>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
 Frame = +1

Query: 139  SHGGSPQPXXXXXXAMDTPDRPRAGAAAGFEDS--PVFNFINNLSPIPPPKPQDSSHNVH 312
            SH   P P       + TP  P  G +    +S  PV N +  LS +P P   + +    
Sbjct: 1883 SHSRPPSPVDPYAKMVGTPRPPPGGHSFPRRNSVTPVENCVP-LSSVPRPIHMNETSATR 1941

Query: 313  LFKSSDLAPVSSIFASPHVNPPKESKILIRXXXXXXXXXXXXPIVSE 453
               + DL   S   + P+  PP   + ++             P++SE
Sbjct: 1942 PSPARDLCASSMTNSDPYAKPPDTPRPMMTDQFSKPFSLPRSPVISE 1988

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
            chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 250  FINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPKES 387
            F  +L P PP  P++    VHL +  ++ PV      P + PP++S
Sbjct: 1161 FSTSLRPEPPKHPENIKAPVHLPQRPEMKPVD--IGRPVIRPPEQS 1204

>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3)
          Length = 583

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +1

Query: 229 EDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPP 378
           ED+PV      LSP PP KP  SS       SSD+   S+  +S    PP
Sbjct: 317 EDTPVEQAA--LSPFPPSKPPVSSELGDSSCSSDMTDSSTTLSSGSSEPP 364

>Y779_METJA (Q58189) Hypothetical protein MJ0779|
          Length = 299

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 202 PRAGAAAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASP 363
           P   A  G     V   ++ ++PIPP KP+D S    + +    A + ++FA P
Sbjct: 211 PAVAALLGAYLIAVSGMLSGVAPIPPVKPEDISKGFEIVQMG-TAIIGALFAIP 263

>CREA_ASPOR (Q9P889) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 429

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 208 AGAAAGFEDSPVFNFINNLSPIPPP-KPQDSSHNVHLFKSSDLAPVSSIFASPHVNPP 378
           A AAA  +++ + N  N  S +PPP KP   S           APVS +  SP V+PP
Sbjct: 145 AAAAAAGQENAMVNVTNAGSLMPPPTKPMTRS-----------APVSQV-GSPDVSPP 190

>OAS2_HUMAN (P29728) 2'-5'-oligoadenylate synthetase 2 (EC 2.7.7.-)|
           ((2-5')oligo(A) synthetase 2) (2-5A synthetase 2) (p69
           OAS / p71 OAS) (p69OAS / p71OAS)
          Length = 726

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 217 AAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDL 333
           +  F+  P FN +  LS    P P+  +  + L+KSSDL
Sbjct: 476 SVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDL 514

>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)|
           (Forkhead-related transcription factor 2) (FREAC-2)
           (Forkhead-related activator 2)
          Length = 444

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = +1

Query: 151 SPQPXXXXXXAMDTPDRPRAGAAAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSD 330
           SP P      +   P  P    AAG      +   ++ SP+P      S+   H   +S 
Sbjct: 277 SPNPGSTYMASCPVPAGPGGVGAAGGGGGGDYGPDSSSSPVPSSPAMASAIECHSPYTSP 336

Query: 331 LAPVSSIFASPHVNPP 378
            A  SS  ASP++  P
Sbjct: 337 AAHWSSPGASPYLKQP 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,315,968
Number of Sequences: 219361
Number of extensions: 674861
Number of successful extensions: 2010
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)