ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28b11 |
|---|---|
| Clone Library Name | barley_pub |
>ARFH_ARATH (Q9FGV1) Auxin response factor 8| Length = 811 Score = 101 bits (251), Expect = 9e-22 Identities = 45/54 (83%), Positives = 51/54 (94%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPT 426 +K LNSELWHACAGPLV LP+ G+RVVYFPQGHSEQVAA+TNKEV+GHIPNYP+ Sbjct: 16 EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPS 69
>ARFF_ARATH (Q9ZTX8) Auxin response factor 6| Length = 933 Score = 100 bits (250), Expect = 1e-21 Identities = 45/54 (83%), Positives = 50/54 (92%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPT 426 K+ LNSELWHACAGPLV LP +G+RVVYFPQGHSEQVAASTNKEV+ HIPNYP+ Sbjct: 17 KRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPS 70
>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)| Length = 1086 Score = 82.0 bits (201), Expect = 6e-16 Identities = 38/53 (71%), Positives = 44/53 (83%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYP 423 KK +NS+LWHACAGPLV LP +G+ VVYFPQGHSEQVAAS K+ + IPNYP Sbjct: 17 KKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTD-FIPNYP 68
>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)| (Auxin-responsive protein IAA24) Length = 902 Score = 80.9 bits (198), Expect = 1e-15 Identities = 35/53 (66%), Positives = 40/53 (75%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYP 423 K +NSELWHACAGPLVCLP +G+ V YF QGHSEQVA ST + +PNYP Sbjct: 48 KPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYP 100
>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)| (Protein BIPOSTO) (Auxin-responsive protein IAA21/IAA23/IAA25) Length = 1164 Score = 80.9 bits (198), Expect = 1e-15 Identities = 36/53 (67%), Positives = 44/53 (83%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYP 423 ++N+NSELWHACAGPL+ LP G+ VVYFPQGHSEQVAAS K+ + IP+YP Sbjct: 18 RRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTD-FIPSYP 69
>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)| Length = 859 Score = 66.6 bits (161), Expect = 3e-11 Identities = 31/49 (63%), Positives = 34/49 (69%) Frame = +1 Query: 274 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNY 420 L ELWHACAGPLV +P RV YFPQGH EQV ASTN+ E +P Y Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY 106
>ARFA_ARATH (Q8L7G0) Auxin response factor 1| Length = 665 Score = 63.5 bits (153), Expect = 2e-10 Identities = 27/46 (58%), Positives = 35/46 (76%) Frame = +1 Query: 283 ELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNY 420 ELWHACAGPLV LP G RV YFP+GH EQ+ AS ++ +E +P++ Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF 67
>ARFK_ARATH (Q9ZPY6) Auxin response factor 11| Length = 601 Score = 60.8 bits (146), Expect = 1e-09 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = +1 Query: 274 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 L +ELW ACAGPLV +P G RV YFPQGH EQ+ ASTN+ V Sbjct: 18 LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGV 59
>ARFD_ARATH (Q9ZTX9) Auxin response factor 4| Length = 788 Score = 59.7 bits (143), Expect = 3e-09 Identities = 26/36 (72%), Positives = 28/36 (77%) Frame = +1 Query: 271 NLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVA 378 ++ SELWHACAGPL CLP G VVYFPQGH EQ A Sbjct: 61 SIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDA 96
>ARFW_ARATH (Q9LP07) Putative auxin response factor 23| Length = 222 Score = 56.2 bits (134), Expect = 3e-08 Identities = 26/51 (50%), Positives = 32/51 (62%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPN 417 K + +LW CAGPL +P LG +V YFPQGH E V AST +E+ PN Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPN 71
>ARFR_ARATH (Q9C5W9) Auxin response factor 18| Length = 602 Score = 55.8 bits (133), Expect = 5e-08 Identities = 25/42 (59%), Positives = 30/42 (71%) Frame = +1 Query: 274 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 L +ELW CAGPLV +P RV YFPQGH EQ+ ASTN+ + Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGI 63
>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)| Length = 608 Score = 55.1 bits (131), Expect = 8e-08 Identities = 27/50 (54%), Positives = 34/50 (68%) Frame = +1 Query: 283 ELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPTCR 432 ELWHACAGPL+ LP G+ V+YFPQGH EQ A + + G +P + CR Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQ-APDFSAAIYG-LPPHVFCR 101
>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14| Length = 605 Score = 54.3 bits (129), Expect = 1e-07 Identities = 24/45 (53%), Positives = 30/45 (66%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 K + +LW CAGPL +P LG +V YFPQGH E V AST +E+ Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREEL 65
>ARFI_ARATH (Q9XED8) Auxin response factor 9| Length = 638 Score = 52.4 bits (124), Expect = 5e-07 Identities = 24/40 (60%), Positives = 27/40 (67%) Frame = +1 Query: 274 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNK 393 L ELW CAGPLV +P RV YFPQGH EQ+ AST + Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 48
>ARFL_ARATH (Q9XID4) Putative auxin response factor 12| Length = 593 Score = 52.4 bits (124), Expect = 5e-07 Identities = 23/45 (51%), Positives = 29/45 (64%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 K + +LW CAGPL +P LG +V YFPQGH E V ST +E+ Sbjct: 21 KSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREEL 65
>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15| Length = 593 Score = 51.6 bits (122), Expect = 9e-07 Identities = 23/45 (51%), Positives = 30/45 (66%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 K + +LW CAGPL +P LG +V YFPQG+ E V AST +E+ Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREEL 65
>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22| Length = 598 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/45 (48%), Positives = 30/45 (66%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 K + +LW CAGPL +P LG ++ YFPQG+ E V AST +E+ Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREEL 65
>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21| Length = 606 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/45 (51%), Positives = 29/45 (64%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 K + +LW CAGPL +P LG V YFPQG+ E V AST +E+ Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREEL 65
>ARFP_ARATH (Q93YR9) Auxin response factor 16| Length = 670 Score = 50.8 bits (120), Expect = 1e-06 Identities = 19/35 (54%), Positives = 28/35 (80%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSE 369 +K L+ +LWHACAG +V +P + ++V YFPQGH+E Sbjct: 13 EKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAE 47
>ARFM_ARATH (Q9FX25) Putative auxin response factor 13| Length = 623 Score = 50.4 bits (119), Expect = 2e-06 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVE 402 K + +LW+ CAGPL LP G +V YFPQGH E + ST E++ Sbjct: 21 KTYMYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELD 66
>ARFJ_ARATH (Q9SKN5) Auxin response factor 10| Length = 693 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/53 (43%), Positives = 33/53 (62%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYP 423 +K+L+ +LWHACAG +V +P+L + V YF QGH+E A + H P P Sbjct: 4 EKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DFHAPRVP 52
>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20| Length = 606 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/45 (51%), Positives = 29/45 (64%) Frame = +1 Query: 265 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEV 399 K + +LW CAGPL +P LG V YFPQG+ E V AST +E+ Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREEL 65
>ARFQ_ARATH (Q84WU6) Auxin response factor 17| Length = 585 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = +1 Query: 268 KNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSE 369 + ++ +W ACAG V +P L +RV YFPQGH E Sbjct: 14 REVDPTIWRACAGASVQIPVLHSRVYYFPQGHVE 47
>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)| Length = 426 Score = 32.7 bits (73), Expect = 0.41 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -2 Query: 221 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFSSHPAVI 75 PP P + SP+P T+P ++P PP + A++ P+L ++P V+ Sbjct: 197 PPPPPPPVKAPSPSPATQPPTKQPPPPPR-AKKSPLLPPPPPVAYPPVM 244
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%) Frame = -2 Query: 221 PPRLAPEEELISPAPVTRP-----ENEKPTPPHKSARRY----PILKSAAFSSHP 84 PP P L SP PV P E ++P PPH S R ++ SAA +S P Sbjct: 70 PPSERPRLVLSSPRPVLAPLSIAGEQKRPPPPHSSNRAAKSVGQLVVSAAAASKP 124
>Y1380_BACHD (Q9KD39) UPF0135 protein BH1380| Length = 372 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 340 VVYFPQGHSEQVAASTNKEVEGHIPNYPTC 429 VV+ P H++QV + + GHI NY C Sbjct: 140 VVFVPHTHTDQVREALGRAGAGHIGNYSYC 169
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = -2 Query: 218 PRLAPEEELISPAPVTRPENEKPTP---PHKSARR 123 P E + PAP TRP N PTP P K+A R Sbjct: 116 PARPSTESVAHPAPPTRPANPTPTPTSSPPKTAAR 150
>MUTL_SYNY3 (P73349) DNA mismatch repair protein mutL| Length = 556 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Frame = +1 Query: 313 VCLPTLGTRVVYFPQGHSEQ-----VAASTNKEVEGHIPNYPTCRRS 438 V P G R+ Y PQG EQ +A T EV N+P R++ Sbjct: 113 VASPGCGWRITYSPQGSPEQIEPVAIAMGTRVEVRQLFANFPQRRQA 159
>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1| (WD-repeat protein 9) Length = 2304 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 319 LPTLGTRVVYFPQGHSEQVAA 381 +P +G V+YFPQGH + A Sbjct: 959 VPQMGDEVIYFPQGHEAYIEA 979
>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase| Length = 486 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = -2 Query: 221 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFS 93 PP P P P+ RP +P P RR + AAF+ Sbjct: 257 PPLPVPSPGAAPPDPLVRPGRPRPQAPDGLRRRVAMASGAAFT 299
>MMPL2_MYCTU (Q11171) Putative membrane protein mmpL2| Length = 968 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 147 APSQIRPAVPHPQIRRILISSGSHPSS 67 A +RP P +R +L+ SG HPS+ Sbjct: 937 ASQMLRPFAPRRLVRALLLPSGQHPSA 963
>GPI8_PONPY (Q5R6L8) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 111 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 203 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>GPI8_PIG (Q4KRV1) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 111 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 203 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>GPI8_HUMAN (Q92643) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) (hGPI8) Length = 395 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 111 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 203 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>GPI8_BOVIN (Q3MHZ7) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 111 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 203 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -2 Query: 212 LAPEEELISPAPVTRPENEKPTP 144 L PEE L+ P P PE E P P Sbjct: 54 LEPEELLLEPEPEPEPEEEPPRP 76
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -2 Query: 212 LAPEEELISPAPVTRPENEKPTP 144 L PEE L+ P P PE E P P Sbjct: 54 LEPEELLLEPEPEPEPEEEPPRP 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,235,329 Number of Sequences: 219361 Number of extensions: 493479 Number of successful extensions: 2428 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2418 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
