ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 9e-45
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 186 4e-44
3gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 186 4e-44
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
5ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA 76 9e-11
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
7dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
8dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
9gb|AC015688.11| Homo sapiens chromosome 17, clone RP11-19P22, co... 44 0.33
10ref|XM_475198.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
11ref|XM_469663.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
12gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
13gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
14gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic ... 42 1.3
15gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 42 1.3
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.3
17gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, com... 42 1.3
18gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
19gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
22dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
24dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
25dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
26dbj|AK103197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
27dbj|AK100181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
28dbj|AK069649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
31emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.3
32emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471... 42 1.3
33ref|NM_185089.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
34ref|XM_464325.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
35ref|XM_463623.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
36emb|CR726813.2|CNS0GNR7 Tetraodon nigroviridis full-length cDNA 40 5.2
37emb|AL139239.18| Human DNA sequence from clone RP11-19C6 on chro... 40 5.2
38gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 40 5.2
39emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.2
40emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro... 40 5.2
41gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.2
42gb|AF391800.1|AF391800 Homo sapiens aortic aneurysm antigenic pr... 40 5.2
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
44dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47gb|AC007131.4| Homo sapiens BAC clone RP11-179A20 from 2, comple... 40 5.2
48gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 40 5.2
49dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.2
50dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
51dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
52dbj|AK109894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
53dbj|AK103300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
54dbj|AK066552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2 
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
           insert sequence
          Length = 3325

 Score =  188 bits (95), Expect = 9e-45
 Identities = 203/239 (84%)
 Strand = Plus / Plus

                                                                       
Query: 136 gccgccgcccaccccggtggccagttctgctggtgcctcatcacctgctatgcaaattaa 195
           |||||| || || ||||| || |||||||| ||  |||| |||||||||||||||  |||
Sbjct: 124 gccgcctcctacgccggttgcaagttctgcaggaccctcgtcacctgctatgcaagctaa 183

                                                                       
Query: 196 tatagtaagcatagattggctgggtaacagacaggcttccagggttgattcctcatcaca 255
           | | |  ||||||||||||  ||||| |||||| |||||||| |||||||||||||||||
Sbjct: 184 tgttgccagcatagattggtcgggtagcagacaagcttccagagttgattcctcatcaca 243

                                                                       
Query: 256 cgttgcaccacatgcctatgggcctgctcatagctttgatgctgctggaactgctttgga 315
            ||||| || |||||| ||  |||| ||||||| || |||||  ||||||||||||||||
Sbjct: 244 tgttgctccgcatgcccatcagccttctcatagtttcgatgccactggaactgctttgga 303

                                                                      
Query: 316 ttctgcaccatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacat 374
           ||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 304 ttctgcaccgtcatgtaggccatgggaacgcggagacttacttcgtcgactggcaacat 362



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 65  atgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 110
           |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 83  atgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 128
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  186 bits (94), Expect = 4e-44
 Identities = 187/218 (85%)
 Strand = Plus / Minus

                                                                            
Query: 157      cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 216
                ||||||||| ||  |||| |||||||||||||||  |||| | |  ||||||||||||  
Sbjct: 32294223 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 32294164

                                                                            
Query: 217      gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 276
                ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| ||  
Sbjct: 32294163 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 32294104

                                                                            
Query: 277      gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 336
                |||| ||||||| || |||||  ||||||||||||||||||||||||| || ||||| ||
Sbjct: 32294103 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 32294044

                                                      
Query: 337      atgggagcgtggagacttacttcgtcgactggcaacat 374
                |||||| || ||||||||||||||||||||||||||||
Sbjct: 32294043 atgggaacgcggagacttacttcgtcgactggcaacat 32294006



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                              
Query: 65       atgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 110
                |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 32295024 atgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 32294979



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 128      tcgtcgtcgccgccgcccacc 148
                |||||||||||||||||||||
Sbjct: 30076743 tcgtcgtcgccgccgcccacc 30076723



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      cgtccggtcgtcgtcgccgccgcc 144
                |||| |||||||||||||||||||
Sbjct: 34592191 cgtctggtcgtcgtcgccgccgcc 34592168
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score =  186 bits (94), Expect = 4e-44
 Identities = 187/218 (85%)
 Strand = Plus / Minus

                                                                         
Query: 157   cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 216
             ||||||||| ||  |||| |||||||||||||||  |||| | |  ||||||||||||  
Sbjct: 27990 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 27931

                                                                         
Query: 217   gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 276
             ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| ||  
Sbjct: 27930 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 27871

                                                                         
Query: 277   gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 336
             |||| ||||||| || |||||  ||||||||||||||||||||||||| || ||||| ||
Sbjct: 27870 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 27811

                                                   
Query: 337   atgggagcgtggagacttacttcgtcgactggcaacat 374
             |||||| || ||||||||||||||||||||||||||||
Sbjct: 27810 atgggaacgcggagacttacttcgtcgactggcaacat 27773



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                           
Query: 65    atgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 110
             |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 28791 atgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 28746
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  186 bits (94), Expect = 4e-44
 Identities = 187/218 (85%)
 Strand = Plus / Minus

                                                                            
Query: 157      cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 216
                ||||||||| ||  |||| |||||||||||||||  |||| | |  ||||||||||||  
Sbjct: 32384733 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 32384674

                                                                            
Query: 217      gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 276
                ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| ||  
Sbjct: 32384673 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 32384614

                                                                            
Query: 277      gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 336
                |||| ||||||| || |||||  ||||||||||||||||||||||||| || ||||| ||
Sbjct: 32384613 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 32384554

                                                      
Query: 337      atgggagcgtggagacttacttcgtcgactggcaacat 374
                |||||| || ||||||||||||||||||||||||||||
Sbjct: 32384553 atgggaacgcggagacttacttcgtcgactggcaacat 32384516



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                              
Query: 65       atgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 110
                |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 32385534 atgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 32385489



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 128      tcgtcgtcgccgccgcccacc 148
                |||||||||||||||||||||
Sbjct: 30168315 tcgtcgtcgccgccgcccacc 30168295



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      cgtccggtcgtcgtcgccgccgcc 144
                |||| |||||||||||||||||||
Sbjct: 34682263 cgtctggtcgtcgtcgccgccgcc 34682240
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>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 322 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 381
           ||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||  |
Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382

                 
Query: 382 ttcaac 387
           ||||||
Sbjct: 383 ttcaac 388
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                           
Query: 322     accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 381
               ||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||  |
Sbjct: 2671434 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 2671375

                     
Query: 382     ttcaac 387
               ||||||
Sbjct: 2671374 ttcaac 2671369
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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 322   accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 381
             ||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||  |
Sbjct: 97152 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 97093

                   
Query: 382   ttcaac 387
             ||||||
Sbjct: 97092 ttcaac 97087
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>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
           insert sequence
          Length = 3250

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 322 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 381
           ||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||  |
Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382

                 
Query: 382 ttcaac 387
           ||||||
Sbjct: 383 ttcaac 388
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>gb|AC015688.11| Homo sapiens chromosome 17, clone RP11-19P22, complete sequence
          Length = 152351

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 274   tgggcctgctcatagctttgatgctgctgg 303
             ||||||||||||| |||||| |||||||||
Sbjct: 77109 tgggcctgctcatggctttgttgctgctgg 77138
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>ref|XM_475198.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  agctcgtcgggggcggcggcc 103
           |||||||||||||||||||||
Sbjct: 131 agctcgtcgggggcggcggcc 151
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>ref|XM_469663.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 513

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 128 tcgtcgtcgccgccgcccacc 148
           |||||||||||||||||||||
Sbjct: 251 tcgtcgtcgccgccgcccacc 231
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 115   cgccgtcgtccggtcgtcgtcgccg 139
             ||||||||||| |||||||||||||
Sbjct: 53918 cgccgtcgtcccgtcgtcgtcgccg 53894
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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0092G21, complete sequence
          Length = 151267

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    agctcgtcgggggcggcggcc 103
             |||||||||||||||||||||
Sbjct: 91058 agctcgtcgggggcggcggcc 91038
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>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete
              sequence
          Length = 163972

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    tcgtcgtcgccgccgcccacc 148
              |||||||||||||||||||||
Sbjct: 147152 tcgtcgtcgccgccgcccacc 147172
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   tcgtcgtcgccgccgcccacc 148
             |||||||||||||||||||||
Sbjct: 30858 tcgtcgtcgccgccgcccacc 30878
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 96      cggcggccgagccgcaggtcgccgt 120
               |||||||| ||||||||||||||||
Sbjct: 3529191 cggcggccaagccgcaggtcgccgt 3529167
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>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence
          Length = 170554

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    ttggctgggtaacagacaggc 231
              |||||||||||||||||||||
Sbjct: 156191 ttggctgggtaacagacaggc 156211
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>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, complete sequence
          Length = 152272

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   gtcgtcgtcgccgccgcccac 147
             |||||||||||||||||||||
Sbjct: 73758 gtcgtcgtcgccgccgcccac 73778
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>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, sequencing in progress, complete sequence
          Length = 152272

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   gtcgtcgtcgccgccgcccac 147
             |||||||||||||||||||||
Sbjct: 73758 gtcgtcgtcgccgccgcccac 73778
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 124     ccggtcgtcgtcgccgccgcc 144
               |||||||||||||||||||||
Sbjct: 9064357 ccggtcgtcgtcgccgccgcc 9064337
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 127      gtcgtcgtcgccgccgcccac 147
                |||||||||||||||||||||
Sbjct: 21071443 gtcgtcgtcgccgccgcccac 21071463
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 83       agctcgtcgggggcggcggcc 103
                |||||||||||||||||||||
Sbjct: 19169160 agctcgtcgggggcggcggcc 19169140



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 115     cgccgtcgtccggtcgtcgtcgccg 139
               ||||||||||| |||||||||||||
Sbjct: 4167439 cgccgtcgtcccgtcgtcgtcgccg 4167415
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 128      tcgtcgtcgccgccgcccacc 148
                |||||||||||||||||||||
Sbjct: 12640654 tcgtcgtcgccgccgcccacc 12640634



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 115     cgccgtcgtccggtcgtcgtcgccgccg 142
               ||||||||||| |||||||||| |||||
Sbjct: 4483425 cgccgtcgtccagtcgtcgtcgtcgccg 4483398
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>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   tcgtcgtcgccgccgcccacc 148
             |||||||||||||||||||||
Sbjct: 37713 tcgtcgtcgccgccgcccacc 37693
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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    tcgtcgtcgccgccgcccacc 148
              |||||||||||||||||||||
Sbjct: 145187 tcgtcgtcgccgccgcccacc 145167
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>dbj|AK103197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A02, full
           insert sequence
          Length = 1058

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 cgccgtcgtccggtcgtcgtcgccg 139
           ||||||||||| |||||||||||||
Sbjct: 274 cgccgtcgtcccgtcgtcgtcgccg 298
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>dbj|AK100181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B10, full
           insert sequence
          Length = 2205

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  agctcgtcgggggcggcggcc 103
           |||||||||||||||||||||
Sbjct: 194 agctcgtcgggggcggcggcc 214
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>dbj|AK069649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B11, full
           insert sequence
          Length = 2205

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  agctcgtcgggggcggcggcc 103
           |||||||||||||||||||||
Sbjct: 194 agctcgtcgggggcggcggcc 214
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 127      gtcgtcgtcgccgccgcccac 147
                |||||||||||||||||||||
Sbjct: 21381684 gtcgtcgtcgccgccgcccac 21381704
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 124     ccggtcgtcgtcgccgccgcc 144
               |||||||||||||||||||||
Sbjct: 9064242 ccggtcgtcgtcgccgccgcc 9064222
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>emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb0026N09 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 135462

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    ccggtcgtcgtcgccgccgcc 144
              |||||||||||||||||||||
Sbjct: 133126 ccggtcgtcgtcgccgccgcc 133106
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>emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471_C07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103007

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   ccggtcgtcgtcgccgccgcc 144
             |||||||||||||||||||||
Sbjct: 53736 ccggtcgtcgtcgccgccgcc 53756
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>ref|NM_185089.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 cgtccggtcgtcgtcgccgccgcc 144
           |||| |||||||||||||||||||
Sbjct: 19  cgtctggtcgtcgtcgccgccgcc 42
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>ref|XM_464325.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 115  cgccgtcgtccggtcgtcgtcgccgccg 142
            ||||||||||| |||||||||| |||||
Sbjct: 1224 cgccgtcgtccagtcgtcgtcgtcgccg 1197
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>ref|XM_463623.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 cggtcgtcgtcgccgccgcc 144
           ||||||||||||||||||||
Sbjct: 566 cggtcgtcgtcgccgccgcc 585
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>emb|CR726813.2|CNS0GNR7 Tetraodon nigroviridis full-length cDNA
          Length = 1453

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 ggtcgtcgtcgccgccgccc 145
           ||||||||||||||||||||
Sbjct: 363 ggtcgtcgtcgccgccgccc 344
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>emb|AL139239.18| Human DNA sequence from clone RP11-19C6 on chromosome 10 Contains the 5'
              end of the CRTAC1 gene for cartilage acidic protein 1 and
              two CpG islands, complete sequence
          Length = 161235

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 134    tcgccgccgcccaccccggtggcc 157
              ||||||||||||||||| ||||||
Sbjct: 160325 tcgccgccgcccaccccagtggcc 160302
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 121   cgtccggtcgtcgtcgccgccgcc 144
             |||| |||||||||||||||||||
Sbjct: 49908 cgtctggtcgtcgtcgccgccgcc 49885
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     cgccgtcgtccggtcgtcgt 134
               ||||||||||||||||||||
Sbjct: 1504377 cgccgtcgtccggtcgtcgt 1504396
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>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
          Length = 984602

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    tatgcaaattaatatagtaa 203
              ||||||||||||||||||||
Sbjct: 924474 tatgcaaattaatatagtaa 924493
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 144     ccaccccggtggccagttctgctg 167
               |||||| |||||||||||||||||
Sbjct: 2792491 ccacccaggtggccagttctgctg 2792468
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>gb|AF391800.1|AF391800 Homo sapiens aortic aneurysm antigenic protein clone 4 mRNA,
           partial cds
          Length = 198

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 ctgggtaacagacaggcttccagg 238
           |||| |||||||||||||||||||
Sbjct: 69  ctggttaacagacaggcttccagg 46
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 125      cggtcgtcgtcgccgccgcc 144
                ||||||||||||||||||||
Sbjct: 40135199 cggtcgtcgtcgccgccgcc 40135180



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 35/39 (89%), Gaps = 2/39 (5%)
 Strand = Plus / Plus

                                                       
Query: 106      gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 144
                ||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 38884500 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 38884536
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   cggtcgtcgtcgccgccgcc 144
             ||||||||||||||||||||
Sbjct: 78283 cggtcgtcgtcgccgccgcc 78264
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 35/39 (89%), Gaps = 2/39 (5%)
 Strand = Plus / Plus

                                                     
Query: 106    gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 144
              ||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 157382 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 157418
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 125 cggtcgtcgtcgccgccgcc 144
           ||||||||||||||||||||
Sbjct: 977 cggtcgtcgtcgccgccgcc 958
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>gb|AC007131.4| Homo sapiens BAC clone RP11-179A20 from 2, complete sequence
          Length = 160087

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  caaattaatatagtaagcat 207
            ||||||||||||||||||||
Sbjct: 9470 caaattaatatagtaagcat 9451
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
             sequence
          Length = 129302

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   cgtccggtcgtcgtcgccgccgcc 144
             |||| |||||||||||||||||||
Sbjct: 51142 cgtctggtcgtcgtcgccgccgcc 51165
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 122     gtccggtcgtcgtcgccgccgccc 145
               ||||||||| ||||||||||||||
Sbjct: 3302897 gtccggtcgccgtcgccgccgccc 3302920
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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696G06
          Length = 142571

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 35/39 (89%), Gaps = 2/39 (5%)
 Strand = Plus / Plus

                                                    
Query: 106   gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 144
             ||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 49286 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 49322
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1297_C09
          Length = 163378

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 115   cgccgtcgtccggtcgtcgtcgccgccg 142
             ||||||||||| |||||||||| |||||
Sbjct: 18804 cgccgtcgtccagtcgtcgtcgtcgccg 18777
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>dbj|AK109894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E11, full
           insert sequence
          Length = 699

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 cgtccggtcgtcgtcgccgccgcc 144
           |||| |||||||||||||||||||
Sbjct: 49  cgtctggtcgtcgtcgccgccgcc 72
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>dbj|AK103300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125C09, full
           insert sequence
          Length = 933

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 35/39 (89%), Gaps = 2/39 (5%)
 Strand = Plus / Plus

                                                  
Query: 106 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 144
           ||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 92  gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 128
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>dbj|AK066552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K05, full
           insert sequence
          Length = 1419

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 cggtcgtcgtcgccgccgcc 144
           ||||||||||||||||||||
Sbjct: 682 cggtcgtcgtcgccgccgcc 701


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,531,022
Number of Sequences: 3902068
Number of extensions: 3531022
Number of successful extensions: 79321
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 77859
Number of HSP's gapped (non-prelim): 1482
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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