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                           
Query: 105      tagatgcgaggcaagcccagggtttcatctctttcttcaagaa 147
                |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 11089363 tagatgcgaggcaagcgcagggcttcatctctttcttcaagaa 11089405



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 60       gcgaagacttcttgccggaggggggaaagctcccggagctcaagctag 107
                |||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 11089243 gcgacgacttcttgccggagggcggcaagctccccgagctcaagctag 11089290
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>emb|AJ238785.1|ZMA238785 Zea mays mus1 gene, exons 1-13
          Length = 10376

 Score =  260 bits (131), Expect = 4e-66
 Identities = 246/283 (86%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                        
Query: 190  ggattattgcactgctcatggtgagaatgcaacctttattgcaaaggcatactatcacac 249
            |||||||| |||||| ||||| |||||||| || ||||| |||| | ||||||| |||||
Sbjct: 1673 ggattattacactgcccatggcgagaatgctacgtttatcgcaaggacatactaccacac 1732

                                                                        
Query: 250  aatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtgtcagtgttag 309
            |||| |||||||| | ||||| ||  | | |||||||||||||| ||||| ||| || ||
Sbjct: 1733 aatgtctgccttacgtcaactaggtagcagctctgatggaatcttaagtgccagcgtgag 1792

                                                                        
Query: 310  cagggctatgtttgagaccattgcccgcaaccttttgttagataggacggaccatacact 369
            || |||||||||||||||||||||||||||| ||||||| || ||||| |||  |||| |
Sbjct: 1793 caaggctatgtttgagaccattgcccgcaacattttgttggaaaggactgactgtacatt 1852

                                                                        
Query: 370  ggagctctatgagggaagtgggtcaagttggaggttaacaaaatctggaacacctggaaa 429
            ||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||||||
Sbjct: 1853 ggaactctatgagggaagtgggtcaaattggaggttaacaaagtccggaacacctggaaa 1912

                                                       
Query: 430  cattggcagttttgaagatattctgtttgc-aacaatgacatg 471
             ||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 1913 tattggtagttttgaagacattctgtttgcaaacaatgacatg 1955



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 106  agatgcgaggcaagcccagggtttcatctctttcttcaagaagttgccg 154
            ||||||||| ||||| |||||||||||||| |||||||||||| |||||
Sbjct: 1130 agatgcgagacaagcgcagggtttcatctccttcttcaagaagctgccg 1178
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>gb|AY110865.1| Zea mays CL588_1 mRNA sequence
          Length = 3331

 Score =  190 bits (96), Expect = 3e-45
 Identities = 204/240 (85%)
 Strand = Plus / Plus

                                                                       
Query: 60  gcgaagacttcttgccggaggggggaaagctcccggagctcaagctagatgcgaggcaag 119
           |||| ||||||  ||||||||| || |||||||| ||| |||||||||||||||| ||||
Sbjct: 88  gcgacgacttcacgccggagggcggcaagctccccgagttcaagctagatgcgagacaag 147

                                                                       
Query: 120 cccagggtttcatctctttcttcaagaagttgccgaaggatcctcggggcattcgtctat 179
           | |||||||||||||| |||||||||||| ||||| ||||||| |||| | ||||||| |
Sbjct: 148 cgcagggtttcatctccttcttcaagaagctgccgcaggatccccgggccgttcgtctct 207

                                                                       
Query: 180 ttgatcgccgggattattgcactgctcatggtgagaatgcaacctttattgcaaaggcat 239
           | |||||| ||||||||| |||||| ||||| |||||||| || ||||| |||| | |||
Sbjct: 208 tcgatcgcagggattattacactgcccatggcgagaatgctacgtttatcgcaaggacat 267

                                                                       
Query: 240 actatcacacaatgactgccttaaggcaactgggcggtaactctgatggaatctcaagtg 299
           |||| ||||||||| |||||||| | ||||| ||  | | |||||||||||||| |||||
Sbjct: 268 actaccacacaatgtctgccttacgtcaactaggtagcagctctgatggaatcttaagtg 327



 Score =  137 bits (69), Expect = 4e-29
 Identities = 100/109 (91%), Gaps = 1/109 (0%)
 Strand = Plus / Plus

                                                                       
Query: 364 tacactggagctctatgagggaagtgggtcaagttggaggttaacaaaatctggaacacc 423
           |||| |||| |||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 392 tacattggaactctatgagggaagtgggtcaaattggaggttaacaaagtccggaacacc 451

                                                            
Query: 424 tggaaacattggcagttttgaagatattctgtttgc-aacaatgacatg 471
           |||||| ||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 452 tggaaatattggtagttttgaagacattctgtttgcaaacaatgacatg 500
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>gb|DQ117988.1| Physcomitrella patens DNA mismatch repair protein MSH2 gene, complete
            cds
          Length = 6681

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 190  ggattattgcactgctcatggtgagaatgcaacctttattgc 231
            |||||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 1333 ggattatttcactgctcatggtgataatgcaaccttcattgc 1374
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>ref|NM_113607.3| Arabidopsis thaliana MSH2 (MUTS HOMOLOG 2); ATP binding / damaged
           DNA binding AT3G18524 (MSH2) mRNA, complete cds
          Length = 3114

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                
Query: 422 cctggaaacattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
           |||||||||||||| || ||||||||| || ||||||| |||||||| |||||
Sbjct: 523 cctggaaacattggaagctttgaagatgttttgtttgcaaacaatgaaatgca 575
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>dbj|AP001303.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24M9
          Length = 45292

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 422 cctggaaacattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
           |||||||||||||| || ||||||||| || ||||||| |||||||| |||||
Sbjct: 741 cctggaaacattggaagctttgaagatgttttgtttgcaaacaatgaaatgca 689
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>gb|AF109243.1|AF109243 Arabidopsis thaliana mismatch repair protein (MSH2) gene, complete
            cds
          Length = 5307

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                 
Query: 422  cctggaaacattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
            |||||||||||||| || ||||||||| || ||||||| |||||||| |||||
Sbjct: 1355 cctggaaacattggaagctttgaagatgttttgtttgcaaacaatgaaatgca 1407
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>gb|AF003005.1|AF003005 Arabidopsis thaliana MutS homolog 2 (atMSH2) gene, complete cds
          Length = 5317

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                 
Query: 422  cctggaaacattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
            |||||||||||||| || ||||||||| || ||||||| |||||||| |||||
Sbjct: 1483 cctggaaacattggaagctttgaagatgttttgtttgcaaacaatgaaatgca 1535
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>gb|AF002706.1|AF002706 Arabidopsis thaliana MutS homolog 2 (MSH2) mRNA, complete cds
          Length = 3125

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                
Query: 422 cctggaaacattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
           |||||||||||||| || ||||||||| || ||||||| |||||||| |||||
Sbjct: 522 cctggaaacattggaagctttgaagatgttttgtttgcaaacaatgaaatgca 574
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>gb|AF026549.1|AF026549 Arabidopsis thaliana DNA mismatch repair protein MSH2 (MSH2) mRNA,
           complete cds
          Length = 3039

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                
Query: 422 cctggaaacattggcagttttgaagatattctgtttgc-aacaatgacatgca 473
           |||||||||||||| || ||||||||| || ||||||| |||||||| |||||
Sbjct: 502 cctggaaacattggaagctttgaagatgttttgtttgcaaacaatgaaatgca 554
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>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete
           sequence
          Length = 191814

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 129 tcatctctttcttcaagaagttgcc 153
           |||||||||||||| ||||||||||
Sbjct: 816 tcatctctttcttctagaagttgcc 792
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>ref|NM_074018.3| Caenorhabditis elegans C.Elegans Homeobox family member (ceh-24)
           (ceh-24) mRNA, complete cds
          Length = 1045

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 408 caaaatctggaacacctggaa 428
           |||||||||||||||||||||
Sbjct: 281 caaaatctggaacacctggaa 301
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>emb|Z79757.1|CEF55B12 Caenorhabditis elegans Cosmid F55B12, complete sequence
          Length = 32251

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 408  caaaatctggaacacctggaa 428
            |||||||||||||||||||||
Sbjct: 4312 caaaatctggaacacctggaa 4332
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>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence
          Length = 168722

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 129   tcatctctttcttcaagaagttgcc 153
             |||||||||||||| ||||||||||
Sbjct: 93812 tcatctctttcttctagaagttgcc 93836
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>gb|AF026056.1|AF026056 Caenorhabditis elegans NK-2 class homeodomain protein (ceh-24)
           mRNA, complete cds
          Length = 1061

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 408 caaaatctggaacacctggaa 428
           |||||||||||||||||||||
Sbjct: 281 caaaatctggaacacctggaa 301
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>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    ttcatctctttcttcaagaa 147
              ||||||||||||||||||||
Sbjct: 188874 ttcatctctttcttcaagaa 188893
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>gb|AC159998.6| Mus musculus BAC clone RP24-576J22 from chromosome 10, complete
             sequence
          Length = 166313

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   ggaaacattggcagttttga 444
             ||||||||||||||||||||
Sbjct: 43143 ggaaacattggcagttttga 43124
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>gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, complete sequence
          Length = 210235

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    ttcatctctttcttcaagaa 147
              ||||||||||||||||||||
Sbjct: 148339 ttcatctctttcttcaagaa 148320
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>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence
          Length = 238598

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ttggcagttttgaagatatt 451
             ||||||||||||||||||||
Sbjct: 32551 ttggcagttttgaagatatt 32532
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>gb|AY650007.1| Petunia x hybrida DNA mismatch repair protein (MSH2) mRNA, complete
           cds
          Length = 3080

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 171 ttcgtctatttgatcgccgggattattgcactgctcatgg 210
           ||||||| |||||||| ||||| ||||  |||||||||||
Sbjct: 209 ttcgtctctttgatcgtcgggactattatactgctcatgg 248
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>gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosome 16, complete
             sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   gtttcatctctttcttcaag 145
             ||||||||||||||||||||
Sbjct: 88828 gtttcatctctttcttcaag 88847
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>emb|AL023655.1|HS242N11 Human DNA sequence from clone RP1-242N11 on chromosome 6p22.3-23,
              complete sequence
          Length = 167514

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gtgttagcagggctatgttt 322
              ||||||||||||||||||||
Sbjct: 131659 gtgttagcagggctatgttt 131640
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>emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in linkage group 21, complete
              sequence
          Length = 263757

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 298    tgtcagtgttagcagggctatgtt 321
              ||||||||||||||||||| ||||
Sbjct: 249470 tgtcagtgttagcagggctctgtt 249447
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>gb|AC010526.7| Homo sapiens chromosome 19 clone LLNLR-301A8, complete sequence
          Length = 37486

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   aacattggcagttttgaaga 447
             ||||||||||||||||||||
Sbjct: 10967 aacattggcagttttgaaga 10986
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>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence
          Length = 186410

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ttggcagttttgaagatatt 451
             ||||||||||||||||||||
Sbjct: 75670 ttggcagttttgaagatatt 75689
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      tcgccgagcaggtcgcccgc 23
              ||||||||||||||||||||
Sbjct: 203949 tcgccgagcaggtcgcccgc 203968
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       atttcgccgagcaggtcgcc 20
               ||||||||||||||||||||
Sbjct: 1894081 atttcgccgagcaggtcgcc 1894062
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>dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-114K7, complete
             sequence
          Length = 127508

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   acattggcagttttgaagat 448
             ||||||||||||||||||||
Sbjct: 72233 acattggcagttttgaagat 72214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,967,601
Number of Sequences: 3902068
Number of extensions: 3967601
Number of successful extensions: 66273
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66127
Number of HSP's gapped (non-prelim): 142
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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